EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000000955 (Gene tree)
Gene ID: 103386604
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 14766 bases
Position: chr1:23926493-23941258
Accession: 103386604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	1	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	2	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	3	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	4	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	5	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	6	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	7	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	8	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	9	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	10	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	11	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	12	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	13	14
ENSCSEP00000001386	KH_1	PF00013.29	4.7e-186	14	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	1	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	2	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	3	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	4	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	5	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	6	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	7	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	8	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	9	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	10	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	11	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	12	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	13	14
ENSCSEP00000001402	KH_1	PF00013.29	9.4e-186	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000001431	-	6063	-	ENSCSEP00000001402	1162 (aa)	-	-
ENSCSET00000001415	-	5874	XM_008320958	ENSCSEP00000001386	1267 (aa)	XP_008319180	UPI000498609F

Gene Model

Click here to download ENSCSEG00000000955's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000000955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000000955	hdlbpb	100	71.318	ENSCSEG00000008853	hdlbpa	100	70.879

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000000955	hdlbpb	100	96.293	ENSAPOG00000006904	hdlbpb	100	96.293	Acanthochromis_polyacanthus
ENSCSEG00000000955	hdlbpb	100	90.964	ENSACIG00000016154	hdlbpb	100	90.416	Amphilophus_citrinellus
ENSCSEG00000000955	hdlbpb	100	96.688	ENSAOCG00000004083	hdlbpb	100	96.688	Amphiprion_ocellaris
ENSCSEG00000000955	hdlbpb	100	96.609	ENSAPEG00000012270	hdlbpb	100	96.609	Amphiprion_percula
ENSCSEG00000000955	hdlbpb	100	94.874	ENSATEG00000019877	hdlbpb	100	94.874	Anabas_testudineus
ENSCSEG00000000955	hdlbpb	100	81.768	ENSACAG00000003606	-	100	81.768	Anolis_carolinensis
ENSCSEG00000000955	hdlbpb	100	95.741	ENSACLG00000006618	hdlbpb	100	95.741	Astatotilapia_calliptera
ENSCSEG00000000955	hdlbpb	100	77.463	ENSAMXG00000019946	hdlbpb	100	77.463	Astyanax_mexicanus
ENSCSEG00000000955	hdlbpb	100	94.322	ENSCVAG00000005345	hdlbpb	100	94.322	Cyprinodon_variegatus
ENSCSEG00000000955	hdlbpb	99	84.360	ENSDARG00000061864	hdlbpb	99	84.281	Danio_rerio
ENSCSEG00000000955	hdlbpb	94	69.589	ENSEBUG00000005304	hdlbpb	96	69.316	Eptatretus_burgeri
ENSCSEG00000000955	hdlbpb	100	77.612	ENSELUG00000019925	hdlbpb	100	77.612	Esox_lucius
ENSCSEG00000000955	hdlbpb	87	34.122	ENSFHEG00000001701	hdlbpb	100	89.748	Fundulus_heteroclitus
ENSCSEG00000000955	hdlbpb	95	89.962	ENSGMOG00000004522	hdlbpb	78	87.362	Gadus_morhua
