EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000011781 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 3268 bases
Position: chrreftig_268:365159-368426
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000020068	RRM_1	PF00076.22	1.3e-23	1	2
ENSCSAVP00000020068	RRM_1	PF00076.22	1.3e-23	2	2
ENSCSAVP00000020066	RRM_1	PF00076.22	3.6e-14	1	1
ENSCSAVP00000020067	RRM_1	PF00076.22	3.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000020281	-	1389	-	ENSCSAVP00000020066	231 (aa)	-	H2ZR50
ENSCSAVT00000020282	-	1234	-	ENSCSAVP00000020067	231 (aa)	-	H2ZR50
ENSCSAVT00000020283	-	1046	-	ENSCSAVP00000020068	189 (aa)	-	H2ZR52

Gene Model

Click here to download ENSCSAVG00000011781's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011781's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000011781	-	97	30.055	ENSCSAVG00000003102	-	71	30.939
ENSCSAVG00000011781	-	73	30.000	ENSCSAVG00000007809	-	68	30.370
ENSCSAVG00000011781	-	88	31.461	ENSCSAVG00000004246	-	54	31.461

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011781	-	90	51.462	ENSG00000180098	TRNAU1AP	59	51.462	Homo_sapiens
ENSCSAVG00000011781	-	84	49.375	ENSAPOG00000007148	TRNAU1AP	73	31.950	Acanthochromis_polyacanthus
ENSCSAVG00000011781	-	90	51.462	ENSAMEG00000011367	TRNAU1AP	59	51.462	Ailuropoda_melanoleuca
ENSCSAVG00000011781	-	86	48.780	ENSACIG00000004161	trnau1apa	63	48.780	Amphilophus_citrinellus
ENSCSAVG00000011781	-	84	49.375	ENSAOCG00000008056	trnau1apa	70	31.799	Amphiprion_ocellaris
ENSCSAVG00000011781	-	84	49.375	ENSAPEG00000008868	trnau1apa	55	49.080	Amphiprion_percula
ENSCSAVG00000011781	-	89	47.429	ENSATEG00000012140	trnau1apa	56	47.191	Anabas_testudineus
ENSCSAVG00000011781	-	90	51.462	ENSAPLG00000002606	TRNAU1AP	62	51.462	Anas_platyrhynchos
ENSCSAVG00000011781	-	87	45.783	ENSACAG00000003995	-	59	44.571	Anolis_carolinensis
ENSCSAVG00000011781	-	98	44.681	ENSANAG00000018976	TRNAU1AP	99	44.681	Aotus_nancymaae
ENSCSAVG00000011781	-	84	49.375	ENSACLG00000018515	trnau1apa	52	49.375	Astatotilapia_calliptera
ENSCSAVG00000011781	-	95	45.556	ENSAMXG00000013750	trnau1apa	54	47.273	Astyanax_mexicanus
ENSCSAVG00000011781	-	90	51.462	ENSBTAG00000010393	TRNAU1AP	59	51.462	Bos_taurus
ENSCSAVG00000011781	-	98	44.681	ENSCJAG00000009717	TRNAU1AP	99	44.681	Callithrix_jacchus
ENSCSAVG00000011781	-	90	51.462	ENSCAFG00000011735	TRNAU1AP	59	51.462	Canis_familiaris
ENSCSAVG00000011781	-	90	51.462	ENSCAFG00020023584	TRNAU1AP	59	51.462	Canis_lupus_dingo
ENSCSAVG00000011781	-	98	44.681	ENSCHIG00000023215	TRNAU1AP	99	44.681	Capra_hircus
ENSCSAVG00000011781	-	90	50.877	ENSTSYG00000003506	TRNAU1AP	99	42.553	Carlito_syrichta
