EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSEG00000000130 (Gene tree)
Gene ID
103383161
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Plus strand
Length
11637 bases
Position
chr1:2602094-2613730
Accession
103383161
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSEP00000000142PABPPF00658.181.3e-3011
ENSCSEP00000000142RRM_5PF13893.62.9e-0911
ENSCSEP00000000142RRM_1PF00076.225.2e-9114
ENSCSEP00000000142RRM_1PF00076.225.2e-9124
ENSCSEP00000000142RRM_1PF00076.225.2e-9134
ENSCSEP00000000142RRM_1PF00076.225.2e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSET00000000166-2616XM_008316233ENSCSEP00000000142627 (aa)XP_008314455UPI000495410B
Gene Model
Click here to download ENSCSEG00000000130's gene model file
Pathways
Pathway IDPathway NameSource
csem03013RNA transportKEGG
csem03015mRNA surveillance pathwayKEGG
csem03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000000130's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSEG00000000130pabpc45730.519ENSCSEG00000015089ncl5130.519
ENSCSEG00000000130pabpc45837.500ENSCSEG00000008675celf16337.500
ENSCSEG00000000130pabpc49765.789ENSCSEG00000021295pabpc1l9965.296
ENSCSEG00000000130pabpc45641.429ENSCSEG00000008180rbms2b6032.990
ENSCSEG00000000130pabpc45930.000ENSCSEG00000006663trnau1apa7230.000
ENSCSEG00000000130pabpc45934.737ENSCSEG00000003790rbms2a6233.981
ENSCSEG00000000130pabpc45832.237ENSCSEG00000000688-8930.952
ENSCSEG00000000130pabpc49875.475ENSCSEG00000015241-9975.000
ENSCSEG00000000130pabpc46033.010ENSCSEG00000010011RBMS35133.010
ENSCSEG00000000130pabpc49975.743ENSCSEG00000013324pabpc1a9975.743
ENSCSEG00000000130pabpc45936.145ENSCSEG00000006335elavl28536.145
ENSCSEG00000000130pabpc46034.940ENSCSEG00000020141elavl48434.940
ENSCSEG00000000130pabpc45330.263ENSCSEG00000014051-9330.263
ENSCSEG00000000130pabpc46033.010ENSCSEG00000014677-6033.010
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSEG00000000130pabpc410084.395ENSG00000090621PABPC49996.396Homo_sapiens
ENSCSEG00000000130pabpc49996.602ENSAPOG00000001161pabpc410096.172Acanthochromis_polyacanthus
ENSCSEG00000000130pabpc49849.518ENSAMEG00000015083-9948.077Ailuropoda_melanoleuca
ENSCSEG00000000130pabpc410079.671ENSAMEG00000011535-10079.073Ailuropoda_melanoleuca
ENSCSEG00000000130pabpc410094.937ENSACIG00000023343pabpc410094.937Amphilophus_citrinellus
ENSCSEG00000000130pabpc410096.491ENSAOCG00000021529pabpc410096.491Amphiprion_ocellaris
ENSCSEG00000000130pabpc410096.491ENSAPEG00000019196pabpc410096.491Amphiprion_percula
ENSCSEG00000000130pabpc49996.284ENSATEG00000007402pabpc410096.019Anabas_testudineus
ENSCSEG00000000130pabpc49985.174ENSAPLG00000009729-9984.543Anas_platyrhynchos
ENSCSEG00000000130pabpc49884.902ENSACAG00000002544PABPC49984.192Anolis_carolinensis
ENSCSEG00000000130pabpc410082.426ENSANAG00000025079PABPC410082.344Aotus_nancymaae
ENSCSEG00000000130pabpc410095.853ENSACLG00000019558pabpc410095.853Astatotilapia_calliptera
ENSCSEG00000000130pabpc49986.212ENSAMXG00000018779pabpc49986.212Astyanax_mexicanus
ENSCSEG00000000130pabpc45883.832ENSBTAG00000048536-9383.832Bos_taurus
