EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000000328 (Gene tree)
Gene ID: 103383341
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 11130 bases
Position: chr9:2381982-2393111
Accession: 103383341
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000000469	ResIII	PF04851.15	6.4e-11	1	1
ENSCSEP00000000457	ResIII	PF04851.15	6.9e-11	1	1
ENSCSEP00000000469	DEAD	PF00270.29	3.5e-06	1	1
ENSCSEP00000000457	DEAD	PF00270.29	3.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000000482	-	7725	-	ENSCSEP00000000457	1085 (aa)	-	-
ENSCSET00000000495	-	6813	XM_008316424	ENSCSEP00000000469	1034 (aa)	XP_008314646	UPI000494F6E5

Gene Model

Click here to download ENSCSEG00000000328's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000000328's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000000328	smarca5	95	83.114	ENSG00000102038	SMARCA1	92	83.709	Homo_sapiens
ENSCSEG00000000328	smarca5	100	97.394	ENSAPOG00000016035	smarca5	100	97.394	Acanthochromis_polyacanthus
ENSCSEG00000000328	smarca5	95	81.936	ENSAMEG00000015218	SMARCA1	92	82.692	Ailuropoda_melanoleuca
ENSCSEG00000000328	smarca5	87	97.225	ENSACIG00000016982	smarca5	100	97.225	Amphilophus_citrinellus
ENSCSEG00000000328	smarca5	100	97.394	ENSAOCG00000015578	smarca5	100	97.394	Amphiprion_ocellaris
ENSCSEG00000000328	smarca5	100	97.394	ENSAPEG00000011117	smarca5	99	98.463	Amphiprion_percula
ENSCSEG00000000328	smarca5	100	97.005	ENSATEG00000012894	smarca5	100	97.005	Anabas_testudineus
ENSCSEG00000000328	smarca5	95	84.012	ENSAPLG00000013149	SMARCA1	99	84.324	Anas_platyrhynchos
ENSCSEG00000000328	smarca5	98	81.961	ENSACAG00000011376	SMARCA1	93	84.631	Anolis_carolinensis
ENSCSEG00000000328	smarca5	95	78.463	ENSANAG00000023098	SMARCA1	92	78.996	Aotus_nancymaae
ENSCSEG00000000328	smarca5	100	96.332	ENSACLG00000025356	smarca5	100	96.332	Astatotilapia_calliptera
ENSCSEG00000000328	smarca5	90	84.318	ENSAMXG00000011227	smarca1	99	85.525	Astyanax_mexicanus
ENSCSEG00000000328	smarca5	100	91.547	ENSAMXG00000005709	smarca5	100	91.354	Astyanax_mexicanus
ENSCSEG00000000328	smarca5	95	82.927	ENSBTAG00000002292	SMARCA1	92	83.247	Bos_taurus
ENSCSEG00000000328	smarca5	97	62.734	WBGene00002169	isw-1	95	63.880	Caenorhabditis_elegans
ENSCSEG00000000328	smarca5	95	83.114	ENSCJAG00000002868	SMARCA1	92	83.709	Callithrix_jacchus
ENSCSEG00000000328	smarca5	95	73.784	ENSCAFG00000018673	SMARCA1	99	75.176	Canis_familiaris
ENSCSEG00000000328	smarca5	95	83.030	ENSCAFG00020001751	SMARCA1	92	83.811	Canis_lupus_dingo
ENSCSEG00000000328	smarca5	95	82.626	ENSCHIG00000009837	SMARCA1	92	83.402	Capra_hircus
ENSCSEG00000000328	smarca5	95	83.030	ENSTSYG00000004240	SMARCA1	96	84.254	Carlito_syrichta
ENSCSEG00000000328	smarca5	95	81.627	ENSCPOG00000013601	SMARCA1	93	82.383	Cavia_porcellus
