EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000011625 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 4295 bases
Position: chrreftig_1:5250506-5254800
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019800	tRNA-synt_2d	PF01409.20	3e-45	1	2
ENSCSAVP00000019800	tRNA-synt_2d	PF01409.20	3e-45	2	2
ENSCSAVP00000019801	tRNA-synt_2d	PF01409.20	6.7e-41	1	2
ENSCSAVP00000019801	tRNA-synt_2d	PF01409.20	6.7e-41	2	2
ENSCSAVP00000019801	FDX-ACB	PF03147.14	1.4e-22	1	1
ENSCSAVP00000019800	FDX-ACB	PF03147.14	1.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000020013	-	1744	-	ENSCSAVP00000019800	484 (aa)	-	H2ZQD4
ENSCSAVT00000020014	-	1382	-	ENSCSAVP00000019801	433 (aa)	-	H2ZQD5

Gene Model

Click here to download ENSCSAVG00000011625's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011625's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011625	-	94	50.714	ENSG00000145982	FARS2	89	55.556	Homo_sapiens
ENSCSAVG00000011625	-	94	53.207	ENSAPOG00000014855	fars2	88	58.168	Acanthochromis_polyacanthus
ENSCSAVG00000011625	-	94	50.238	ENSAMEG00000017443	FARS2	92	54.342	Ailuropoda_melanoleuca
ENSCSAVG00000011625	-	100	44.397	ENSACIG00000020060	fars2	99	47.414	Amphilophus_citrinellus
ENSCSAVG00000011625	-	66	49.333	ENSAOCG00000016927	fars2	68	60.700	Amphiprion_ocellaris
ENSCSAVG00000011625	-	99	51.454	ENSAPEG00000002964	fars2	94	58.765	Amphiprion_percula
ENSCSAVG00000011625	-	90	48.395	ENSATEG00000016534	fars2	80	54.005	Anabas_testudineus
ENSCSAVG00000011625	-	96	47.907	ENSACAG00000029677	FARS2	89	52.357	Anolis_carolinensis
ENSCSAVG00000011625	-	94	43.333	ENSANAG00000019047	FARS2	93	45.775	Aotus_nancymaae
ENSCSAVG00000011625	-	95	50.917	ENSACLG00000018607	fars2	89	55.825	Astatotilapia_calliptera
ENSCSAVG00000011625	-	94	51.069	ENSAMXG00000019001	fars2	98	51.542	Astyanax_mexicanus
ENSCSAVG00000011625	-	94	50.952	ENSBTAG00000018072	FARS2	90	54.839	Bos_taurus
ENSCSAVG00000011625	-	93	41.981	WBGene00013361	fars-2	97	44.498	Caenorhabditis_elegans
ENSCSAVG00000011625	-	94	49.762	ENSCJAG00000021369	FARS2	89	53.846	Callithrix_jacchus
ENSCSAVG00000011625	-	94	50.238	ENSCAFG00000009483	FARS2	89	54.342	Canis_familiaris
ENSCSAVG00000011625	-	94	50.238	ENSCAFG00020013360	FARS2	89	54.342	Canis_lupus_dingo
ENSCSAVG00000011625	-	94	50.952	ENSCHIG00000017678	FARS2	90	54.839	Capra_hircus
ENSCSAVG00000011625	-	94	47.143	ENSCAPG00000008055	FARS2	88	50.620	Cavia_aperea
ENSCSAVG00000011625	-	94	50.714	ENSCPOG00000003994	FARS2	89	55.087	Cavia_porcellus
ENSCSAVG00000011625	-	94	49.286	ENSCATG00000038588	FARS2	89	53.598	Cercocebus_atys
ENSCSAVG00000011625	-	94	49.762	ENSCLAG00000017316	FARS2	89	54.094	Chinchilla_lanigera
ENSCSAVG00000011625	-	83	50.535	ENSCSAG00000007344	FARS2	87	53.804	Chlorocebus_sabaeus
ENSCSAVG00000011625	-	97	46.207	ENSCPBG00000008751	FARS2	92	50.000	Chrysemys_picta_bellii
ENSCSAVG00000011625	-	69	74.747	ENSCING00000012827	-	97	81.071	Ciona_intestinalis
ENSCSAVG00000011625	-	94	50.000	ENSCANG00000042851	FARS2	89	54.342	Colobus_angolensis_palliatus