ENSCSEG00000000130pabpc410080.606ENSBTAG00000017125PABPC410080.734Bos_taurus
ENSCSEG00000000130pabpc410082.426ENSCJAG00000002512-10082.344Callithrix_jacchus
ENSCSEG00000000130pabpc47678.541ENSCJAG00000045953-9075.309Callithrix_jacchus
ENSCSEG00000000130pabpc410083.125ENSCAFG00000003081PABPC410082.500Canis_familiaris
ENSCSEG00000000130pabpc410079.821ENSCAFG00020004161PABPC410079.223Canis_lupus_dingo
ENSCSEG00000000130pabpc410065.123ENSCHIG00000023385-10064.660Capra_hircus
ENSCSEG00000000130pabpc410079.372ENSCHIG00000019398-10078.924Capra_hircus
ENSCSEG00000000130pabpc410082.969ENSTSYG00000006532PABPC410082.344Carlito_syrichta
ENSCSEG00000000130pabpc49982.456ENSCAPG00000015984PABPC410081.818Cavia_aperea
ENSCSEG00000000130pabpc410082.171ENSCPOG00000009552PABPC410082.500Cavia_porcellus
ENSCSEG00000000130pabpc410082.582ENSCCAG00000037306PABPC410082.500Cebus_capucinus
ENSCSEG00000000130pabpc410082.426ENSCATG00000042164PABPC410082.344Cercocebus_atys
ENSCSEG00000000130pabpc410082.016ENSCLAG00000011899PABPC410082.344Chinchilla_lanigera
ENSCSEG00000000130pabpc410079.522ENSCSAG00000001135PABPC410079.073Chlorocebus_sabaeus
ENSCSEG00000000130pabpc48788.947ENSCHOG00000005327PABPC47989.488Choloepus_hoffmanni
ENSCSEG00000000130pabpc49986.120ENSCPBG00000001038PABPC49985.489Chrysemys_picta_bellii
ENSCSEG00000000130pabpc49982.650ENSCANG00000034177PABPC410082.567Colobus_angolensis_palliatus
ENSCSEG00000000130pabpc49884.715ENSCGRG00001018166Pabpc410083.439Cricetulus_griseus_chok1gshd
ENSCSEG00000000130pabpc49784.983ENSCGRG00000009777Pabpc410083.683Cricetulus_griseus_crigri
ENSCSEG00000000130pabpc49995.469ENSCVAG00000019246pabpc410095.469Cyprinodon_variegatus
ENSCSEG00000000130pabpc49891.866ENSDARG00000059259pabpc410091.570Danio_rerio
ENSCSEG00000000130pabpc49981.643ENSDNOG00000018444-10081.195Dasypus_novemcinctus
ENSCSEG00000000130pabpc410080.635ENSDORG00000011581Pabpc410081.011Dipodomys_ordii
ENSCSEG00000000130pabpc410090.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSCSEG00000000130pabpc48554.128ENSETEG00000009172-9952.166Echinops_telfairi
ENSCSEG00000000130pabpc49976.032ENSEBUG00000000992pabpc410075.714Eptatretus_burgeri
ENSCSEG00000000130pabpc49676.911ENSEBUG00000013782pabpc49976.433Eptatretus_burgeri
ENSCSEG00000000130pabpc410079.522ENSEASG00005014119PABPC410079.073Equus_asinus_asinus
ENSCSEG00000000130pabpc410079.522ENSECAG00000009396PABPC410079.073Equus_caballus
ENSCSEG00000000130pabpc49778.528ENSEEUG00000002962PABPC410077.429Erinaceus_europaeus
ENSCSEG00000000130pabpc49892.675ENSELUG00000003195pabpc410092.019Esox_lucius
ENSCSEG00000000130pabpc410083.125ENSFCAG00000015254-10082.500Felis_catus
ENSCSEG00000000130pabpc49985.624ENSFALG00000000543PABPC49984.992Ficedula_albicollis
ENSCSEG00000000130pabpc410079.372ENSFDAG00000020016-10079.073Fukomys_damarensis
ENSCSEG00000000130pabpc48952.431ENSFDAG00000010581-9950.344Fukomys_damarensis
ENSCSEG00000000130pabpc410095.694ENSFHEG00000007548pabpc410095.694Fundulus_heteroclitus
ENSCSEG00000000130pabpc410090.282ENSGMOG00000019025pabpc410090.282Gadus_morhua
ENSCSEG00000000130pabpc49985.962ENSGALG00000003800PABPC49985.331Gallus_gallus