ENSCSEG00000000328	smarca5	95	80.485	ENSCCAG00000030817	SMARCA1	92	81.045	Cebus_capucinus
ENSCSEG00000000328	smarca5	95	82.118	ENSCATG00000015921	SMARCA1	92	84.503	Cercocebus_atys
ENSCSEG00000000328	smarca5	95	82.222	ENSCLAG00000002171	SMARCA1	92	82.992	Chinchilla_lanigera
ENSCSEG00000000328	smarca5	95	83.114	ENSCSAG00000008460	SMARCA1	92	83.709	Chlorocebus_sabaeus
ENSCSEG00000000328	smarca5	95	83.992	ENSCPBG00000001146	SMARCA1	92	84.631	Chrysemys_picta_bellii
ENSCSEG00000000328	smarca5	96	73.857	ENSCING00000004110	swi/snf	97	75.306	Ciona_intestinalis
ENSCSEG00000000328	smarca5	98	73.111	ENSCSAVG00000004620	-	99	76.174	Ciona_savignyi
ENSCSEG00000000328	smarca5	95	83.215	ENSCANG00000007183	SMARCA1	92	83.811	Colobus_angolensis_palliatus
ENSCSEG00000000328	smarca5	95	82.121	ENSCGRG00001010776	Smarca1	92	82.684	Cricetulus_griseus_chok1gshd
ENSCSEG00000000328	smarca5	93	82.389	ENSCGRG00000015301	Smarca1	96	82.812	Cricetulus_griseus_crigri
ENSCSEG00000000328	smarca5	100	96.135	ENSCVAG00000008668	smarca5	99	97.285	Cyprinodon_variegatus
ENSCSEG00000000328	smarca5	94	82.748	ENSDARG00000012776	smarca1	96	82.814	Danio_rerio
ENSCSEG00000000328	smarca5	100	91.426	ENSDARG00000052348	smarca5	100	91.426	Danio_rerio
ENSCSEG00000000328	smarca5	93	83.540	ENSDNOG00000004315	SMARCA1	90	84.418	Dasypus_novemcinctus
ENSCSEG00000000328	smarca5	96	82.038	ENSDORG00000009270	Smarca1	92	84.293	Dipodomys_ordii
ENSCSEG00000000328	smarca5	95	74.194	FBgn0011604	Iswi	95	74.492	Drosophila_melanogaster
ENSCSEG00000000328	smarca5	78	81.818	ENSETEG00000017426	SMARCA1	85	81.818	Echinops_telfairi
ENSCSEG00000000328	smarca5	97	80.258	ENSEBUG00000001239	smarca5	94	83.596	Eptatretus_burgeri
ENSCSEG00000000328	smarca5	95	78.947	ENSEASG00005008218	SMARCA1	99	79.837	Equus_asinus_asinus
ENSCSEG00000000328	smarca5	95	82.929	ENSECAG00000012106	SMARCA1	92	83.709	Equus_caballus
ENSCSEG00000000328	smarca5	77	84.106	ENSEEUG00000014927	SMARCA1	82	84.106	Erinaceus_europaeus
ENSCSEG00000000328	smarca5	94	84.016	ENSELUG00000010515	smarca1	95	84.906	Esox_lucius
ENSCSEG00000000328	smarca5	95	82.929	ENSFCAG00000018496	SMARCA1	92	83.709	Felis_catus
ENSCSEG00000000328	smarca5	88	85.011	ENSFALG00000000209	SMARCA1	98	85.011	Ficedula_albicollis
ENSCSEG00000000328	smarca5	93	82.209	ENSFDAG00000009818	SMARCA1	95	82.834	Fukomys_damarensis
ENSCSEG00000000328	smarca5	100	94.551	ENSFHEG00000007687	smarca5	100	94.168	Fundulus_heteroclitus
ENSCSEG00000000328	smarca5	96	82.797	ENSGALG00000008431	SMARCA1	97	82.696	Gallus_gallus
ENSCSEG00000000328	smarca5	100	96.135	ENSGAFG00000017731	smarca5	100	96.135	Gambusia_affinis
ENSCSEG00000000328	smarca5	94	84.568	ENSGAGG00000023575	SMARCA1	99	84.568	Gopherus_agassizii
ENSCSEG00000000328	smarca5	70	96.000	ENSGGOG00000012841	-	91	79.971	Gorilla_gorilla
