EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000001841 (Gene tree)
Gene ID: 103380998
Gene Symbol: -
Alias: -
Full Name: poly(A) polymerase type 3-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 10495 bases
Position: chr7:7511429-7521923
Accession: 103380998
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000002854	PAP_RNA-bind	PF04926.15	3.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000002887	-	1131	-	ENSCSEP00000002843	376 (aa)	-	-
ENSCSET00000002898	-	1947	XM_008313154	ENSCSEP00000002854	648 (aa)	XP_008311376	-
ENSCSET00000002841	-	345	-	ENSCSEP00000002797	114 (aa)	-	-
ENSCSET00000002903	-	693	-	ENSCSEP00000002859	230 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000001841's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000001841's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000001841	-	91	44.286	ENSCSEG00000000771	papolg	89	43.354

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000001841	-	71	53.734	ENSG00000090060	PAPOLA	92	64.516	Homo_sapiens
ENSCSEG00000001841	-	71	53.734	ENSAMEG00000014142	PAPOLA	65	53.734	Ailuropoda_melanoleuca
ENSCSEG00000001841	-	72	52.642	ENSAPLG00000006645	PAPOLA	85	45.541	Anas_platyrhynchos
ENSCSEG00000001841	-	80	48.649	ENSACAG00000013474	PAPOLA	75	52.495	Anolis_carolinensis
ENSCSEG00000001841	-	71	51.789	ENSANAG00000027941	-	88	51.789	Aotus_nancymaae
ENSCSEG00000001841	-	71	54.167	ENSANAG00000018274	PAPOLA	88	54.167	Aotus_nancymaae
ENSCSEG00000001841	-	71	54.132	ENSAMXG00000018141	papola	87	54.132	Astyanax_mexicanus
ENSCSEG00000001841	-	71	53.638	ENSBTAG00000004054	PAPOLA	69	53.638	Bos_taurus
ENSCSEG00000001841	-	71	54.167	ENSCJAG00000006512	PAPOLA	88	54.167	Callithrix_jacchus
ENSCSEG00000001841	-	71	53.734	ENSCAFG00000017783	PAPOLA	65	53.734	Canis_familiaris
ENSCSEG00000001841	-	81	49.910	ENSCAFG00020011550	PAPOLA	86	53.958	Canis_lupus_dingo
ENSCSEG00000001841	-	71	53.862	ENSCHIG00000025004	-	76	53.638	Capra_hircus
ENSCSEG00000001841	-	74	52.590	ENSTSYG00000012384	PAPOLA	72	52.590	Carlito_syrichta
ENSCSEG00000001841	-	71	50.417	ENSCPOG00000002648	PAPOLA	68	50.417	Cavia_porcellus
ENSCSEG00000001841	-	71	54.167	ENSCCAG00000025120	PAPOLA	87	54.167	Cebus_capucinus
ENSCSEG00000001841	-	71	54.167	ENSCATG00000018815	PAPOLA	89	54.167	Cercocebus_atys
ENSCSEG00000001841	-	71	53.958	ENSCLAG00000016342	PAPOLA	70	53.734	Chinchilla_lanigera
ENSCSEG00000001841	-	71	53.942	ENSCSAG00000010516	PAPOLA	65	53.942	Chlorocebus_sabaeus
ENSCSEG00000001841	-	71	53.527	ENSCPBG00000024125	PAPOLA	67	52.191	Chrysemys_picta_bellii
ENSCSEG00000001841	-	71	51.566	ENSCANG00000000159	PAPOLA	65	51.566	Colobus_angolensis_palliatus
ENSCSEG00000001841	-	74	52.883	ENSCGRG00001022693	-	91	45.781	Cricetulus_griseus_chok1gshd
ENSCSEG00000001841	-	74	50.000	ENSCGRG00001000229	-	85	44.062	Cricetulus_griseus_chok1gshd
ENSCSEG00000001841	-	88	40.000	ENSCGRG00001002732	-	84	43.303	Cricetulus_griseus_chok1gshd
ENSCSEG00000001841	-	71	54.054	ENSCGRG00000003664	-	90	46.440	Cricetulus_griseus_crigri
ENSCSEG00000001841	-	71	48.936	ENSCGRG00000001888	-	64	48.936	Cricetulus_griseus_crigri
ENSCSEG00000001841	-	74	47.791	ENSCGRG00000000257	-	89	42.344	Cricetulus_griseus_crigri
