EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000000530 (Gene tree)
Gene ID: 103398583
Gene Symbol: rtca
Alias: cb158|rtcd1|sb:cb158|wu:fc62c03
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 5293 bases
Position: chr2:10640953-10646245
Accession: 103398583
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000000756	RTC	PF01137.21	4.4e-86	1	1
ENSCSEP00000000745	RTC	PF01137.21	1.4e-54	1	1
ENSCSEP00000000756	RTC_insert	PF05189.13	2.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000000773	-	558	-	ENSCSEP00000000745	185 (aa)	-	-
ENSCSET00000000784	-	1107	XM_008337248	ENSCSEP00000000756	368 (aa)	XP_008335470	UPI0004955A49

Gene Model

Click here to download ENSCSEG00000000530's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000000530's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000000530	rtca	98	68.493	ENSG00000137996	RTCA	99	68.493	Homo_sapiens
ENSCSEG00000000530	rtca	97	86.111	ENSAPOG00000001345	rtca	98	86.111	Acanthochromis_polyacanthus
ENSCSEG00000000530	rtca	71	71.004	ENSAMEG00000008855	RTCA	100	71.004	Ailuropoda_melanoleuca
ENSCSEG00000000530	rtca	96	85.196	ENSACIG00000019643	rtca	98	85.196	Amphilophus_citrinellus
ENSCSEG00000000530	rtca	96	85.754	ENSAOCG00000014979	rtca	98	85.754	Amphiprion_ocellaris
ENSCSEG00000000530	rtca	96	85.754	ENSAPEG00000006945	rtca	98	85.754	Amphiprion_percula
ENSCSEG00000000530	rtca	94	84.814	ENSATEG00000006315	rtca	96	84.814	Anabas_testudineus
ENSCSEG00000000530	rtca	94	64.873	ENSAPLG00000015430	RTCA	100	64.873	Anas_platyrhynchos
ENSCSEG00000000530	rtca	83	63.636	ENSACAG00000003290	RTCA	91	65.839	Anolis_carolinensis
ENSCSEG00000000530	rtca	96	69.444	ENSANAG00000025446	RTCA	98	69.444	Aotus_nancymaae
ENSCSEG00000000530	rtca	96	84.637	ENSACLG00000020770	rtca	98	84.637	Astatotilapia_calliptera
ENSCSEG00000000530	rtca	98	75.758	ENSAMXG00000043271	rtca	99	75.758	Astyanax_mexicanus
ENSCSEG00000000530	rtca	98	69.315	ENSBTAG00000006321	RTCA	99	69.315	Bos_taurus
ENSCSEG00000000530	rtca	98	68.767	ENSCJAG00000003398	RTCA	99	68.767	Callithrix_jacchus
ENSCSEG00000000530	rtca	96	69.722	ENSCAFG00000020010	RTCA	67	69.722	Canis_familiaris
ENSCSEG00000000530	rtca	96	69.722	ENSCAFG00020011528	RTCA	56	69.722	Canis_lupus_dingo
ENSCSEG00000000530	rtca	98	69.315	ENSCHIG00000018937	RTCA	99	69.315	Capra_hircus
ENSCSEG00000000530	rtca	96	69.722	ENSTSYG00000011305	RTCA	98	69.722	Carlito_syrichta
ENSCSEG00000000530	rtca	75	63.043	ENSCPOG00000009296	-	99	63.043	Cavia_porcellus
ENSCSEG00000000530	rtca	98	68.219	ENSCCAG00000021844	RTCA	99	69.880	Cebus_capucinus
ENSCSEG00000000530	rtca	98	66.402	ENSCATG00000019364	RTCA	100	68.932	Cercocebus_atys
ENSCSEG00000000530	rtca	85	69.620	ENSCLAG00000006125	RTCA	100	69.620	Chinchilla_lanigera