ENSCSEG00000000328	smarca5	95	81.818	ENSHGLG00000003080	SMARCA1	92	82.582	Heterocephalus_glaber_female
ENSCSEG00000000328	smarca5	95	81.325	ENSHGLG00100001102	SMARCA1	98	82.077	Heterocephalus_glaber_male
ENSCSEG00000000328	smarca5	100	97.008	ENSHCOG00000005458	smarca5	100	97.008	Hippocampus_comes
ENSCSEG00000000328	smarca5	100	90.435	ENSIPUG00000005229	SMARCA5	99	91.471	Ictalurus_punctatus
ENSCSEG00000000328	smarca5	96	82.125	ENSIPUG00000016905	Smarca1	99	83.881	Ictalurus_punctatus
ENSCSEG00000000328	smarca5	95	82.727	ENSSTOG00000014524	SMARCA1	95	83.214	Ictidomys_tridecemlineatus
ENSCSEG00000000328	smarca5	95	81.709	ENSJJAG00000002593	Smarca1	97	79.534	Jaculus_jaculus
ENSCSEG00000000328	smarca5	100	96.039	ENSKMAG00000003777	smarca5	100	95.942	Kryptolebias_marmoratus
ENSCSEG00000000328	smarca5	94	96.516	ENSLBEG00000013295	SMARCA1	100	98.228	Labrus_bergylta
ENSCSEG00000000328	smarca5	100	96.422	ENSLBEG00000018112	smarca5	100	96.422	Labrus_bergylta
ENSCSEG00000000328	smarca5	94	85.155	ENSLACG00000016697	SMARCA1	95	85.155	Latimeria_chalumnae
ENSCSEG00000000328	smarca5	95	85.612	ENSLOCG00000014591	smarca1	95	85.846	Lepisosteus_oculatus
ENSCSEG00000000328	smarca5	95	81.727	ENSLAFG00000000896	SMARCA1	98	82.485	Loxodonta_africana
ENSCSEG00000000328	smarca5	95	83.114	ENSMFAG00000002117	SMARCA1	95	84.326	Macaca_fascicularis
ENSCSEG00000000328	smarca5	95	82.118	ENSMMUG00000008818	SMARCA1	97	84.615	Macaca_mulatta
ENSCSEG00000000328	smarca5	95	82.118	ENSMNEG00000041768	SMARCA1	95	84.326	Macaca_nemestrina
ENSCSEG00000000328	smarca5	95	83.114	ENSMLEG00000043198	SMARCA1	92	83.709	Mandrillus_leucophaeus
ENSCSEG00000000328	smarca5	100	96.824	ENSMAMG00000014294	smarca5	100	96.824	Mastacembelus_armatus
ENSCSEG00000000328	smarca5	100	96.332	ENSMZEG00005009369	smarca5	100	96.332	Maylandia_zebra
ENSCSEG00000000328	smarca5	95	82.482	ENSMGAG00000007042	SMARCA1	97	83.198	Meleagris_gallopavo
ENSCSEG00000000328	smarca5	93	82.080	ENSMAUG00000008133	Smarca1	92	82.708	Mesocricetus_auratus
ENSCSEG00000000328	smarca5	95	83.232	ENSMICG00000015768	SMARCA1	92	84.016	Microcebus_murinus
ENSCSEG00000000328	smarca5	95	81.206	ENSMOCG00000009464	Smarca1	92	82.110	Microtus_ochrogaster
ENSCSEG00000000328	smarca5	96	96.173	ENSMMOG00000005547	smarca5	100	96.173	Mola_mola
ENSCSEG00000000328	smarca5	97	81.962	ENSMODG00000013187	-	94	84.308	Monodelphis_domestica
ENSCSEG00000000328	smarca5	100	96.422	ENSMALG00000002081	smarca5	100	96.422	Monopterus_albus
ENSCSEG00000000328	smarca5	95	81.407	MGP_CAROLIEiJ_G0033034	Smarca1	92	82.917	Mus_caroli
ENSCSEG00000000328	smarca5	95	81.508	ENSMUSG00000031099	Smarca1	92	82.917	Mus_musculus
ENSCSEG00000000328	smarca5	95	81.579	MGP_PahariEiJ_G0031579	Smarca1	92	83.021	Mus_pahari