ENSCSEG00000001841	-	89	48.264	ENSDARG00000009585	papola	67	54.959	Danio_rerio
ENSCSEG00000001841	-	85	40.278	ENSETEG00000004889	PAPOLA	65	44.606	Echinops_telfairi
ENSCSEG00000001841	-	71	52.990	ENSELUG00000018972	papola	65	52.990	Esox_lucius
ENSCSEG00000001841	-	71	53.734	ENSFCAG00000006784	PAPOLA	70	53.734	Felis_catus
ENSCSEG00000001841	-	72	52.749	ENSFALG00000002547	PAPOLA	63	52.749	Ficedula_albicollis
ENSCSEG00000001841	-	71	53.958	ENSFDAG00000010370	PAPOLA	71	53.734	Fukomys_damarensis
ENSCSEG00000001841	-	72	52.749	ENSGALG00000033099	PAPOLA	67	52.749	Gallus_gallus
ENSCSEG00000001841	-	71	54.489	ENSGACG00000006142	-	100	54.489	Gasterosteus_aculeatus
ENSCSEG00000001841	-	71	53.750	ENSGAGG00000020500	PAPOLA	74	52.191	Gopherus_agassizii
ENSCSEG00000001841	-	71	54.968	ENSGGOG00000006287	PAPOLA	87	51.805	Gorilla_gorilla
ENSCSEG00000001841	-	70	44.374	ENSHGLG00000007467	-	66	40.254	Heterocephalus_glaber_female
ENSCSEG00000001841	-	87	41.484	ENSHGLG00000017457	-	83	44.118	Heterocephalus_glaber_female
ENSCSEG00000001841	-	71	53.958	ENSHGLG00000007909	-	70	53.734	Heterocephalus_glaber_female
ENSCSEG00000001841	-	71	53.862	ENSHGLG00100017273	PAPOLA	70	53.638	Heterocephalus_glaber_male
ENSCSEG00000001841	-	92	45.397	ENSIPUG00000005919	papola	80	45.397	Ictalurus_punctatus
ENSCSEG00000001841	-	71	53.942	ENSSTOG00000011471	PAPOLA	70	53.942	Ictidomys_tridecemlineatus
ENSCSEG00000001841	-	74	52.716	ENSJJAG00000024340	Papola	70	53.527	Jaculus_jaculus
ENSCSEG00000001841	-	89	44.610	ENSLACG00000018136	PAPOLA	66	49.800	Latimeria_chalumnae
ENSCSEG00000001841	-	81	43.253	ENSLOCG00000008632	papola	67	47.094	Lepisosteus_oculatus
ENSCSEG00000001841	-	71	53.527	ENSLAFG00000000946	PAPOLA	65	53.527	Loxodonta_africana
ENSCSEG00000001841	-	71	54.167	ENSMFAG00000001792	PAPOLA	88	54.167	Macaca_fascicularis
ENSCSEG00000001841	-	71	53.942	ENSMMUG00000018610	PAPOLA	69	53.942	Macaca_mulatta
ENSCSEG00000001841	-	71	54.167	ENSMNEG00000043747	PAPOLA	88	54.167	Macaca_nemestrina
ENSCSEG00000001841	-	71	53.942	ENSMLEG00000032066	PAPOLA	67	53.942	Mandrillus_leucophaeus
ENSCSEG00000001841	-	56	54.474	ENSMGAG00000013228	-	61	54.474	Meleagris_gallopavo
ENSCSEG00000001841	-	71	53.942	ENSMAUG00000017178	Papola	70	53.942	Mesocricetus_auratus
ENSCSEG00000001841	-	71	54.167	ENSMICG00000010347	PAPOLA	87	54.167	Microcebus_murinus
ENSCSEG00000001841	-	71	54.054	ENSMOCG00000021670	Papola	69	54.054	Microtus_ochrogaster
ENSCSEG00000001841	-	70	50.636	ENSMODG00000001969	-	66	50.636	Monodelphis_domestica
ENSCSEG00000001841	-	71	53.734	ENSMODG00000012887	-	65	53.734	Monodelphis_domestica
ENSCSEG00000001841	-	71	53.846	MGP_CAROLIEiJ_G0018093	Papola	69	53.846	Mus_caroli
ENSCSEG00000001841	-	71	53.846	ENSMUSG00000021111	Papola	69	53.846	Mus_musculus
ENSCSEG00000001841	-	71	53.846	MGP_PahariEiJ_G0029850	Papola	69	53.846	Mus_pahari
ENSCSEG00000001841	-	71	53.846	MGP_SPRETEiJ_G0018943	Papola	69	53.846	Mus_spretus
ENSCSEG00000001841	-	71	53.846	ENSMPUG00000003054	PAPOLA	65	53.846	Mustela_putorius_furo
ENSCSEG00000001841	-	89	46.365	ENSMLUG00000010922	PAPOLA	65	53.527	Myotis_lucifugus
ENSCSEG00000001841	-	71	54.054	ENSNGAG00000022172	Papola	72	52.883	Nannospalax_galili
