EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000000712 (Gene tree)
Gene ID: 103389214
Gene Symbol: rcl1
Alias: zgc:109921
Full Name: RNA terminal phosphate cyclase like 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 13538 bases
Position: chr14:4058936-4072473
Accession: 103389214
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000001016	RTC	PF01137.21	1.2e-58	1	1
ENSCSEP00000001021	RTC	PF01137.21	1.7e-58	1	1
ENSCSEP00000001030	RTC	PF01137.21	9.7e-49	1	1
ENSCSEP00000001030	RTC_insert	PF05189.13	1.1e-33	1	1
ENSCSEP00000001016	RTC_insert	PF05189.13	1.4e-33	1	1
ENSCSEP00000001021	RTC_insert	PF05189.13	1.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000001058	-	1071	XM_017038437	ENSCSEP00000001030	356 (aa)	XP_016893926	-
ENSCSET00000001048	-	1918	XM_008324534	ENSCSEP00000001021	426 (aa)	XP_008322756	-
ENSCSET00000001044	-	1669	-	ENSCSEP00000001016	380 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000000712's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000000712's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000000712	rcl1	97	79.459	ENSG00000120158	RCL1	100	81.944	Homo_sapiens
ENSCSEG00000000712	rcl1	98	88.710	ENSAPOG00000015666	rcl1	100	88.710	Acanthochromis_polyacanthus
ENSCSEG00000000712	rcl1	97	79.459	ENSAMEG00000002631	RCL1	99	79.459	Ailuropoda_melanoleuca
ENSCSEG00000000712	rcl1	98	88.172	ENSACIG00000021195	rcl1	100	88.172	Amphilophus_citrinellus
ENSCSEG00000000712	rcl1	98	88.710	ENSAOCG00000002223	rcl1	100	88.710	Amphiprion_ocellaris
ENSCSEG00000000712	rcl1	98	89.247	ENSAPEG00000006905	rcl1	100	89.247	Amphiprion_percula
ENSCSEG00000000712	rcl1	98	85.484	ENSATEG00000020026	rcl1	100	85.484	Anabas_testudineus
ENSCSEG00000000712	rcl1	87	75.988	ENSAPLG00000006031	RCL1	100	75.988	Anas_platyrhynchos
ENSCSEG00000000712	rcl1	97	73.514	ENSACAG00000003640	RCL1	99	73.514	Anolis_carolinensis
ENSCSEG00000000712	rcl1	97	78.919	ENSANAG00000037372	RCL1	99	78.919	Aotus_nancymaae
ENSCSEG00000000712	rcl1	98	88.441	ENSACLG00000021724	rcl1	100	88.441	Astatotilapia_calliptera
ENSCSEG00000000712	rcl1	97	83.967	ENSAMXG00000033394	rcl1	99	83.967	Astyanax_mexicanus
ENSCSEG00000000712	rcl1	98	45.767	WBGene00022852	ZK1127.5	99	45.767	Caenorhabditis_elegans
ENSCSEG00000000712	rcl1	97	79.189	ENSCJAG00000011202	RCL1	99	79.189	Callithrix_jacchus
ENSCSEG00000000712	rcl1	97	78.919	ENSCAFG00000002091	RCL1	99	78.919	Canis_familiaris
ENSCSEG00000000712	rcl1	97	78.919	ENSCAFG00020000638	RCL1	77	78.919	Canis_lupus_dingo
ENSCSEG00000000712	rcl1	97	78.919	ENSCHIG00000012407	RCL1	99	78.919	Capra_hircus
ENSCSEG00000000712	rcl1	86	80.183	ENSTSYG00000009592	RCL1	97	81.319	Carlito_syrichta
ENSCSEG00000000712	rcl1	67	68.208	ENSCAPG00000013575	RCL1	100	68.208	Cavia_aperea
ENSCSEG00000000712	rcl1	97	79.189	ENSCPOG00000015354	RCL1	99	79.189	Cavia_porcellus