ENSCSAVG00000011625	-	94	51.429	ENSCGRG00001022626	Fars2	89	55.087	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011625	-	94	51.429	ENSCGRG00000007344	Fars2	89	55.087	Cricetulus_griseus_crigri
ENSCSAVG00000011625	-	94	51.049	ENSCSEG00000018234	fars2	97	52.723	Cynoglossus_semilaevis
ENSCSAVG00000011625	-	84	52.660	ENSCVAG00000008305	fars2	87	58.659	Cyprinodon_variegatus
ENSCSAVG00000011625	-	92	50.966	ENSDARG00000091247	fars2	88	56.171	Danio_rerio
ENSCSAVG00000011625	-	94	50.238	ENSDNOG00000018118	FARS2	89	54.591	Dasypus_novemcinctus
ENSCSAVG00000011625	-	94	50.476	ENSDORG00000014796	Fars2	89	54.591	Dipodomys_ordii
ENSCSAVG00000011625	-	95	47.126	FBgn0275436	PheRS-m	92	49.762	Drosophila_melanogaster
ENSCSAVG00000011625	-	74	53.548	ENSETEG00000016493	FARS2	75	53.548	Echinops_telfairi
ENSCSAVG00000011625	-	95	49.533	ENSEBUG00000007120	fars2	81	50.812	Eptatretus_burgeri
ENSCSAVG00000011625	-	94	49.286	ENSEASG00005012111	FARS2	88	54.749	Equus_asinus_asinus
ENSCSAVG00000011625	-	94	50.000	ENSECAG00000000279	FARS2	89	54.342	Equus_caballus
ENSCSAVG00000011625	-	77	53.896	ENSEEUG00000007412	FARS2	90	41.045	Erinaceus_europaeus
ENSCSAVG00000011625	-	97	51.471	ENSELUG00000004874	fars2	99	51.471	Esox_lucius
ENSCSAVG00000011625	-	94	50.238	ENSFCAG00000014441	FARS2	89	54.591	Felis_catus
ENSCSAVG00000011625	-	96	51.163	ENSFALG00000013171	FARS2	89	55.583	Ficedula_albicollis
ENSCSAVG00000011625	-	94	50.238	ENSFDAG00000018935	FARS2	89	54.342	Fukomys_damarensis
ENSCSAVG00000011625	-	96	47.806	ENSFHEG00000011155	fars2	92	47.806	Fundulus_heteroclitus
ENSCSAVG00000011625	-	95	51.869	ENSGMOG00000015750	fars2	88	57.143	Gadus_morhua
ENSCSAVG00000011625	-	96	51.395	ENSGALG00000042481	FARS2	88	56.955	Gallus_gallus
ENSCSAVG00000011625	-	95	45.455	ENSGAFG00000002233	fars2	88	50.985	Gambusia_affinis
ENSCSAVG00000011625	-	94	50.118	ENSGACG00000002036	fars2	87	54.926	Gasterosteus_aculeatus
ENSCSAVG00000011625	-	97	50.230	ENSGAGG00000012914	FARS2	90	54.415	Gopherus_agassizii
ENSCSAVG00000011625	-	94	51.190	ENSGGOG00000011842	FARS2	89	54.839	Gorilla_gorilla
ENSCSAVG00000011625	-	95	50.917	ENSHBUG00000003439	fars2	89	55.825	Haplochromis_burtoni
ENSCSAVG00000011625	-	94	50.476	ENSHGLG00000004389	FARS2	89	54.839	Heterocephalus_glaber_female
ENSCSAVG00000011625	-	94	50.476	ENSHGLG00100010315	FARS2	89	54.839	Heterocephalus_glaber_male
ENSCSAVG00000011625	-	99	49.558	ENSHCOG00000005861	fars2	93	55.474	Hippocampus_comes
ENSCSAVG00000011625	-	94	52.955	ENSIPUG00000000375	fars2	91	55.981	Ictalurus_punctatus
ENSCSAVG00000011625	-	93	50.481	ENSSTOG00000012156	FARS2	88	54.637	Ictidomys_tridecemlineatus
ENSCSAVG00000011625	-	94	50.238	ENSJJAG00000002799	Fars2	89	54.342	Jaculus_jaculus
ENSCSAVG00000011625	-	53	60.547	ENSKMAG00000002336	fars2	61	60.547	Kryptolebias_marmoratus
ENSCSAVG00000011625	-	52	46.186	ENSLBEG00000019049	fars2	100	49.561	Labrus_bergylta
ENSCSAVG00000011625	-	94	51.190	ENSLACG00000006541	FARS2	96	55.094	Latimeria_chalumnae
ENSCSAVG00000011625	-	89	51.238	ENSLOCG00000011667	fars2	88	55.959	Lepisosteus_oculatus
ENSCSAVG00000011625	-	94	50.238	ENSLAFG00000007104	FARS2	89	54.342	Loxodonta_africana
ENSCSAVG00000011625	-	94	49.048	ENSMFAG00000043484	FARS2	89	53.350	Macaca_fascicularis