ENSCSEG00000001841	-	81	49.909	ENSNLEG00000000625	PAPOLA	88	47.525	Nomascus_leucogenys
ENSCSEG00000001841	-	71	51.250	ENSOPRG00000007625	PAPOLA	66	51.250	Ochotona_princeps
ENSCSEG00000001841	-	71	58.996	ENSONIG00000001062	-	97	58.996	Oreochromis_niloticus
ENSCSEG00000001841	-	72	53.455	ENSOANG00000013812	PAPOLA	71	53.455	Ornithorhynchus_anatinus
ENSCSEG00000001841	-	71	53.430	ENSOCUG00000011531	PAPOLA	65	53.430	Oryctolagus_cuniculus
ENSCSEG00000001841	-	71	53.942	ENSOGAG00000004611	PAPOLA	65	53.942	Otolemur_garnettii
ENSCSEG00000001841	-	71	53.638	ENSOARG00000016579	-	65	53.638	Ovis_aries
ENSCSEG00000001841	-	71	55.202	ENSPPAG00000030505	PAPOLA	88	55.202	Pan_paniscus
ENSCSEG00000001841	-	71	53.734	ENSPPRG00000008616	PAPOLA	67	53.734	Panthera_pardus
ENSCSEG00000001841	-	71	53.734	ENSPTIG00000018852	PAPOLA	67	53.734	Panthera_tigris_altaica
ENSCSEG00000001841	-	71	54.968	ENSPTRG00000006704	PAPOLA	70	54.968	Pan_troglodytes
ENSCSEG00000001841	-	71	54.167	ENSPANG00000025582	PAPOLA	88	54.167	Papio_anubis
ENSCSEG00000001841	-	72	53.455	ENSPKIG00000014471	papola	71	53.455	Paramormyrops_kingsleyae
ENSCSEG00000001841	-	71	53.527	ENSPSIG00000014157	PAPOLA	58	52.191	Pelodiscus_sinensis
ENSCSEG00000001841	-	71	54.054	ENSPEMG00000000043	Papola	72	52.695	Peromyscus_maniculatus_bairdii
ENSCSEG00000001841	-	71	53.734	ENSPCIG00000013234	PAPOLA	70	53.734	Phascolarctos_cinereus
ENSCSEG00000001841	-	71	53.027	ENSPPYG00000006128	PAPOLA	64	53.027	Pongo_abelii
ENSCSEG00000001841	-	61	55.181	ENSPCAG00000004199	PAPOLA	63	55.181	Procavia_capensis
ENSCSEG00000001841	-	71	51.867	ENSPCOG00000022117	PAPOLA	86	51.667	Propithecus_coquereli
ENSCSEG00000001841	-	71	53.527	ENSPVAG00000013925	PAPOLA	65	53.527	Pteropus_vampyrus
ENSCSEG00000001841	-	71	54.959	ENSPNAG00000010467	papola	69	54.959	Pygocentrus_nattereri
ENSCSEG00000001841	-	71	53.846	ENSRNOG00000004827	Papola	65	53.846	Rattus_norvegicus
ENSCSEG00000001841	-	71	54.167	ENSRBIG00000038490	PAPOLA	89	54.167	Rhinopithecus_bieti
ENSCSEG00000001841	-	71	53.942	ENSRROG00000025545	PAPOLA	67	53.942	Rhinopithecus_roxellana
ENSCSEG00000001841	-	71	54.167	ENSSBOG00000024061	PAPOLA	88	54.167	Saimiri_boliviensis_boliviensis
ENSCSEG00000001841	-	71	53.942	ENSSHAG00000015211	PAPOLA	65	53.942	Sarcophilus_harrisii
ENSCSEG00000001841	-	86	48.187	ENSSFOG00015004431	papola	89	53.061	Scleropages_formosus
ENSCSEG00000001841	-	81	61.023	ENSSDUG00000018247	-	93	57.413	Seriola_dumerili
ENSCSEG00000001841	-	71	54.149	ENSSPUG00000005835	PAPOLA	67	52.789	Sphenodon_punctatus
ENSCSEG00000001841	-	71	53.734	ENSSSCG00000002505	-	70	53.734	Sus_scrofa
ENSCSEG00000001841	-	72	52.749	ENSTGUG00000012687	PAPOLA	67	52.749	Taeniopygia_guttata
ENSCSEG00000001841	-	53	51.811	ENSTBEG00000000194	PAPOLA	50	51.811	Tupaia_belangeri
ENSCSEG00000001841	-	71	46.667	ENSTTRG00000005717	PAPOLA	65	46.667	Tursiops_truncatus
ENSCSEG00000001841	-	61	56.479	ENSUAMG00000025737	PAPOLA	96	56.479	Ursus_americanus
ENSCSEG00000001841	-	71	53.734	ENSVPAG00000006464	PAPOLA	66	53.734	Vicugna_pacos
ENSCSEG00000001841	-	71	53.734	ENSVVUG00000028340	PAPOLA	70	53.734	Vulpes_vulpes
ENSCSEG00000001841	-	74	52.295	ENSXETG00000013949	papola	67	52.295	Xenopus_tropicalis