ENSCSEG00000000712	rcl1	97	79.189	ENSCCAG00000033505	RCL1	97	81.421	Cebus_capucinus
ENSCSEG00000000712	rcl1	97	79.189	ENSCATG00000034721	RCL1	97	81.868	Cercocebus_atys
ENSCSEG00000000712	rcl1	97	79.189	ENSCLAG00000007445	RCL1	99	79.189	Chinchilla_lanigera
ENSCSEG00000000712	rcl1	97	79.189	ENSCSAG00000008811	RCL1	99	79.189	Chlorocebus_sabaeus
ENSCSEG00000000712	rcl1	84	68.025	ENSCHOG00000007216	RCL1	99	68.025	Choloepus_hoffmanni
ENSCSEG00000000712	rcl1	98	76.738	ENSCPBG00000025481	RCL1	94	76.970	Chrysemys_picta_bellii
ENSCSEG00000000712	rcl1	97	59.189	ENSCING00000019565	-	98	59.189	Ciona_intestinalis
ENSCSEG00000000712	rcl1	97	79.189	ENSCANG00000027099	RCL1	99	79.189	Colobus_angolensis_palliatus
ENSCSEG00000000712	rcl1	97	78.919	ENSCGRG00001013748	Rcl1	99	78.919	Cricetulus_griseus_chok1gshd
ENSCSEG00000000712	rcl1	87	79.939	ENSCGRG00000005843	Rcl1	99	79.939	Cricetulus_griseus_crigri
ENSCSEG00000000712	rcl1	98	88.978	ENSCVAG00000011536	rcl1	100	88.978	Cyprinodon_variegatus
ENSCSEG00000000712	rcl1	97	80.926	ENSDARG00000038312	rcl1	100	80.926	Danio_rerio
ENSCSEG00000000712	rcl1	75	79.699	ENSDNOG00000019911	RCL1	100	81.019	Dasypus_novemcinctus
ENSCSEG00000000712	rcl1	97	79.189	ENSDORG00000015645	Rcl1	99	79.189	Dipodomys_ordii
ENSCSEG00000000712	rcl1	96	53.100	FBgn0020909	Rtc1	97	53.908	Drosophila_melanogaster
ENSCSEG00000000712	rcl1	69	65.041	ENSETEG00000014087	-	100	54.573	Echinops_telfairi
ENSCSEG00000000712	rcl1	98	56.032	ENSEBUG00000016621	-	99	56.032	Eptatretus_burgeri
ENSCSEG00000000712	rcl1	97	78.919	ENSEASG00005010653	RCL1	99	78.919	Equus_asinus_asinus
ENSCSEG00000000712	rcl1	97	78.919	ENSECAG00000015973	RCL1	99	78.919	Equus_caballus
ENSCSEG00000000712	rcl1	99	67.838	ENSEEUG00000009801	RCL1	99	67.838	Erinaceus_europaeus
ENSCSEG00000000712	rcl1	98	79.839	ENSELUG00000007353	rcl1	100	79.839	Esox_lucius
ENSCSEG00000000712	rcl1	97	78.649	ENSFCAG00000014557	RCL1	99	78.649	Felis_catus
ENSCSEG00000000712	rcl1	98	70.509	ENSFALG00000010553	RCL1	99	70.133	Ficedula_albicollis
ENSCSEG00000000712	rcl1	86	79.268	ENSFDAG00000004209	RCL1	100	79.268	Fukomys_damarensis
ENSCSEG00000000712	rcl1	99	88.889	ENSFHEG00000011228	rcl1	100	88.978	Fundulus_heteroclitus
ENSCSEG00000000712	rcl1	98	83.333	ENSGMOG00000004677	rcl1	100	83.333	Gadus_morhua
ENSCSEG00000000712	rcl1	98	74.933	ENSGALG00000015024	RCL1	99	74.933	Gallus_gallus
ENSCSEG00000000712	rcl1	98	88.710	ENSGAFG00000007257	rcl1	100	88.710	Gambusia_affinis
ENSCSEG00000000712	rcl1	98	86.828	ENSGACG00000017474	rcl1	100	86.828	Gasterosteus_aculeatus
ENSCSEG00000000712	rcl1	98	77.005	ENSGAGG00000003689	RCL1	100	77.005	Gopherus_agassizii
ENSCSEG00000000712	rcl1	97	78.919	ENSGGOG00000015041	RCL1	97	81.319	Gorilla_gorilla
ENSCSEG00000000712	rcl1	98	88.978	ENSHBUG00000001393	rcl1	100	88.978	Haplochromis_burtoni