ENSCSEG00000000328	smarca5	95	81.508	MGP_SPRETEiJ_G0034192	Smarca1	92	82.917	Mus_spretus
ENSCSEG00000000328	smarca5	95	82.036	ENSMPUG00000017423	SMARCA1	87	82.794	Mustela_putorius_furo
ENSCSEG00000000328	smarca5	95	80.777	ENSMLUG00000029614	SMARCA1	92	81.212	Myotis_lucifugus
ENSCSEG00000000328	smarca5	93	82.595	ENSNGAG00000006492	Smarca1	92	83.229	Nannospalax_galili
ENSCSEG00000000328	smarca5	96	97.183	ENSNBRG00000004463	smarca5	99	97.183	Neolamprologus_brichardi
ENSCSEG00000000328	smarca5	95	81.419	ENSNLEG00000015179	SMARCA1	96	83.612	Nomascus_leucogenys
ENSCSEG00000000328	smarca5	89	76.103	ENSMEUG00000008819	SMARCA1	97	76.103	Notamacropus_eugenii
ENSCSEG00000000328	smarca5	96	80.478	ENSODEG00000012163	SMARCA1	92	82.730	Octodon_degus
ENSCSEG00000000328	smarca5	100	96.429	ENSONIG00000009993	smarca5	100	96.429	Oreochromis_niloticus
ENSCSEG00000000328	smarca5	94	84.774	ENSOANG00000002862	SMARCA1	99	84.774	Ornithorhynchus_anatinus
ENSCSEG00000000328	smarca5	95	83.181	ENSOCUG00000001047	SMARCA1	92	83.811	Oryctolagus_cuniculus
ENSCSEG00000000328	smarca5	100	95.669	ENSORLG00000021998	smarca5	100	95.861	Oryzias_latipes
ENSCSEG00000000328	smarca5	100	95.665	ENSORLG00020017679	smarca5	100	95.954	Oryzias_latipes_hni
ENSCSEG00000000328	smarca5	100	96.625	ENSORLG00015017210	smarca5	100	96.625	Oryzias_latipes_hsok
ENSCSEG00000000328	smarca5	100	96.525	ENSOMEG00000000086	smarca5	100	96.525	Oryzias_melastigma
ENSCSEG00000000328	smarca5	93	83.162	ENSOGAG00000004399	SMARCA1	90	83.878	Otolemur_garnettii
ENSCSEG00000000328	smarca5	94	83.333	ENSOARG00000014638	SMARCA1	99	83.402	Ovis_aries
ENSCSEG00000000328	smarca5	95	83.114	ENSPPAG00000034647	SMARCA1	92	83.709	Pan_paniscus
ENSCSEG00000000328	smarca5	95	83.030	ENSPPRG00000008929	SMARCA1	92	83.811	Panthera_pardus
ENSCSEG00000000328	smarca5	95	81.231	ENSPTIG00000000915	SMARCA1	96	81.974	Panthera_tigris_altaica
ENSCSEG00000000328	smarca5	95	83.114	ENSPTRG00000049876	SMARCA1	92	84.503	Pan_troglodytes
ENSCSEG00000000328	smarca5	95	83.114	ENSPANG00000003871	SMARCA1	92	83.709	Papio_anubis
ENSCSEG00000000328	smarca5	95	81.092	ENSPKIG00000013411	smarca1	96	83.718	Paramormyrops_kingsleyae
ENSCSEG00000000328	smarca5	94	84.568	ENSPSIG00000010101	SMARCA1	99	84.568	Pelodiscus_sinensis
ENSCSEG00000000328	smarca5	93	82.389	ENSPEMG00000017503	Smarca1	92	83.021	Peromyscus_maniculatus_bairdii
ENSCSEG00000000328	smarca5	94	84.631	ENSPCIG00000015460	SMARCA1	96	84.631	Phascolarctos_cinereus
ENSCSEG00000000328	smarca5	100	96.232	ENSPFOG00000007649	smarca5	100	96.232	Poecilia_formosa
ENSCSEG00000000328	smarca5	100	96.232	ENSPLAG00000003363	smarca5	100	96.232	Poecilia_latipinna
ENSCSEG00000000328	smarca5	100	96.329	ENSPMEG00000019849	smarca5	100	96.329	Poecilia_mexicana