ENSCSAVG00000011625	-	94	49.048	ENSMMUG00000016352	FARS2	89	53.350	Macaca_mulatta
ENSCSAVG00000011625	-	94	49.048	ENSMNEG00000044897	FARS2	89	53.350	Macaca_nemestrina
ENSCSAVG00000011625	-	94	49.048	ENSMLEG00000038594	FARS2	89	53.350	Mandrillus_leucophaeus
ENSCSAVG00000011625	-	95	49.654	ENSMAMG00000008166	fars2	99	50.870	Mastacembelus_armatus
ENSCSAVG00000011625	-	95	50.459	ENSMZEG00005020256	fars2	89	55.340	Maylandia_zebra
ENSCSAVG00000011625	-	94	51.190	ENSMAUG00000008493	Fars2	89	54.839	Mesocricetus_auratus
ENSCSAVG00000011625	-	94	50.476	ENSMICG00000003828	FARS2	99	54.795	Microcebus_murinus
ENSCSAVG00000011625	-	94	50.476	ENSMOCG00000021203	Fars2	89	54.094	Microtus_ochrogaster
ENSCSAVG00000011625	-	94	52.246	ENSMMOG00000019236	fars2	98	52.735	Mola_mola
ENSCSAVG00000011625	-	98	50.000	ENSMODG00000009839	FARS2	88	55.224	Monodelphis_domestica
ENSCSAVG00000011625	-	95	50.000	ENSMALG00000021209	fars2	77	54.831	Monopterus_albus
ENSCSAVG00000011625	-	94	50.714	MGP_CAROLIEiJ_G0018432	Fars2	89	54.591	Mus_caroli
ENSCSAVG00000011625	-	94	50.952	ENSMUSG00000021420	Fars2	99	54.795	Mus_musculus
ENSCSAVG00000011625	-	94	50.714	MGP_PahariEiJ_G0019500	Fars2	89	54.591	Mus_pahari
ENSCSAVG00000011625	-	94	50.952	MGP_SPRETEiJ_G0019312	Fars2	89	54.839	Mus_spretus
ENSCSAVG00000011625	-	94	50.000	ENSMPUG00000000534	FARS2	81	53.846	Mustela_putorius_furo
ENSCSAVG00000011625	-	94	50.952	ENSNGAG00000021589	Fars2	89	55.335	Nannospalax_galili
ENSCSAVG00000011625	-	95	50.688	ENSNBRG00000016915	fars2	89	55.583	Neolamprologus_brichardi
ENSCSAVG00000011625	-	94	50.476	ENSNLEG00000011479	FARS2	89	54.591	Nomascus_leucogenys
ENSCSAVG00000011625	-	57	47.967	ENSMEUG00000003495	-	96	50.420	Notamacropus_eugenii
ENSCSAVG00000011625	-	68	53.191	ENSOPRG00000000428	FARS2	67	55.769	Ochotona_princeps
ENSCSAVG00000011625	-	94	50.714	ENSODEG00000006881	FARS2	89	55.087	Octodon_degus
ENSCSAVG00000011625	-	95	50.685	ENSONIG00000013394	fars2	86	55.663	Oreochromis_niloticus
ENSCSAVG00000011625	-	60	48.339	ENSOANG00000001199	-	95	53.360	Ornithorhynchus_anatinus
ENSCSAVG00000011625	-	94	50.952	ENSOCUG00000014165	FARS2	89	55.087	Oryctolagus_cuniculus
ENSCSAVG00000011625	-	100	50.110	ENSORLG00000003287	fars2	96	52.772	Oryzias_latipes
ENSCSAVG00000011625	-	100	50.331	ENSORLG00020010934	fars2	96	52.993	Oryzias_latipes_hni
ENSCSAVG00000011625	-	100	49.669	ENSORLG00015007676	fars2	96	52.328	Oryzias_latipes_hsok
ENSCSAVG00000011625	-	72	53.538	ENSOMEG00000001412	fars2	71	59.547	Oryzias_melastigma
ENSCSAVG00000011625	-	94	50.952	ENSOGAG00000001040	FARS2	89	55.224	Otolemur_garnettii
ENSCSAVG00000011625	-	59	43.750	ENSOARG00000018718	-	83	45.817	Ovis_aries
ENSCSAVG00000011625	-	89	51.128	ENSPPAG00000040551	FARS2	85	55.643	Pan_paniscus
ENSCSAVG00000011625	-	94	50.714	ENSPPRG00000006027	FARS2	89	55.087	Panthera_pardus
ENSCSAVG00000011625	-	94	50.476	ENSPTIG00000016684	FARS2	89	54.839	Panthera_tigris_altaica
ENSCSAVG00000011625	-	89	51.128	ENSPTRG00000017692	FARS2	81	55.643	Pan_troglodytes
ENSCSAVG00000011625	-	94	49.048	ENSPANG00000018208	FARS2	89	53.350	Papio_anubis