ENSCSEG00000000712	rcl1	97	66.938	ENSHGLG00000005368	-	99	66.938	Heterocephalus_glaber_female
ENSCSEG00000000712	rcl1	97	78.378	ENSHGLG00000016452	RCL1	99	78.378	Heterocephalus_glaber_female
ENSCSEG00000000712	rcl1	97	73.243	ENSHGLG00100008718	-	99	73.243	Heterocephalus_glaber_male
ENSCSEG00000000712	rcl1	97	67.751	ENSHGLG00100018010	-	99	67.751	Heterocephalus_glaber_male
ENSCSEG00000000712	rcl1	98	88.172	ENSHCOG00000020170	rcl1	100	88.172	Hippocampus_comes
ENSCSEG00000000712	rcl1	98	83.871	ENSIPUG00000018054	RCL1	100	83.871	Ictalurus_punctatus
ENSCSEG00000000712	rcl1	97	78.919	ENSSTOG00000000023	RCL1	99	78.919	Ictidomys_tridecemlineatus
ENSCSEG00000000712	rcl1	97	78.919	ENSJJAG00000022803	-	99	78.919	Jaculus_jaculus
ENSCSEG00000000712	rcl1	57	61.386	ENSJJAG00000000764	-	98	61.386	Jaculus_jaculus
ENSCSEG00000000712	rcl1	99	68.120	ENSJJAG00000015632	-	99	69.730	Jaculus_jaculus
ENSCSEG00000000712	rcl1	98	87.097	ENSKMAG00000011946	rcl1	100	87.097	Kryptolebias_marmoratus
ENSCSEG00000000712	rcl1	100	81.793	ENSLBEG00000003957	rcl1	100	82.796	Labrus_bergylta
ENSCSEG00000000712	rcl1	91	73.199	ENSLACG00000004594	RCL1	100	77.329	Latimeria_chalumnae
ENSCSEG00000000712	rcl1	99	82.447	ENSLOCG00000010148	rcl1	99	82.447	Lepisosteus_oculatus
ENSCSEG00000000712	rcl1	97	77.568	ENSLAFG00000017495	RCL1	99	77.568	Loxodonta_africana
ENSCSEG00000000712	rcl1	97	79.189	ENSMFAG00000037906	RCL1	99	79.189	Macaca_fascicularis
ENSCSEG00000000712	rcl1	97	79.189	ENSMNEG00000012288	RCL1	97	81.868	Macaca_nemestrina
ENSCSEG00000000712	rcl1	97	79.189	ENSMLEG00000043088	RCL1	99	79.189	Mandrillus_leucophaeus
ENSCSEG00000000712	rcl1	98	88.441	ENSMAMG00000008311	rcl1	100	88.441	Mastacembelus_armatus
ENSCSEG00000000712	rcl1	98	88.441	ENSMZEG00005017292	rcl1	100	88.441	Maylandia_zebra
ENSCSEG00000000712	rcl1	61	72.273	ENSMGAG00000002245	RCL1	100	72.273	Meleagris_gallopavo
ENSCSEG00000000712	rcl1	61	80.556	ENSMAUG00000008922	Rcl1	100	80.556	Mesocricetus_auratus
ENSCSEG00000000712	rcl1	97	78.862	ENSMICG00000015562	RCL1	99	78.862	Microcebus_murinus
ENSCSEG00000000712	rcl1	97	79.189	ENSMOCG00000012145	Rcl1	99	79.189	Microtus_ochrogaster
ENSCSEG00000000712	rcl1	98	84.718	ENSMMOG00000021264	rcl1	100	84.718	Mola_mola
ENSCSEG00000000712	rcl1	93	77.841	ENSMODG00000015377	RCL1	93	77.841	Monodelphis_domestica
ENSCSEG00000000712	rcl1	98	86.290	ENSMALG00000018618	rcl1	100	86.290	Monopterus_albus
ENSCSEG00000000712	rcl1	97	79.189	MGP_CAROLIEiJ_G0022853	Rcl1	99	79.189	Mus_caroli
ENSCSEG00000000712	rcl1	97	78.649	ENSMUSG00000024785	Rcl1	99	78.649	Mus_musculus
ENSCSEG00000000712	rcl1	97	79.459	MGP_PahariEiJ_G0014346	Rcl1	100	80.702	Mus_pahari
ENSCSEG00000000712	rcl1	97	78.649	MGP_SPRETEiJ_G0023771	Rcl1	100	80.117	Mus_spretus
ENSCSEG00000000712	rcl1	97	78.649	ENSMPUG00000004998	RCL1	99	78.649	Mustela_putorius_furo