ENSCSEG00000000130pabpc49996.890ENSGAFG00000018195pabpc410096.890Gambusia_affinis
ENSCSEG00000000130pabpc410094.099ENSGACG00000007179pabpc410094.099Gasterosteus_aculeatus
ENSCSEG00000000130pabpc49986.278ENSGAGG00000001888PABPC49985.647Gopherus_agassizii
ENSCSEG00000000130pabpc410082.426ENSGGOG00000004002PABPC410082.344Gorilla_gorilla
ENSCSEG00000000130pabpc410095.694ENSHBUG00000020206pabpc410095.694Haplochromis_burtoni
ENSCSEG00000000130pabpc410082.016ENSHGLG00000011162PABPC410082.344Heterocephalus_glaber_female
ENSCSEG00000000130pabpc410082.016ENSHGLG00100001580PABPC410082.344Heterocephalus_glaber_male
ENSCSEG00000000130pabpc410094.577ENSHCOG00000012694pabpc410095.534Hippocampus_comes
ENSCSEG00000000130pabpc49791.613ENSIPUG00000016620pabpc49991.125Ictalurus_punctatus
ENSCSEG00000000130pabpc410084.420ENSSTOG00000010416PABPC410083.784Ictidomys_tridecemlineatus
ENSCSEG00000000130pabpc410079.939ENSJJAG00000007781Pabpc410079.786Jaculus_jaculus
ENSCSEG00000000130pabpc410094.586ENSKMAG00000013597pabpc410094.586Kryptolebias_marmoratus
ENSCSEG00000000130pabpc410095.556ENSLBEG00000013654pabpc410095.556Labrus_bergylta
ENSCSEG00000000130pabpc49986.299ENSLACG00000011907PABPC49985.827Latimeria_chalumnae
ENSCSEG00000000130pabpc410090.596ENSLOCG00000001877pabpc410090.596Lepisosteus_oculatus
ENSCSEG00000000130pabpc410084.395ENSLAFG00000000151PABPC410083.758Loxodonta_africana
ENSCSEG00000000130pabpc410082.426ENSMFAG00000041481PABPC410082.344Macaca_fascicularis
ENSCSEG00000000130pabpc410079.522ENSMMUG00000007497PABPC410079.073Macaca_mulatta
ENSCSEG00000000130pabpc410082.426ENSMNEG00000043054PABPC410082.188Macaca_nemestrina
ENSCSEG00000000130pabpc410082.426ENSMLEG00000040716PABPC410082.344Mandrillus_leucophaeus
ENSCSEG00000000130pabpc410096.810ENSMAMG00000010025pabpc410096.810Mastacembelus_armatus
ENSCSEG00000000130pabpc410095.853ENSMZEG00005006141pabpc410095.853Maylandia_zebra
ENSCSEG00000000130pabpc49882.741ENSMGAG00000005408PABPC49981.895Meleagris_gallopavo
ENSCSEG00000000130pabpc45880.117ENSMAUG00000004089-9280.117Mesocricetus_auratus
ENSCSEG00000000130pabpc47789.583ENSMAUG00000019763-8485.321Mesocricetus_auratus
ENSCSEG00000000130pabpc47278.571ENSMAUG00000001295-9777.619Mesocricetus_auratus
ENSCSEG00000000130pabpc49975.000ENSMICG00000036729-10073.750Microcebus_murinus
ENSCSEG00000000130pabpc48884.116ENSMICG00000016633-10083.604Microcebus_murinus
ENSCSEG00000000130pabpc410083.016ENSMOCG00000006763Pabpc410082.484Microtus_ochrogaster
ENSCSEG00000000130pabpc410092.185ENSMMOG00000002363pabpc410091.866Mola_mola
ENSCSEG00000000130pabpc46070.400ENSMODG00000018051-9670.400Monodelphis_domestica
ENSCSEG00000000130pabpc49783.051ENSMODG00000017657-9981.970Monodelphis_domestica
ENSCSEG00000000130pabpc410096.343ENSMALG00000011017pabpc410096.343Monopterus_albus
ENSCSEG00000000130pabpc410078.475MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSCSEG00000000130pabpc49971.256MGP_CAROLIEiJ_G0024864-10072.935Mus_caroli
ENSCSEG00000000130pabpc410084.102ENSMUSG00000011257Pabpc410094.643Mus_musculus