ENSCSAVG00000011781	-	98	44.681	ENSCPOG00000001925	TRNAU1AP	99	44.681	Cavia_porcellus
ENSCSAVG00000011781	-	98	44.681	ENSCCAG00000037506	TRNAU1AP	99	44.681	Cebus_capucinus
ENSCSAVG00000011781	-	98	44.681	ENSCATG00000044617	TRNAU1AP	99	44.681	Cercocebus_atys
ENSCSAVG00000011781	-	98	44.681	ENSCLAG00000008223	TRNAU1AP	99	44.681	Chinchilla_lanigera
ENSCSAVG00000011781	-	90	52.047	ENSCSAG00000001014	TRNAU1AP	59	52.047	Chlorocebus_sabaeus
ENSCSAVG00000011781	-	87	52.121	ENSCPBG00000000121	TRNAU1AP	60	52.121	Chrysemys_picta_bellii
ENSCSAVG00000011781	-	98	38.865	ENSCANG00000041949	TRNAU1AP	99	35.096	Colobus_angolensis_palliatus
ENSCSAVG00000011781	-	98	44.681	ENSCGRG00001004713	Trnau1ap	99	44.681	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011781	-	98	44.681	ENSCGRG00000014532	Trnau1ap	99	44.681	Cricetulus_griseus_crigri
ENSCSAVG00000011781	-	86	47.853	ENSCSEG00000006663	trnau1apa	68	34.375	Cynoglossus_semilaevis
ENSCSAVG00000011781	-	89	48.824	ENSCVAG00000018069	trnau1apa	56	50.000	Cyprinodon_variegatus
ENSCSAVG00000011781	-	87	43.636	ENSDARG00000101323	trnau1apa	52	43.636	Danio_rerio
ENSCSAVG00000011781	-	86	46.626	ENSDNOG00000047959	-	84	46.626	Dasypus_novemcinctus
ENSCSAVG00000011781	-	90	51.462	ENSDNOG00000033009	TRNAU1AP	59	51.462	Dasypus_novemcinctus
ENSCSAVG00000011781	-	90	51.462	ENSDORG00000006349	Trnau1ap	74	51.462	Dipodomys_ordii
ENSCSAVG00000011781	-	98	36.123	ENSETEG00000012594	TRNAU1AP	80	36.564	Echinops_telfairi
ENSCSAVG00000011781	-	60	42.400	ENSEBUG00000004709	-	65	42.400	Eptatretus_burgeri
ENSCSAVG00000011781	-	98	44.681	ENSEASG00005010062	TRNAU1AP	99	44.681	Equus_asinus_asinus
ENSCSAVG00000011781	-	98	44.681	ENSECAG00000012980	TRNAU1AP	99	44.681	Equus_caballus
ENSCSAVG00000011781	-	86	48.780	ENSELUG00000017686	trnau1apa	56	48.780	Esox_lucius
ENSCSAVG00000011781	-	90	51.462	ENSFCAG00000013401	TRNAU1AP	59	51.462	Felis_catus
ENSCSAVG00000011781	-	90	51.462	ENSFALG00000001371	TRNAU1AP	62	51.462	Ficedula_albicollis
ENSCSAVG00000011781	-	98	44.681	ENSFDAG00000018599	TRNAU1AP	99	44.681	Fukomys_damarensis
ENSCSAVG00000011781	-	84	47.879	ENSFHEG00000018232	trnau1apa	57	47.879	Fundulus_heteroclitus
ENSCSAVG00000011781	-	87	43.787	ENSGMOG00000016508	trnau1apa	56	43.787	Gadus_morhua
ENSCSAVG00000011781	-	87	52.727	ENSGALG00000001310	-	63	52.727	Gallus_gallus
ENSCSAVG00000011781	-	84	50.000	ENSGAFG00000004928	trnau1apa	61	49.689	Gambusia_affinis
ENSCSAVG00000011781	-	89	47.059	ENSGACG00000001443	trnau1apa	55	47.059	Gasterosteus_aculeatus
ENSCSAVG00000011781	-	87	52.121	ENSGAGG00000004940	TRNAU1AP	60	52.121	Gopherus_agassizii
ENSCSAVG00000011781	-	98	44.681	ENSGGOG00000003511	TRNAU1AP	99	44.681	Gorilla_gorilla
