EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000011749 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 2511 bases
Position: chrreftig_1:5971778-5974288
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000020017	zf-C2H2	PF00096.26	2.8e-19	1	4
ENSCSAVP00000020017	zf-C2H2	PF00096.26	2.8e-19	2	4
ENSCSAVP00000020017	zf-C2H2	PF00096.26	2.8e-19	3	4
ENSCSAVP00000020017	zf-C2H2	PF00096.26	2.8e-19	4	4
ENSCSAVP00000020017	zf-met	PF12874.7	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000020231	-	470	-	ENSCSAVP00000020017	149 (aa)	-	H2ZR01

Gene Model

Click here to download ENSCSAVG00000011749's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011749's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000011749	-	74	41.121	ENSCSAVG00000002179	-	100	41.121
ENSCSAVG00000011749	-	73	38.889	ENSCSAVG00000004762	-	99	38.889
ENSCSAVG00000011749	-	80	41.250	ENSCSAVG00000009739	-	51	41.250
ENSCSAVG00000011749	-	87	39.815	ENSCSAVG00000006608	-	99	44.118
ENSCSAVG00000011749	-	92	39.450	ENSCSAVG00000004703	-	99	45.333
ENSCSAVG00000011749	-	92	38.835	ENSCSAVG00000004499	-	99	38.889
ENSCSAVG00000011749	-	77	39.450	ENSCSAVG00000000642	-	99	40.187
ENSCSAVG00000011749	-	85	37.383	ENSCSAVG00000000649	-	100	37.383
ENSCSAVG00000011749	-	79	38.679	ENSCSAVG00000009819	-	69	38.679
ENSCSAVG00000011749	-	81	41.414	ENSCSAVG00000009574	-	99	41.414
ENSCSAVG00000011749	-	72	34.259	ENSCSAVG00000003895	-	98	34.259
ENSCSAVG00000011749	-	74	34.615	ENSCSAVG00000006028	-	50	34.615
ENSCSAVG00000011749	-	77	38.318	ENSCSAVG00000009953	-	88	38.318
ENSCSAVG00000011749	-	74	40.385	ENSCSAVG00000010156	-	92	40.385
ENSCSAVG00000011749	-	78	38.318	ENSCSAVG00000005904	-	95	38.318
ENSCSAVG00000011749	-	82	40.323	ENSCSAVG00000001808	-	97	40.323
ENSCSAVG00000011749	-	81	41.176	ENSCSAVG00000000293	-	99	41.176
ENSCSAVG00000011749	-	95	39.506	ENSCSAVG00000007918	-	98	39.506
ENSCSAVG00000011749	-	91	40.000	ENSCSAVG00000007589	-	99	41.509
ENSCSAVG00000011749	-	97	40.964	ENSCSAVG00000006650	-	98	42.308
ENSCSAVG00000011749	-	78	38.272	ENSCSAVG00000001949	-	99	38.272
ENSCSAVG00000011749	-	73	38.532	ENSCSAVG00000009583	-	98	38.532
ENSCSAVG00000011749	-	78	39.286	ENSCSAVG00000006141	-	100	42.308
ENSCSAVG00000011749	-	81	39.535	ENSCSAVG00000010960	-	99	39.080
ENSCSAVG00000011749	-	77	41.975	ENSCSAVG00000000520	-	99	41.975
ENSCSAVG00000011749	-	98	38.596	ENSCSAVG00000008862	-	99	41.935
ENSCSAVG00000011749	-	81	40.187	ENSCSAVG00000000673	-	100	40.187
ENSCSAVG00000011749	-	85	40.741	ENSCSAVG00000000655	-	98	42.667
ENSCSAVG00000011749	-	84	40.678	ENSCSAVG00000004543	-	100	39.080
ENSCSAVG00000011749	-	83	41.121	ENSCSAVG00000000690	-	99	38.318
ENSCSAVG00000011749	-	83	41.053	ENSCSAVG00000001989	-	100	41.053
ENSCSAVG00000011749	-	78	41.071	ENSCSAVG00000004678	-	99	41.071
ENSCSAVG00000011749	-	80	34.545	ENSCSAVG00000005896	-	67	34.545
ENSCSAVG00000011749	-	84	37.273	ENSCSAVG00000011146	-	73	37.273
ENSCSAVG00000011749	-	83	35.802	ENSCSAVG00000009217	-	79	35.802
ENSCSAVG00000011749	-	73	32.530	ENSCSAVG00000003690	-	98	32.530
ENSCSAVG00000011749	-	98	33.929	ENSCSAVG00000006729	-	67	34.188
ENSCSAVG00000011749	-	73	38.679	ENSCSAVG00000001830	-	99	38.679
ENSCSAVG00000011749	-	96	42.169	ENSCSAVG00000001834	-	99	42.169
ENSCSAVG00000011749	-	83	37.963	ENSCSAVG00000006745	-	81	37.963

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011749	-	97	75.000	ENSCING00000009885	-	63	75.000	Ciona_intestinalis