ENSCSEG00000000130pabpc49979.091MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSCSEG00000000130pabpc49970.077MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSCSEG00000000130pabpc49546.787ENSMPUG00000006836-10046.293Mustela_putorius_furo
ENSCSEG00000000130pabpc410079.522ENSMPUG00000014414-10079.223Mustela_putorius_furo
ENSCSEG00000000130pabpc410084.395ENSMLUG00000012068PABPC410083.599Myotis_lucifugus
ENSCSEG00000000130pabpc410084.395ENSNGAG00000018292Pabpc410083.758Nannospalax_galili
ENSCSEG00000000130pabpc46596.988ENSNBRG00000010047-7296.988Neolamprologus_brichardi
ENSCSEG00000000130pabpc46098.558ENSNBRG00000009708pabpc49898.558Neolamprologus_brichardi
ENSCSEG00000000130pabpc410082.426ENSNLEG00000011928PABPC410082.344Nomascus_leucogenys
ENSCSEG00000000130pabpc48592.063ENSOPRG00000011984PABPC48692.063Ochotona_princeps
ENSCSEG00000000130pabpc45382.857ENSODEG00000013457-10082.857Octodon_degus
ENSCSEG00000000130pabpc49973.499ENSODEG00000017434-10072.878Octodon_degus
ENSCSEG00000000130pabpc410082.500ENSODEG00000006592-10081.875Octodon_degus
ENSCSEG00000000130pabpc410095.694ENSONIG00000008176pabpc410095.694Oreochromis_niloticus
ENSCSEG00000000130pabpc49985.489ENSOANG00000010001PABPC49984.858Ornithorhynchus_anatinus
ENSCSEG00000000130pabpc49579.906ENSOCUG00000000562PABPC48879.435Oryctolagus_cuniculus
ENSCSEG00000000130pabpc49995.988ENSORLG00000017479pabpc49995.988Oryzias_latipes
ENSCSEG00000000130pabpc49995.988ENSORLG00020018644pabpc49995.988Oryzias_latipes_hni
ENSCSEG00000000130pabpc49995.988ENSORLG00015015042pabpc49995.988Oryzias_latipes_hsok
ENSCSEG00000000130pabpc49995.146ENSOMEG00000014410pabpc410094.745Oryzias_melastigma
ENSCSEG00000000130pabpc410081.098ENSOGAG00000004067PABPC410080.640Otolemur_garnettii
ENSCSEG00000000130pabpc410079.372ENSOARG00000020060PABPC410078.924Ovis_aries
ENSCSEG00000000130pabpc410082.426ENSPPAG00000043625PABPC410082.344Pan_paniscus
ENSCSEG00000000130pabpc410083.125ENSPPRG00000024727PABPC410082.500Panthera_pardus
ENSCSEG00000000130pabpc410083.125ENSPTIG00000005829PABPC410082.500Panthera_tigris_altaica
ENSCSEG00000000130pabpc410082.426ENSPTRG00000000573PABPC410082.344Pan_troglodytes
ENSCSEG00000000130pabpc410082.426ENSPANG00000009484PABPC410082.344Papio_anubis
ENSCSEG00000000130pabpc410089.812ENSPKIG00000025356pabpc410089.812Paramormyrops_kingsleyae
ENSCSEG00000000130pabpc49986.435ENSPSIG00000016892PABPC49985.804Pelodiscus_sinensis
ENSCSEG00000000130pabpc410090.909ENSPMGG00000009073pabpc410090.112Periophthalmus_magnuspinnatus
ENSCSEG00000000130pabpc410079.141ENSPEMG00000024193-10079.658Peromyscus_maniculatus_bairdii
ENSCSEG00000000130pabpc410081.705ENSPEMG00000023569-10082.188Peromyscus_maniculatus_bairdii
ENSCSEG00000000130pabpc49575.210ENSPMAG00000007885pabpc410074.390Petromyzon_marinus
ENSCSEG00000000130pabpc48875.087ENSPMAG00000002836pabpc410075.958Petromyzon_marinus
ENSCSEG00000000130pabpc49786.356ENSPCIG00000020674PABPC49993.932Phascolarctos_cinereus
ENSCSEG00000000130pabpc410094.737ENSPFOG00000002682pabpc410094.737Poecilia_formosa
ENSCSEG00000000130pabpc410094.896ENSPLAG00000010112pabpc410094.896Poecilia_latipinna
ENSCSEG00000000130pabpc49895.455ENSPMEG00000019739pabpc410094.896Poecilia_mexicana