ENSCSAVG00000011781	-	84	47.879	ENSHBUG00000002510	trnau1apa	53	47.879	Haplochromis_burtoni
ENSCSAVG00000011781	-	90	50.877	ENSHGLG00000010380	TRNAU1AP	99	42.553	Heterocephalus_glaber_female
ENSCSAVG00000011781	-	88	50.299	ENSHGLG00100012699	TRNAU1AP	58	50.299	Heterocephalus_glaber_male
ENSCSAVG00000011781	-	90	47.159	ENSHCOG00000014770	trnau1apa	56	47.159	Hippocampus_comes
ENSCSAVG00000011781	-	98	44.681	ENSSTOG00000000079	TRNAU1AP	99	44.681	Ictidomys_tridecemlineatus
ENSCSAVG00000011781	-	98	44.681	ENSJJAG00000010128	Trnau1ap	99	44.681	Jaculus_jaculus
ENSCSAVG00000011781	-	89	47.647	ENSKMAG00000001230	trnau1apa	55	47.399	Kryptolebias_marmoratus
ENSCSAVG00000011781	-	86	47.024	ENSLBEG00000011683	trnau1apa	70	31.667	Labrus_bergylta
ENSCSAVG00000011781	-	98	37.004	ENSLACG00000005541	TRNAU1AP	69	34.498	Latimeria_chalumnae
ENSCSAVG00000011781	-	87	50.303	ENSLOCG00000004041	trnau1apa	57	50.303	Lepisosteus_oculatus
ENSCSAVG00000011781	-	90	51.462	ENSLAFG00000007628	TRNAU1AP	59	51.462	Loxodonta_africana
ENSCSAVG00000011781	-	98	44.681	ENSMFAG00000043751	TRNAU1AP	79	45.455	Macaca_fascicularis
ENSCSAVG00000011781	-	98	44.681	ENSMMUG00000006561	TRNAU1AP	99	44.681	Macaca_mulatta
ENSCSAVG00000011781	-	98	44.681	ENSMNEG00000044201	TRNAU1AP	99	44.681	Macaca_nemestrina
ENSCSAVG00000011781	-	98	44.681	ENSMLEG00000015649	TRNAU1AP	79	45.455	Mandrillus_leucophaeus
ENSCSAVG00000011781	-	89	47.929	ENSMAMG00000001247	trnau1apa	61	47.929	Mastacembelus_armatus
ENSCSAVG00000011781	-	84	49.375	ENSMZEG00005017722	trnau1apa	52	49.375	Maylandia_zebra
ENSCSAVG00000011781	-	87	52.727	ENSMGAG00000002105	TRNAU1AP	59	52.727	Meleagris_gallopavo
ENSCSAVG00000011781	-	98	44.681	ENSMICG00000008386	TRNAU1AP	99	44.681	Microcebus_murinus
ENSCSAVG00000011781	-	98	44.681	ENSMOCG00000011189	Trnau1ap	99	44.681	Microtus_ochrogaster
ENSCSAVG00000011781	-	86	42.169	ENSMMOG00000012107	trnau1apa	55	42.169	Mola_mola
ENSCSAVG00000011781	-	90	50.877	ENSMODG00000010927	TRNAU1AP	59	50.877	Monodelphis_domestica
ENSCSAVG00000011781	-	89	48.824	ENSMALG00000016778	trnau1apa	55	48.555	Monopterus_albus
ENSCSAVG00000011781	-	98	44.681	MGP_CAROLIEiJ_G0026563	Trnau1ap	79	45.588	Mus_caroli
ENSCSAVG00000011781	-	98	44.681	ENSMUSG00000028898	Trnau1ap	79	45.588	Mus_musculus
ENSCSAVG00000011781	-	98	44.681	MGP_PahariEiJ_G0028896	Trnau1ap	99	44.681	Mus_pahari
ENSCSAVG00000011781	-	98	44.681	MGP_SPRETEiJ_G0027544	Trnau1ap	79	45.588	Mus_spretus
ENSCSAVG00000011781	-	90	51.462	ENSMPUG00000015511	TRNAU1AP	59	51.462	Mustela_putorius_furo
ENSCSAVG00000011781	-	90	51.462	ENSMLUG00000012586	TRNAU1AP	59	51.462	Myotis_lucifugus