ENSCSEG00000000530	rtca	98	68.767	ENSCSAG00000001509	RTCA	99	68.767	Chlorocebus_sabaeus
ENSCSEG00000000530	rtca	95	69.188	ENSCHOG00000005211	RTCA	98	69.188	Choloepus_hoffmanni
ENSCSEG00000000530	rtca	96	66.852	ENSCPBG00000026658	RTCA	98	66.852	Chrysemys_picta_bellii
ENSCSEG00000000530	rtca	98	54.420	ENSCING00000007875	-	99	54.420	Ciona_intestinalis
ENSCSEG00000000530	rtca	98	54.144	ENSCSAVG00000007269	-	99	54.144	Ciona_savignyi
ENSCSEG00000000530	rtca	98	69.041	ENSCANG00000040106	RTCA	99	69.041	Colobus_angolensis_palliatus
ENSCSEG00000000530	rtca	71	69.517	ENSCGRG00001013163	Rtca	85	69.517	Cricetulus_griseus_chok1gshd
ENSCSEG00000000530	rtca	51	65.263	ENSCGRG00001001848	-	79	65.263	Cricetulus_griseus_chok1gshd
ENSCSEG00000000530	rtca	50	65.591	ENSCGRG00000002803	-	72	65.591	Cricetulus_griseus_crigri
ENSCSEG00000000530	rtca	96	69.863	ENSCVAG00000021809	rtca	98	69.863	Cyprinodon_variegatus
ENSCSEG00000000530	rtca	55	73.529	ENSCVAG00000008661	-	99	73.529	Cyprinodon_variegatus
ENSCSEG00000000530	rtca	98	75.414	ENSDARG00000002215	rtca	99	75.414	Danio_rerio
ENSCSEG00000000530	rtca	97	69.613	ENSDNOG00000000456	RTCA	99	69.613	Dasypus_novemcinctus
ENSCSEG00000000530	rtca	96	69.722	ENSDORG00000005448	Rtca	98	69.722	Dipodomys_ordii
ENSCSEG00000000530	rtca	97	39.554	FBgn0025630	Rtca	99	39.554	Drosophila_melanogaster
ENSCSEG00000000530	rtca	83	61.538	ENSEBUG00000008556	rtca	94	51.170	Eptatretus_burgeri
ENSCSEG00000000530	rtca	98	69.589	ENSEASG00005015926	RTCA	99	69.589	Equus_asinus_asinus
ENSCSEG00000000530	rtca	98	69.589	ENSECAG00000019831	RTCA	99	69.589	Equus_caballus
ENSCSEG00000000530	rtca	89	62.941	ENSEEUG00000001165	RTCA	98	62.941	Erinaceus_europaeus
ENSCSEG00000000530	rtca	97	73.757	ENSELUG00000003741	rtca	99	73.757	Esox_lucius
ENSCSEG00000000530	rtca	96	69.722	ENSFCAG00000024460	RTCA	98	69.722	Felis_catus
ENSCSEG00000000530	rtca	89	67.584	ENSFALG00000002443	RTCA	88	67.584	Ficedula_albicollis
ENSCSEG00000000530	rtca	98	67.671	ENSFDAG00000012070	-	99	67.671	Fukomys_damarensis
ENSCSEG00000000530	rtca	95	55.432	ENSFDAG00000016084	-	99	55.432	Fukomys_damarensis
ENSCSEG00000000530	rtca	67	74.797	ENSFHEG00000002868	rtca	90	84.211	Fundulus_heteroclitus
ENSCSEG00000000530	rtca	58	82.243	ENSFHEG00000017661	-	73	82.243	Fundulus_heteroclitus
ENSCSEG00000000530	rtca	96	76.257	ENSGMOG00000013264	rtca	98	76.257	Gadus_morhua
ENSCSEG00000000530	rtca	96	65.738	ENSGALG00000005277	RTCA	98	65.738	Gallus_gallus
ENSCSEG00000000530	rtca	96	84.637	ENSGAFG00000011853	rtca	98	84.637	Gambusia_affinis
ENSCSEG00000000530	rtca	96	80.447	ENSGACG00000013497	rtca	98	80.447	Gasterosteus_aculeatus
ENSCSEG00000000530	rtca	83	66.234	ENSGAGG00000023306	RTCA	98	66.899	Gopherus_agassizii
ENSCSEG00000000530	rtca	98	68.493	ENSGGOG00000009546	-	100	68.608	Gorilla_gorilla
