EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000000122 (Gene tree)
Gene ID: 103382296
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 10092 bases
Position: chr1:2509449-2519540
Accession: 103382296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000000132	PWI	PF01480.17	7.8e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000000156	-	2559	XM_008315078	ENSCSEP00000000132	852 (aa)	XP_008313300	-

Gene Model

Click here to download ENSCSEG00000000122's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000000122's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000000122	srrm1	100	79.432	ENSMAMG00000010305	srrm1	100	78.864	Mastacembelus_armatus
ENSCSEG00000000122	srrm1	67	77.372	ENSPKIG00000008252	srrm1	60	77.407	Paramormyrops_kingsleyae
ENSCSEG00000000122	srrm1	57	68.725	ENSPMEG00000002603	srrm1	60	67.606	Poecilia_mexicana
ENSCSEG00000000122	srrm1	100	81.932	ENSSDUG00000012967	srrm1	100	80.000	Seriola_dumerili
ENSCSEG00000000122	srrm1	59	77.519	ENSSLDG00000012771	srrm1	100	78.774	Seriola_lalandi_dorsalis
ENSCSEG00000000122	srrm1	59	69.498	ENSXMAG00000018863	srrm1	58	70.077	Xiphophorus_maculatus