ENSCSAVG00000011625	-	94	51.781	ENSPKIG00000010545	fars2	87	56.188	Paramormyrops_kingsleyae
ENSCSAVG00000011625	-	97	50.000	ENSPSIG00000007752	FARS2	90	54.177	Pelodiscus_sinensis
ENSCSAVG00000011625	-	94	53.081	ENSPMGG00000011665	fars2	90	57.037	Periophthalmus_magnuspinnatus
ENSCSAVG00000011625	-	52	50.877	ENSPEMG00000017477	-	99	53.881	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011625	-	94	49.406	ENSPMAG00000001580	fars2	96	53.465	Petromyzon_marinus
ENSCSAVG00000011625	-	95	50.583	ENSPFOG00000017241	fars2	87	56.404	Poecilia_formosa
ENSCSAVG00000011625	-	52	52.964	ENSPLAG00000010636	fars2	56	52.964	Poecilia_latipinna
ENSCSAVG00000011625	-	52	58.893	ENSPMEG00000016166	fars2	77	59.615	Poecilia_mexicana
ENSCSAVG00000011625	-	95	49.883	ENSPREG00000010118	fars2	88	55.665	Poecilia_reticulata
ENSCSAVG00000011625	-	94	50.476	ENSPPYG00000016197	FARS2	89	54.591	Pongo_abelii
ENSCSAVG00000011625	-	99	43.243	ENSPCAG00000002324	FARS2	94	43.243	Procavia_capensis
ENSCSAVG00000011625	-	78	54.639	ENSPCOG00000015666	FARS2	87	54.639	Propithecus_coquereli
ENSCSAVG00000011625	-	57	66.667	ENSPVAG00000015327	FARS2	55	66.667	Pteropus_vampyrus
ENSCSAVG00000011625	-	83	49.740	ENSPNYG00000009469	fars2	74	55.742	Pundamilia_nyererei
ENSCSAVG00000011625	-	94	51.781	ENSPNAG00000000440	fars2	87	56.436	Pygocentrus_nattereri
ENSCSAVG00000011625	-	94	47.955	ENSRNOG00000016135	Fars2	89	51.537	Rattus_norvegicus
ENSCSAVG00000011625	-	94	49.762	ENSRROG00000030357	FARS2	81	54.094	Rhinopithecus_roxellana
ENSCSAVG00000011625	-	95	36.980	YPR047W	MSF1	96	36.980	Saccharomyces_cerevisiae
ENSCSAVG00000011625	-	94	50.000	ENSSBOG00000025432	FARS2	89	54.094	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011625	-	94	52.494	ENSSFOG00015020636	fars2	89	56.863	Scleropages_formosus
ENSCSAVG00000011625	-	94	51.288	ENSSMAG00000010353	fars2	90	56.341	Scophthalmus_maximus
ENSCSAVG00000011625	-	94	50.816	ENSSDUG00000016357	fars2	88	55.825	Seriola_dumerili
ENSCSAVG00000011625	-	84	45.780	ENSSLDG00000008683	fars2	98	47.596	Seriola_lalandi_dorsalis
ENSCSAVG00000011625	-	72	47.840	ENSSARG00000001129	FARS2	91	51.961	Sorex_araneus
ENSCSAVG00000011625	-	68	46.602	ENSSPUG00000006717	-	70	54.511	Sphenodon_punctatus
ENSCSAVG00000011625	-	97	51.467	ENSSPAG00000001346	fars2	88	57.457	Stegastes_partitus
ENSCSAVG00000011625	-	92	44.836	ENSSSCG00000038717	FARS2	100	55.776	Sus_scrofa
ENSCSAVG00000011625	-	94	51.905	ENSTGUG00000002269	FARS2	100	55.583	Taeniopygia_guttata
ENSCSAVG00000011625	-	84	53.005	ENSTRUG00000005887	fars2	98	55.556	Takifugu_rubripes
ENSCSAVG00000011625	-	94	53.333	ENSTNIG00000005800	fars2	89	58.416	Tetraodon_nigroviridis
ENSCSAVG00000011625	-	57	70.370	ENSTBEG00000001804	-	82	70.370	Tupaia_belangeri
ENSCSAVG00000011625	-	94	50.000	ENSTTRG00000000063	FARS2	88	54.342	Tursiops_truncatus
ENSCSAVG00000011625	-	94	49.762	ENSUMAG00000018618	FARS2	89	53.846	Ursus_maritimus
ENSCSAVG00000011625	-	94	48.095	ENSVPAG00000010451	FARS2	91	50.868	Vicugna_pacos
ENSCSAVG00000011625	-	94	50.238	ENSVVUG00000005409	FARS2	89	54.342	Vulpes_vulpes
ENSCSAVG00000011625	-	51	46.491	ENSXCOG00000000559	-	57	59.195	Xiphophorus_couchianus