ENSCSEG00000000530	rtca	98	68.219	ENSGGOG00000044018	-	99	68.219	Gorilla_gorilla
ENSCSEG00000000530	rtca	96	84.358	ENSHBUG00000002114	rtca	98	84.358	Haplochromis_burtoni
ENSCSEG00000000530	rtca	98	67.397	ENSHGLG00000002617	RTCA	99	67.397	Heterocephalus_glaber_female
ENSCSEG00000000530	rtca	98	67.397	ENSHGLG00100006056	RTCA	99	67.397	Heterocephalus_glaber_male
ENSCSEG00000000530	rtca	97	72.778	ENSHCOG00000020628	rtca	89	72.778	Hippocampus_comes
ENSCSEG00000000530	rtca	98	75.207	ENSIPUG00000024803	rtca	99	75.207	Ictalurus_punctatus
ENSCSEG00000000530	rtca	96	60.833	ENSSTOG00000033099	-	98	60.833	Ictidomys_tridecemlineatus
ENSCSEG00000000530	rtca	96	64.167	ENSSTOG00000013528	-	93	69.497	Ictidomys_tridecemlineatus
ENSCSEG00000000530	rtca	98	50.275	ENSJJAG00000016178	Rtca	99	50.275	Jaculus_jaculus
ENSCSEG00000000530	rtca	96	85.475	ENSKMAG00000006651	rtca	98	85.475	Kryptolebias_marmoratus
ENSCSEG00000000530	rtca	86	81.818	ENSLBEG00000002448	-	99	81.818	Labrus_bergylta
ENSCSEG00000000530	rtca	96	83.240	ENSLBEG00000028971	rtca	99	83.240	Labrus_bergylta
ENSCSEG00000000530	rtca	96	66.852	ENSLACG00000013666	RTCA	98	66.852	Latimeria_chalumnae
ENSCSEG00000000530	rtca	98	71.978	ENSLOCG00000000093	rtca	99	71.978	Lepisosteus_oculatus
ENSCSEG00000000530	rtca	96	68.333	ENSLAFG00000001473	RTCA	98	68.333	Loxodonta_africana
ENSCSEG00000000530	rtca	98	68.767	ENSMFAG00000034132	RTCA	99	68.767	Macaca_fascicularis
ENSCSEG00000000530	rtca	98	68.767	ENSMMUG00000019105	RTCA	99	68.767	Macaca_mulatta
ENSCSEG00000000530	rtca	82	68.932	ENSMNEG00000037163	RTCA	100	68.932	Macaca_nemestrina
ENSCSEG00000000530	rtca	98	55.890	ENSMLEG00000042151	RTCA	99	55.890	Mandrillus_leucophaeus
ENSCSEG00000000530	rtca	96	86.592	ENSMAMG00000016536	rtca	98	86.592	Mastacembelus_armatus
ENSCSEG00000000530	rtca	96	84.637	ENSMZEG00005017945	rtca	98	84.637	Maylandia_zebra
ENSCSEG00000000530	rtca	85	66.038	ENSMGAG00000006892	RTCA	99	66.038	Meleagris_gallopavo
ENSCSEG00000000530	rtca	96	69.444	ENSMAUG00000008488	Rtca	98	69.444	Mesocricetus_auratus
ENSCSEG00000000530	rtca	82	70.227	ENSMICG00000008643	RTCA	100	70.227	Microcebus_murinus
ENSCSEG00000000530	rtca	96	69.722	ENSMOCG00000016660	Rtca	98	69.722	Microtus_ochrogaster
ENSCSEG00000000530	rtca	82	84.039	ENSMMOG00000007750	rtca	100	84.039	Mola_mola
ENSCSEG00000000530	rtca	96	68.889	ENSMODG00000003557	RTCA	98	68.889	Monodelphis_domestica
ENSCSEG00000000530	rtca	96	86.034	ENSMALG00000020844	rtca	98	86.034	Monopterus_albus
ENSCSEG00000000530	rtca	96	68.611	MGP_CAROLIEiJ_G0025565	Rtca	100	68.310	Mus_caroli
ENSCSEG00000000530	rtca	96	68.333	ENSMUSG00000000339	Rtca	100	68.310	Mus_musculus
ENSCSEG00000000530	rtca	96	68.611	MGP_PahariEiJ_G0027011	Rtca	100	68.310	Mus_pahari
ENSCSEG00000000530	rtca	96	68.611	MGP_SPRETEiJ_G0026515	Rtca	100	68.310	Mus_spretus
