EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000011708 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 13900 bases
Position: chrreftig_1:5552190-5566089
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019949	Aconitase	PF00330.20	1e-179	1	1
ENSCSAVP00000019945	Aconitase	PF00330.20	1.3e-179	1	1
ENSCSAVP00000019943	Aconitase	PF00330.20	1.4e-179	1	1
ENSCSAVP00000019946	Aconitase	PF00330.20	1.5e-179	1	1
ENSCSAVP00000019942	Aconitase	PF00330.20	6.4e-179	1	1
ENSCSAVP00000019944	Aconitase	PF00330.20	7.4e-178	1	1
ENSCSAVP00000019948	Aconitase	PF00330.20	1.1e-174	1	1
ENSCSAVP00000019947	Aconitase	PF00330.20	1.4e-167	1	2
ENSCSAVP00000019947	Aconitase	PF00330.20	1.4e-167	2	2
ENSCSAVP00000019945	Aconitase_C	PF00694.19	2.3e-45	1	1
ENSCSAVP00000019942	Aconitase_C	PF00694.19	2.4e-45	1	1
ENSCSAVP00000019943	Aconitase_C	PF00694.19	2.5e-45	1	1
ENSCSAVP00000019946	Aconitase_C	PF00694.19	2.5e-45	1	1
ENSCSAVP00000019944	Aconitase_C	PF00694.19	2.6e-45	1	1
ENSCSAVP00000019948	Aconitase_C	PF00694.19	2.7e-45	1	1
ENSCSAVP00000019947	Aconitase_C	PF00694.19	2.7e-45	1	1
ENSCSAVP00000019949	Aconitase_C	PF00694.19	3.4e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000020161	-	2778	-	ENSCSAVP00000019947	926 (aa)	-	H2ZQT1
ENSCSAVT00000020160	-	2781	-	ENSCSAVP00000019946	897 (aa)	-	H2ZQT0
ENSCSAVT00000020156	-	3112	-	ENSCSAVP00000019942	878 (aa)	-	H2ZQS6
ENSCSAVT00000020157	-	3148	-	ENSCSAVP00000019943	894 (aa)	-	H2ZQS7
ENSCSAVT00000020158	-	2733	-	ENSCSAVP00000019944	910 (aa)	-	H2ZQS8
ENSCSAVT00000020159	-	2589	-	ENSCSAVP00000019945	862 (aa)	-	H2ZQS9
ENSCSAVT00000020162	-	2736	-	ENSCSAVP00000019948	912 (aa)	-	H2ZQT2
ENSCSAVT00000020163	-	2385	-	ENSCSAVP00000019949	795 (aa)	-	H2ZQT3

Gene Model

Click here to download ENSCSAVG00000011708's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011708's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000011708	-	79	32.046	ENSCSAVG00000007584	-	96	33.696

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011708	-	99	61.208	WBGene00000040	aco-1	94	65.657	Caenorhabditis_elegans
ENSCSAVG00000011708	-	99	89.977	ENSCING00000009541	-	100	89.509	Ciona_intestinalis
ENSCSAVG00000011708	-	99	66.016	FBgn0024957	Irp-1B	94	72.381	Drosophila_melanogaster
ENSCSAVG00000011708	-	99	67.623	FBgn0024958	Irp-1A	99	66.443	Drosophila_melanogaster
ENSCSAVG00000011708	-	100	68.445	ENSEBUG00000003892	-	93	72.549	Eptatretus_burgeri