ENSCSEG00000000130pabpc410095.215ENSPREG00000001589pabpc410095.215Poecilia_reticulata
ENSCSEG00000000130pabpc410079.522ENSPPYG00000001506PABPC410079.073Pongo_abelii
ENSCSEG00000000130pabpc410074.738ENSPCAG00000003341PABPC410074.290Procavia_capensis
ENSCSEG00000000130pabpc410082.298ENSPCOG00000023725-10082.215Propithecus_coquereli
ENSCSEG00000000130pabpc49969.444ENSPCOG00000025882-9969.444Propithecus_coquereli
ENSCSEG00000000130pabpc49878.477ENSPVAG00000002187PABPC410077.815Pteropus_vampyrus
ENSCSEG00000000130pabpc410095.853ENSPNYG00000006134pabpc410095.853Pundamilia_nyererei
ENSCSEG00000000130pabpc410092.417ENSPNAG00000024355pabpc410092.417Pygocentrus_nattereri
ENSCSEG00000000130pabpc410080.333ENSRNOG00000015642Pabpc410080.551Rattus_norvegicus
ENSCSEG00000000130pabpc410078.215ENSRNOG00000028592AABR07035074.110078.407Rattus_norvegicus
ENSCSEG00000000130pabpc410082.426ENSRBIG00000039761PABPC410082.344Rhinopithecus_bieti
ENSCSEG00000000130pabpc410082.426ENSRROG00000033355PABPC410082.344Rhinopithecus_roxellana
ENSCSEG00000000130pabpc410082.582ENSSBOG00000026193PABPC410082.500Saimiri_boliviensis_boliviensis
ENSCSEG00000000130pabpc49786.196ENSSHAG00000018139PABPC49985.016Sarcophilus_harrisii
ENSCSEG00000000130pabpc49990.196ENSSFOG00015023514pabpc410090.196Scleropages_formosus
ENSCSEG00000000130pabpc410095.694ENSSMAG00000009007pabpc410095.694Scophthalmus_maximus
ENSCSEG00000000130pabpc410096.332ENSSDUG00000012683pabpc410096.332Seriola_dumerili
ENSCSEG00000000130pabpc410096.332ENSSLDG00000013025pabpc410096.332Seriola_lalandi_dorsalis
ENSCSEG00000000130pabpc410073.094ENSSARG00000000310PABPC410072.646Sorex_araneus
ENSCSEG00000000130pabpc49986.943ENSSPUG00000003204PABPC49986.306Sphenodon_punctatus
ENSCSEG00000000130pabpc410096.810ENSSPAG00000009252pabpc410096.810Stegastes_partitus
ENSCSEG00000000130pabpc48844.128ENSSSCG00000036170-9544.128Sus_scrofa
ENSCSEG00000000130pabpc410082.737ENSSSCG00000003660-10082.344Sus_scrofa
ENSCSEG00000000130pabpc49981.627ENSTGUG00000001266PABPC49981.476Taeniopygia_guttata
ENSCSEG00000000130pabpc410094.737ENSTRUG00000005907pabpc410094.737Takifugu_rubripes
ENSCSEG00000000130pabpc410088.038ENSTNIG00000016902pabpc410087.719Tetraodon_nigroviridis
ENSCSEG00000000130pabpc49968.709ENSTBEG00000009035PABPC410068.377Tupaia_belangeri
ENSCSEG00000000130pabpc49961.770ENSTTRG00000014340PABPC410067.053Tursiops_truncatus
ENSCSEG00000000130pabpc410083.125ENSUAMG00000000303PABPC410082.500Ursus_americanus
ENSCSEG00000000130pabpc410089.116ENSUMAG00000019585PABPC410089.885Ursus_maritimus
ENSCSEG00000000130pabpc47169.912ENSVPAG00000010041PABPC47369.912Vicugna_pacos
ENSCSEG00000000130pabpc410083.125ENSVVUG00000005215PABPC410082.500Vulpes_vulpes
ENSCSEG00000000130pabpc46796.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSCSEG00000000130pabpc49982.334ENSXETG00000010946pabpc49981.703Xenopus_tropicalis
ENSCSEG00000000130pabpc49996.042ENSXCOG00000013190pabpc49693.868Xiphophorus_couchianus
ENSCSEG00000000130pabpc410095.215ENSXMAG00000019007pabpc410095.215Xiphophorus_maculatus

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