ENSCSAVG00000011781	-	98	42.553	ENSNGAG00000015881	Trnau1ap	57	52.761	Nannospalax_galili
ENSCSAVG00000011781	-	84	45.625	ENSNBRG00000001758	trnau1apa	53	45.625	Neolamprologus_brichardi
ENSCSAVG00000011781	-	98	44.681	ENSNLEG00000009822	TRNAU1AP	79	45.455	Nomascus_leucogenys
ENSCSAVG00000011781	-	90	50.292	ENSMEUG00000006117	TRNAU1AP	61	50.292	Notamacropus_eugenii
ENSCSAVG00000011781	-	98	44.681	ENSODEG00000002970	TRNAU1AP	99	44.681	Octodon_degus
ENSCSAVG00000011781	-	84	49.375	ENSONIG00000004715	trnau1apa	63	49.375	Oreochromis_niloticus
ENSCSAVG00000011781	-	87	41.818	ENSOANG00000005325	-	56	41.818	Ornithorhynchus_anatinus
ENSCSAVG00000011781	-	90	47.368	ENSOCUG00000002353	-	60	47.368	Oryctolagus_cuniculus
ENSCSAVG00000011781	-	90	50.877	ENSOCUG00000011704	-	59	50.877	Oryctolagus_cuniculus
ENSCSAVG00000011781	-	86	39.506	ENSOCUG00000006834	-	63	39.506	Oryctolagus_cuniculus
ENSCSAVG00000011781	-	84	50.625	ENSORLG00000010428	trnau1apa	57	50.625	Oryzias_latipes
ENSCSAVG00000011781	-	84	50.625	ENSORLG00020000926	trnau1ap	52	50.625	Oryzias_latipes_hni
ENSCSAVG00000011781	-	84	50.625	ENSORLG00015009858	trnau1ap	52	50.625	Oryzias_latipes_hsok
ENSCSAVG00000011781	-	84	50.625	ENSOMEG00000007873	trnau1apa	52	50.625	Oryzias_melastigma
ENSCSAVG00000011781	-	90	51.462	ENSOGAG00000002274	TRNAU1AP	59	51.462	Otolemur_garnettii
ENSCSAVG00000011781	-	90	51.462	ENSOARG00000002843	TRNAU1AP	59	51.462	Ovis_aries
ENSCSAVG00000011781	-	98	44.681	ENSPPAG00000033927	TRNAU1AP	79	45.455	Pan_paniscus
ENSCSAVG00000011781	-	90	51.462	ENSPPRG00000004416	TRNAU1AP	59	51.462	Panthera_pardus
ENSCSAVG00000011781	-	90	51.462	ENSPTIG00000016677	TRNAU1AP	59	51.462	Panthera_tigris_altaica
ENSCSAVG00000011781	-	77	53.425	ENSPTRG00000000434	-	56	53.425	Pan_troglodytes
ENSCSAVG00000011781	-	98	44.681	ENSPANG00000016019	TRNAU1AP	99	44.681	Papio_anubis
ENSCSAVG00000011781	-	86	51.534	ENSPKIG00000015511	trnau1apa	53	51.534	Paramormyrops_kingsleyae
ENSCSAVG00000011781	-	87	52.121	ENSPSIG00000006864	TRNAU1AP	60	52.121	Pelodiscus_sinensis
ENSCSAVG00000011781	-	85	49.689	ENSPMGG00000023893	trnau1apa	56	49.689	Periophthalmus_magnuspinnatus
ENSCSAVG00000011781	-	98	44.681	ENSPEMG00000007877	Trnau1ap	99	44.681	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011781	-	87	45.238	ENSPMAG00000000592	trnau1apa	92	45.238	Petromyzon_marinus
ENSCSAVG00000011781	-	90	51.744	ENSPMAG00000005934	trnau1apa	77	51.744	Petromyzon_marinus
ENSCSAVG00000011781	-	84	50.000	ENSPFOG00000008100	trnau1apa	71	32.780	Poecilia_formosa
ENSCSAVG00000011781	-	84	50.000	ENSPLAG00000010236	trnau1apa	74	32.780	Poecilia_latipinna
ENSCSAVG00000011781	-	86	49.080	ENSPMEG00000016387	trnau1apa	59	47.399	Poecilia_mexicana