ENSCSEG00000000530	rtca	98	69.315	ENSMPUG00000012119	RTCA	99	69.315	Mustela_putorius_furo
ENSCSEG00000000530	rtca	98	66.393	ENSMLUG00000009922	RTCA	99	66.393	Myotis_lucifugus
ENSCSEG00000000530	rtca	96	68.889	ENSNGAG00000011540	Rtca	98	68.889	Nannospalax_galili
ENSCSEG00000000530	rtca	96	84.358	ENSNBRG00000003062	rtca	98	84.358	Neolamprologus_brichardi
ENSCSEG00000000530	rtca	98	68.767	ENSNLEG00000031426	RTCA	99	68.767	Nomascus_leucogenys
ENSCSEG00000000530	rtca	71	66.914	ENSOPRG00000012092	RTCA	71	66.914	Ochotona_princeps
ENSCSEG00000000530	rtca	93	68.391	ENSODEG00000006990	RTCA	96	68.661	Octodon_degus
ENSCSEG00000000530	rtca	96	84.358	ENSONIG00000007753	rtca	98	84.358	Oreochromis_niloticus
ENSCSEG00000000530	rtca	85	67.823	ENSOANG00000012055	RTCA	98	67.823	Ornithorhynchus_anatinus
ENSCSEG00000000530	rtca	96	69.444	ENSOCUG00000014247	RTCA	98	69.444	Oryctolagus_cuniculus
ENSCSEG00000000530	rtca	96	84.637	ENSORLG00000013605	rtca	98	84.637	Oryzias_latipes
ENSCSEG00000000530	rtca	96	84.916	ENSORLG00020001904	rtca	98	84.916	Oryzias_latipes_hni
ENSCSEG00000000530	rtca	96	84.916	ENSORLG00015021064	rtca	98	84.916	Oryzias_latipes_hsok
ENSCSEG00000000530	rtca	96	84.078	ENSOMEG00000000756	rtca	98	84.078	Oryzias_melastigma
ENSCSEG00000000530	rtca	98	63.562	ENSOGAG00000005627	RTCA	99	63.562	Otolemur_garnettii
ENSCSEG00000000530	rtca	85	69.811	ENSOARG00000018122	RTCA	100	69.811	Ovis_aries
ENSCSEG00000000530	rtca	98	66.402	ENSPPAG00000035119	RTCA	100	68.932	Pan_paniscus
ENSCSEG00000000530	rtca	96	69.722	ENSPPRG00000000350	RTCA	98	69.722	Panthera_pardus
ENSCSEG00000000530	rtca	96	69.444	ENSPTIG00000012816	RTCA	98	69.444	Panthera_tigris_altaica
ENSCSEG00000000530	rtca	98	66.138	ENSPTRG00000001004	RTCA	100	68.608	Pan_troglodytes
ENSCSEG00000000530	rtca	96	69.167	ENSPANG00000000346	RTCA	98	69.167	Papio_anubis
ENSCSEG00000000530	rtca	98	76.309	ENSPKIG00000001653	rtca	99	76.309	Paramormyrops_kingsleyae
ENSCSEG00000000530	rtca	96	66.017	ENSPSIG00000011408	RTCA	98	66.017	Pelodiscus_sinensis
ENSCSEG00000000530	rtca	80	70.779	ENSPMGG00000022529	rtca	98	70.779	Periophthalmus_magnuspinnatus
ENSCSEG00000000530	rtca	96	69.444	ENSPEMG00000018582	Rtca	98	69.444	Peromyscus_maniculatus_bairdii
ENSCSEG00000000530	rtca	96	54.167	ENSPMAG00000009110	rtca	98	54.167	Petromyzon_marinus
ENSCSEG00000000530	rtca	96	69.444	ENSPCIG00000007684	RTCA	98	69.444	Phascolarctos_cinereus
ENSCSEG00000000530	rtca	96	85.515	ENSPFOG00000004824	rtca	98	85.515	Poecilia_formosa
ENSCSEG00000000530	rtca	96	85.754	ENSPLAG00000011753	rtca	98	85.754	Poecilia_latipinna
ENSCSEG00000000530	rtca	96	85.754	ENSPMEG00000020469	rtca	98	85.754	Poecilia_mexicana
ENSCSEG00000000530	rtca	96	85.475	ENSPREG00000001365	rtca	98	85.475	Poecilia_reticulata