ENSCSEG00000000712	rcl1	97	77.568	ENSMLUG00000009654	RCL1	99	77.568	Myotis_lucifugus
ENSCSEG00000000712	rcl1	97	79.189	ENSNGAG00000015327	Rcl1	99	79.189	Nannospalax_galili
ENSCSEG00000000712	rcl1	90	85.131	ENSNBRG00000019854	rcl1	99	81.768	Neolamprologus_brichardi
ENSCSEG00000000712	rcl1	97	76.757	ENSNLEG00000008891	RCL1	99	76.757	Nomascus_leucogenys
ENSCSEG00000000712	rcl1	99	72.162	ENSMEUG00000007653	RCL1	99	72.162	Notamacropus_eugenii
ENSCSEG00000000712	rcl1	97	77.838	ENSOPRG00000010965	RCL1	99	77.838	Ochotona_princeps
ENSCSEG00000000712	rcl1	87	67.173	ENSODEG00000004151	RCL1	96	67.173	Octodon_degus
ENSCSEG00000000712	rcl1	98	88.978	ENSONIG00000003871	rcl1	100	88.978	Oreochromis_niloticus
ENSCSEG00000000712	rcl1	69	75.904	ENSOANG00000013193	-	98	75.904	Ornithorhynchus_anatinus
ENSCSEG00000000712	rcl1	97	78.919	ENSOCUG00000008161	RCL1	99	78.919	Oryctolagus_cuniculus
ENSCSEG00000000712	rcl1	98	86.559	ENSORLG00000010443	rcl1	100	86.559	Oryzias_latipes
ENSCSEG00000000712	rcl1	98	86.828	ENSORLG00020012211	rcl1	100	86.828	Oryzias_latipes_hni
ENSCSEG00000000712	rcl1	98	86.290	ENSORLG00015001122	rcl1	100	86.290	Oryzias_latipes_hsok
ENSCSEG00000000712	rcl1	100	86.236	ENSOMEG00000022976	rcl1	90	86.911	Oryzias_melastigma
ENSCSEG00000000712	rcl1	97	77.838	ENSOGAG00000007480	RCL1	99	77.838	Otolemur_garnettii
ENSCSEG00000000712	rcl1	97	78.919	ENSOARG00000013463	RCL1	99	78.919	Ovis_aries
ENSCSEG00000000712	rcl1	97	79.730	ENSPPAG00000037958	RCL1	99	79.730	Pan_paniscus
ENSCSEG00000000712	rcl1	97	78.108	ENSPPRG00000022645	RCL1	99	78.108	Panthera_pardus
ENSCSEG00000000712	rcl1	86	79.205	ENSPTIG00000019031	RCL1	100	79.630	Panthera_tigris_altaica
ENSCSEG00000000712	rcl1	97	79.459	ENSPTRG00000020743	RCL1	97	81.868	Pan_troglodytes
ENSCSEG00000000712	rcl1	97	79.189	ENSPANG00000025151	RCL1	99	79.189	Papio_anubis
ENSCSEG00000000712	rcl1	98	79.839	ENSPKIG00000021022	rcl1	100	79.839	Paramormyrops_kingsleyae
ENSCSEG00000000712	rcl1	87	77.204	ENSPSIG00000012302	RCL1	100	77.204	Pelodiscus_sinensis
ENSCSEG00000000712	rcl1	98	85.753	ENSPMGG00000024007	rcl1	100	85.753	Periophthalmus_magnuspinnatus
ENSCSEG00000000712	rcl1	97	79.459	ENSPEMG00000023275	Rcl1	99	79.459	Peromyscus_maniculatus_bairdii
ENSCSEG00000000712	rcl1	51	66.111	ENSPMAG00000005419	-	96	66.111	Petromyzon_marinus
ENSCSEG00000000712	rcl1	97	78.108	ENSPCIG00000000188	RCL1	99	78.108	Phascolarctos_cinereus
ENSCSEG00000000712	rcl1	99	89.067	ENSPFOG00000019682	rcl1	100	89.067	Poecilia_formosa
ENSCSEG00000000712	rcl1	98	88.978	ENSPLAG00000022354	rcl1	100	88.978	Poecilia_latipinna
ENSCSEG00000000712	rcl1	98	88.978	ENSPMEG00000008131	rcl1	100	88.978	Poecilia_mexicana
ENSCSEG00000000712	rcl1	98	88.710	ENSPREG00000008032	rcl1	100	88.710	Poecilia_reticulata