ENSCSEG00000000328	smarca5	100	96.329	ENSPREG00000023250	smarca5	100	96.329	Poecilia_reticulata
ENSCSEG00000000328	smarca5	95	80.283	ENSPPYG00000020703	SMARCA1	92	80.840	Pongo_abelii
ENSCSEG00000000328	smarca5	75	78.125	ENSPCOG00000020722	SMARCA1	93	80.267	Propithecus_coquereli
ENSCSEG00000000328	smarca5	87	83.097	ENSPVAG00000003805	SMARCA1	84	83.180	Pteropus_vampyrus
ENSCSEG00000000328	smarca5	58	97.625	ENSPNYG00000012299	smarca5	92	97.625	Pundamilia_nyererei
ENSCSEG00000000328	smarca5	95	81.717	ENSRNOG00000003762	Smarca1	92	82.480	Rattus_norvegicus
ENSCSEG00000000328	smarca5	95	83.215	ENSRROG00000034167	SMARCA1	92	83.811	Rhinopithecus_roxellana
ENSCSEG00000000328	smarca5	94	83.538	ENSSBOG00000020641	SMARCA1	99	83.607	Saimiri_boliviensis_boliviensis
ENSCSEG00000000328	smarca5	94	79.424	ENSSHAG00000013518	SMARCA1	99	79.424	Sarcophilus_harrisii
ENSCSEG00000000328	smarca5	95	84.045	ENSSFOG00015009043	smarca1	95	84.702	Scleropages_formosus
ENSCSEG00000000328	smarca5	96	92.308	ENSSFOG00015016794	smarca5	100	93.196	Scleropages_formosus
ENSCSEG00000000328	smarca5	100	96.525	ENSSMAG00000004801	smarca5	100	96.525	Scophthalmus_maximus
ENSCSEG00000000328	smarca5	100	96.712	ENSSDUG00000020690	smarca5	100	96.712	Seriola_dumerili
ENSCSEG00000000328	smarca5	100	96.712	ENSSLDG00000025190	smarca5	100	96.712	Seriola_lalandi_dorsalis
ENSCSEG00000000328	smarca5	79	84.342	ENSSARG00000000842	SMARCA1	83	84.342	Sorex_araneus
ENSCSEG00000000328	smarca5	96	82.915	ENSSPUG00000000590	SMARCA1	98	81.764	Sphenodon_punctatus
ENSCSEG00000000328	smarca5	100	97.297	ENSSPAG00000002894	smarca5	100	97.297	Stegastes_partitus
ENSCSEG00000000328	smarca5	94	83.608	ENSSSCG00000012649	SMARCA1	98	80.156	Sus_scrofa
ENSCSEG00000000328	smarca5	95	83.707	ENSTGUG00000003899	-	99	84.016	Taeniopygia_guttata
ENSCSEG00000000328	smarca5	100	95.845	ENSTRUG00000014094	smarca5	100	95.845	Takifugu_rubripes
ENSCSEG00000000328	smarca5	98	94.581	ENSTNIG00000017717	smarca5	97	94.877	Tetraodon_nigroviridis
ENSCSEG00000000328	smarca5	86	82.262	ENSTBEG00000014973	SMARCA1	91	82.099	Tupaia_belangeri
ENSCSEG00000000328	smarca5	93	79.448	ENSTTRG00000006168	SMARCA1	98	79.938	Tursiops_truncatus
ENSCSEG00000000328	smarca5	95	82.929	ENSUAMG00000020201	SMARCA1	92	83.504	Ursus_americanus
ENSCSEG00000000328	smarca5	96	78.131	ENSUMAG00000004073	SMARCA1	95	85.608	Ursus_maritimus
ENSCSEG00000000328	smarca5	74	86.513	ENSVPAG00000010492	-	79	85.993	Vicugna_pacos
ENSCSEG00000000328	smarca5	95	83.030	ENSVVUG00000008878	SMARCA1	99	84.503	Vulpes_vulpes
ENSCSEG00000000328	smarca5	95	83.723	ENSXETG00000001526	smarca1	96	85.414	Xenopus_tropicalis
ENSCSEG00000000328	smarca5	97	96.825	ENSXCOG00000011170	smarca5	100	96.825	Xiphophorus_couchianus
ENSCSEG00000000328	smarca5	100	96.425	ENSXMAG00000009678	smarca5	100	96.425	Xiphophorus_maculatus