ENSCSEG00000000530	rtca	52	64.583	ENSPPYG00000029514	-	95	64.583	Pongo_abelii
ENSCSEG00000000530	rtca	98	69.041	ENSPPYG00000001115	RTCA	99	69.041	Pongo_abelii
ENSCSEG00000000530	rtca	98	65.395	ENSPCAG00000005076	RTCA	100	65.395	Procavia_capensis
ENSCSEG00000000530	rtca	96	70.000	ENSPCOG00000005603	RTCA	98	70.000	Propithecus_coquereli
ENSCSEG00000000530	rtca	96	66.488	ENSPVAG00000009478	RTCA	98	66.488	Pteropus_vampyrus
ENSCSEG00000000530	rtca	96	84.637	ENSPNYG00000004722	rtca	98	84.637	Pundamilia_nyererei
ENSCSEG00000000530	rtca	98	76.309	ENSPNAG00000022270	rtca	99	76.309	Pygocentrus_nattereri
ENSCSEG00000000530	rtca	96	68.056	ENSRNOG00000014575	Rtca	98	68.056	Rattus_norvegicus
ENSCSEG00000000530	rtca	98	66.402	ENSRBIG00000041180	RTCA	100	68.932	Rhinopithecus_bieti
ENSCSEG00000000530	rtca	98	68.767	ENSRROG00000024929	RTCA	99	68.767	Rhinopithecus_roxellana
ENSCSEG00000000530	rtca	98	68.219	ENSSBOG00000028626	RTCA	99	68.219	Saimiri_boliviensis_boliviensis
ENSCSEG00000000530	rtca	96	69.167	ENSSHAG00000001758	RTCA	98	69.167	Sarcophilus_harrisii
ENSCSEG00000000530	rtca	100	80.914	ENSSMAG00000014680	rtca	100	80.914	Scophthalmus_maximus
ENSCSEG00000000530	rtca	96	86.072	ENSSDUG00000015585	rtca	100	84.409	Seriola_dumerili
ENSCSEG00000000530	rtca	94	86.246	ENSSLDG00000018985	rtca	95	86.246	Seriola_lalandi_dorsalis
ENSCSEG00000000530	rtca	85	65.300	ENSSARG00000013993	RTCA	100	65.300	Sorex_araneus
ENSCSEG00000000530	rtca	72	66.165	ENSSPUG00000016262	-	84	66.165	Sphenodon_punctatus
ENSCSEG00000000530	rtca	96	84.358	ENSSPAG00000011938	rtca	98	84.358	Stegastes_partitus
ENSCSEG00000000530	rtca	98	69.315	ENSSSCG00000006865	RTCA	99	69.315	Sus_scrofa
ENSCSEG00000000530	rtca	96	66.295	ENSTGUG00000005154	RTCA	98	66.295	Taeniopygia_guttata
ENSCSEG00000000530	rtca	80	78.523	ENSTRUG00000002431	-	96	78.523	Takifugu_rubripes
ENSCSEG00000000530	rtca	96	82.402	ENSTRUG00000008799	rtca	98	82.402	Takifugu_rubripes
ENSCSEG00000000530	rtca	96	81.844	ENSTNIG00000004725	rtca	98	81.844	Tetraodon_nigroviridis
ENSCSEG00000000530	rtca	56	54.808	ENSTBEG00000000943	RTCA	80	49.580	Tupaia_belangeri
ENSCSEG00000000530	rtca	98	66.667	ENSTTRG00000015327	RTCA	99	66.667	Tursiops_truncatus
ENSCSEG00000000530	rtca	91	69.436	ENSUAMG00000017265	RTCA	95	69.436	Ursus_americanus
ENSCSEG00000000530	rtca	96	69.444	ENSUMAG00000007881	RTCA	98	69.444	Ursus_maritimus
ENSCSEG00000000530	rtca	85	61.830	ENSVPAG00000001039	RTCA	84	61.830	Vicugna_pacos
ENSCSEG00000000530	rtca	96	69.722	ENSVVUG00000022041	RTCA	66	69.722	Vulpes_vulpes
ENSCSEG00000000530	rtca	95	58.380	ENSXETG00000031661	RTCA	98	58.380	Xenopus_tropicalis
ENSCSEG00000000530	rtca	96	72.905	ENSXCOG00000008002	rtca	98	72.905	Xiphophorus_couchianus
ENSCSEG00000000530	rtca	96	84.637	ENSXMAG00000005482	rtca	98	84.637	Xiphophorus_maculatus