ENSCSAVG00000011781	-	91	47.126	ENSPREG00000019821	trnau1apa	58	50.000	Poecilia_reticulata
ENSCSAVG00000011781	-	98	44.681	ENSPPYG00000001639	-	77	30.736	Pongo_abelii
ENSCSAVG00000011781	-	98	44.681	ENSPCOG00000027712	-	99	37.500	Propithecus_coquereli
ENSCSAVG00000011781	-	65	45.968	ENSPCOG00000023470	-	51	45.968	Propithecus_coquereli
ENSCSAVG00000011781	-	90	51.462	ENSPVAG00000017214	TRNAU1AP	59	51.462	Pteropus_vampyrus
ENSCSAVG00000011781	-	84	47.879	ENSPNYG00000010130	trnau1apa	64	47.879	Pundamilia_nyererei
ENSCSAVG00000011781	-	88	44.910	ENSPNAG00000024905	trnau1apa	60	44.654	Pygocentrus_nattereri
ENSCSAVG00000011781	-	90	51.462	ENSRNOG00000055344	Trnau1ap	58	51.462	Rattus_norvegicus
ENSCSAVG00000011781	-	98	44.681	ENSRBIG00000029083	TRNAU1AP	99	44.681	Rhinopithecus_bieti
ENSCSAVG00000011781	-	98	44.681	ENSRROG00000029128	TRNAU1AP	99	44.681	Rhinopithecus_roxellana
ENSCSAVG00000011781	-	98	44.681	ENSSBOG00000021299	TRNAU1AP	99	44.681	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011781	-	90	51.462	ENSSHAG00000008108	TRNAU1AP	59	51.462	Sarcophilus_harrisii
ENSCSAVG00000011781	-	84	47.500	ENSSMAG00000020851	trnau1apa	52	47.205	Scophthalmus_maximus
ENSCSAVG00000011781	-	84	48.750	ENSSDUG00000011734	trnau1apa	71	31.429	Seriola_dumerili
ENSCSAVG00000011781	-	66	43.651	ENSSLDG00000012101	trnau1apa	50	43.651	Seriola_lalandi_dorsalis
ENSCSAVG00000011781	-	90	50.877	ENSSARG00000007536	TRNAU1AP	61	50.877	Sorex_araneus
ENSCSAVG00000011781	-	87	51.515	ENSSPUG00000010400	-	58	51.515	Sphenodon_punctatus
ENSCSAVG00000011781	-	87	37.561	ENSSPUG00000010415	-	98	32.683	Sphenodon_punctatus
ENSCSAVG00000011781	-	84	50.000	ENSSPAG00000005029	trnau1apa	52	50.000	Stegastes_partitus
ENSCSAVG00000011781	-	90	51.462	ENSSSCG00000030284	TRNAU1AP	99	35.096	Sus_scrofa
ENSCSAVG00000011781	-	90	51.462	ENSTGUG00000000735	-	61	51.462	Taeniopygia_guttata
ENSCSAVG00000011781	-	84	50.000	ENSTRUG00000003352	trnau1apa	52	50.000	Takifugu_rubripes
ENSCSAVG00000011781	-	91	48.555	ENSTNIG00000006129	trnau1apa	55	48.824	Tetraodon_nigroviridis
ENSCSAVG00000011781	-	97	38.496	ENSTBEG00000008049	-	79	38.053	Tupaia_belangeri
ENSCSAVG00000011781	-	90	51.462	ENSTTRG00000001854	TRNAU1AP	59	51.462	Tursiops_truncatus
ENSCSAVG00000011781	-	90	51.462	ENSUAMG00000008789	TRNAU1AP	62	51.462	Ursus_americanus
ENSCSAVG00000011781	-	90	51.462	ENSUMAG00000011068	TRNAU1AP	99	34.615	Ursus_maritimus
ENSCSAVG00000011781	-	98	38.865	ENSVPAG00000006778	TRNAU1AP	68	36.245	Vicugna_pacos
ENSCSAVG00000011781	-	90	51.462	ENSVVUG00000012518	TRNAU1AP	57	51.462	Vulpes_vulpes
ENSCSAVG00000011781	-	84	50.000	ENSXMAG00000017361	trnau1apa	71	32.780	Xiphophorus_maculatus