ENSCSEG00000000955	hdlbpb	100	94.716	ENSGAFG00000005278	hdlbpb	100	94.716	Gambusia_affinis
ENSCSEG00000000955	hdlbpb	99	93.540	ENSGACG00000019361	hdlbpb	100	92.022	Gasterosteus_aculeatus
ENSCSEG00000000955	hdlbpb	100	95.584	ENSHBUG00000018434	hdlbpb	100	95.584	Haplochromis_burtoni
ENSCSEG00000000955	hdlbpb	100	84.712	ENSIPUG00000003291	HDLBP	100	85.179	Ictalurus_punctatus
ENSCSEG00000000955	hdlbpb	100	95.357	ENSKMAG00000016562	hdlbpb	100	95.189	Kryptolebias_marmoratus
ENSCSEG00000000955	hdlbpb	100	94.953	ENSLBEG00000027855	hdlbpb	100	94.953	Labrus_bergylta
ENSCSEG00000000955	hdlbpb	100	84.375	ENSLACG00000007661	hdlbpb	100	84.247	Latimeria_chalumnae
ENSCSEG00000000955	hdlbpb	100	82.729	ENSLOCG00000013909	hdlbpb	100	82.729	Lepisosteus_oculatus
ENSCSEG00000000955	hdlbpb	100	95.426	ENSMAMG00000003035	hdlbpb	100	95.426	Mastacembelus_armatus
ENSCSEG00000000955	hdlbpb	100	95.741	ENSMZEG00005021465	hdlbpb	100	95.741	Maylandia_zebra
ENSCSEG00000000955	hdlbpb	100	93.844	ENSMMOG00000012525	hdlbpb	100	93.844	Mola_mola
ENSCSEG00000000955	hdlbpb	100	93.770	ENSMALG00000008938	hdlbpb	100	93.770	Monopterus_albus
ENSCSEG00000000955	hdlbpb	100	95.662	ENSNBRG00000002236	hdlbpb	100	95.662	Neolamprologus_brichardi
ENSCSEG00000000955	hdlbpb	100	95.584	ENSONIG00000009211	hdlbpb	100	95.505	Oreochromis_niloticus
ENSCSEG00000000955	hdlbpb	100	94.320	ENSORLG00000006581	hdlbpb	100	94.238	Oryzias_latipes
ENSCSEG00000000955	hdlbpb	100	94.492	ENSORLG00020010012	hdlbpb	100	94.396	Oryzias_latipes_hni
ENSCSEG00000000955	hdlbpb	100	94.750	ENSORLG00015006863	hdlbpb	100	94.633	Oryzias_latipes_hsok
ENSCSEG00000000955	hdlbpb	100	94.475	ENSOMEG00000011131	hdlbpb	100	94.475	Oryzias_melastigma
ENSCSEG00000000955	hdlbpb	100	87.952	ENSPKIG00000005966	hdlbpb	100	87.924	Paramormyrops_kingsleyae
ENSCSEG00000000955	hdlbpb	86	91.389	ENSPMGG00000019853	hdlbpb	99	91.389	Periophthalmus_magnuspinnatus
ENSCSEG00000000955	hdlbpb	93	77.307	ENSPMAG00000002131	hdlbpb	100	74.589	Petromyzon_marinus
ENSCSEG00000000955	hdlbpb	100	63.455	ENSPMAG00000000249	-	99	63.259	Petromyzon_marinus
ENSCSEG00000000955	hdlbpb	100	93.857	ENSPFOG00000008755	hdlbpb	100	93.682	Poecilia_formosa
ENSCSEG00000000955	hdlbpb	100	94.716	ENSPLAG00000007055	hdlbpb	100	94.716	Poecilia_latipinna
ENSCSEG00000000955	hdlbpb	100	94.637	ENSPMEG00000001952	hdlbpb	100	94.637	Poecilia_mexicana
ENSCSEG00000000955	hdlbpb	100	94.716	ENSPREG00000012848	hdlbpb	100	94.716	Poecilia_reticulata
ENSCSEG00000000955	hdlbpb	100	95.505	ENSPNYG00000022467	hdlbpb	100	95.505	Pundamilia_nyererei
ENSCSEG00000000955	hdlbpb	100	86.740	ENSPNAG00000011104	hdlbpb	100	86.740	Pygocentrus_nattereri
ENSCSEG00000000955	hdlbpb	100	87.435	ENSSFOG00015023199	hdlbpb	100	87.293	Scleropages_formosus
ENSCSEG00000000955	hdlbpb	100	95.347	ENSSMAG00000008790	hdlbpb	100	95.347	Scophthalmus_maximus
ENSCSEG00000000955	hdlbpb	100	96.688	ENSSDUG00000020694	hdlbpb	100	96.688	Seriola_dumerili
ENSCSEG00000000955	hdlbpb	100	96.215	ENSSLDG00000020807	hdlbpb	100	96.215	Seriola_lalandi_dorsalis
ENSCSEG00000000955	hdlbpb	100	82.163	ENSSPUG00000018688	-	100	82.163	Sphenodon_punctatus
ENSCSEG00000000955	hdlbpb	100	96.609	ENSSPAG00000016969	hdlbpb	100	96.609	Stegastes_partitus
ENSCSEG00000000955	hdlbpb	98	91.686	ENSTRUG00000012888	hdlbpb	99	91.686	Takifugu_rubripes
ENSCSEG00000000955	hdlbpb	99	93.265	ENSTNIG00000002555	hdlbpb	100	93.265	Tetraodon_nigroviridis
ENSCSEG00000000955	hdlbpb	100	83.393	ENSXCOG00000001797	hdlbpb	100	83.393	Xiphophorus_couchianus
ENSCSEG00000000955	hdlbpb	100	94.085	ENSXMAG00000015633	hdlbpb	100	94.085	Xiphophorus_maculatus