ENSCSEG00000000712	rcl1	97	79.189	ENSPPYG00000019244	RCL1	99	79.189	Pongo_abelii
ENSCSEG00000000712	rcl1	97	71.622	ENSPCAG00000001440	RCL1	99	71.622	Procavia_capensis
ENSCSEG00000000712	rcl1	97	79.459	ENSPCOG00000009611	RCL1	97	81.868	Propithecus_coquereli
ENSCSEG00000000712	rcl1	97	78.649	ENSPVAG00000015752	RCL1	99	78.649	Pteropus_vampyrus
ENSCSEG00000000712	rcl1	98	88.441	ENSPNYG00000012910	rcl1	100	88.441	Pundamilia_nyererei
ENSCSEG00000000712	rcl1	99	81.963	ENSPNAG00000028307	rcl1	92	81.963	Pygocentrus_nattereri
ENSCSEG00000000712	rcl1	97	78.649	ENSRNOG00000015491	Rcl1	99	78.649	Rattus_norvegicus
ENSCSEG00000000712	rcl1	97	78.919	ENSRBIG00000035818	RCL1	99	78.919	Rhinopithecus_bieti
ENSCSEG00000000712	rcl1	97	79.189	ENSRROG00000029781	RCL1	97	81.868	Rhinopithecus_roxellana
ENSCSEG00000000712	rcl1	96	38.378	YOL010W	-	97	38.378	Saccharomyces_cerevisiae
ENSCSEG00000000712	rcl1	97	79.459	ENSSBOG00000026369	RCL1	97	81.967	Saimiri_boliviensis_boliviensis
ENSCSEG00000000712	rcl1	87	78.248	ENSSHAG00000014086	RCL1	100	78.248	Sarcophilus_harrisii
ENSCSEG00000000712	rcl1	98	80.376	ENSSFOG00015023020	rcl1	100	80.376	Scleropages_formosus
ENSCSEG00000000712	rcl1	99	89.683	ENSSMAG00000019751	rcl1	88	89.556	Scophthalmus_maximus
ENSCSEG00000000712	rcl1	98	89.247	ENSSDUG00000006349	rcl1	100	89.247	Seriola_dumerili
ENSCSEG00000000712	rcl1	98	88.978	ENSSLDG00000022076	rcl1	100	88.978	Seriola_lalandi_dorsalis
ENSCSEG00000000712	rcl1	97	78.378	ENSSARG00000009260	RCL1	99	78.378	Sorex_araneus
ENSCSEG00000000712	rcl1	97	77.027	ENSSPUG00000016330	RCL1	99	77.027	Sphenodon_punctatus
ENSCSEG00000000712	rcl1	98	89.247	ENSSPAG00000018038	rcl1	100	89.247	Stegastes_partitus
ENSCSEG00000000712	rcl1	97	79.189	ENSSSCG00000005217	RCL1	82	79.189	Sus_scrofa
ENSCSEG00000000712	rcl1	97	74.731	ENSTGUG00000005138	RCL1	99	74.731	Taeniopygia_guttata
ENSCSEG00000000712	rcl1	98	86.559	ENSTRUG00000010493	rcl1	100	86.559	Takifugu_rubripes
ENSCSEG00000000712	rcl1	98	83.690	ENSTNIG00000013214	rcl1	100	83.690	Tetraodon_nigroviridis
ENSCSEG00000000712	rcl1	97	74.054	ENSTBEG00000016339	RCL1	99	74.054	Tupaia_belangeri
ENSCSEG00000000712	rcl1	97	79.189	ENSTTRG00000016525	RCL1	99	79.189	Tursiops_truncatus
ENSCSEG00000000712	rcl1	97	79.459	ENSUAMG00000005598	RCL1	99	79.459	Ursus_americanus
ENSCSEG00000000712	rcl1	86	79.878	ENSUMAG00000017890	RCL1	97	79.878	Ursus_maritimus
ENSCSEG00000000712	rcl1	86	80.183	ENSVPAG00000009188	RCL1	100	80.183	Vicugna_pacos
ENSCSEG00000000712	rcl1	87	80.243	ENSVVUG00000007304	RCL1	89	80.243	Vulpes_vulpes
ENSCSEG00000000712	rcl1	98	70.133	ENSXETG00000000592	rcl1	100	70.133	Xenopus_tropicalis
ENSCSEG00000000712	rcl1	98	89.247	ENSXCOG00000004922	rcl1	100	89.247	Xiphophorus_couchianus
ENSCSEG00000000712	rcl1	98	89.247	ENSXMAG00000022366	RCL1	100	89.247	Xiphophorus_maculatus