EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSEG00000002021 (Gene tree)
Gene ID
103377651
Gene Symbol
CPSF3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Plus strand
Length
9837 bases
Position
chr1:7565726-7575562
Accession
103377651
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSEP00000003086CPSF73-100_CPF11718.81.1e-4811
ENSCSEP00000003091CPSF73-100_CPF11718.81.2e-4811
ENSCSEP00000003104CPSF73-100_CPF11718.84.9e-4411
ENSCSEP00000003104Beta-CaspPF10996.87.1e-3411
ENSCSEP00000003086Beta-CaspPF10996.87.3e-3411
ENSCSEP00000003091Beta-CaspPF10996.88.2e-3411
ENSCSEP00000003091Lactamase_BPF00753.271.5e-1811
ENSCSEP00000003086Lactamase_BPF00753.273.4e-1511
ENSCSEP00000003104Lactamase_BPF00753.273.5e-0811
ENSCSEP00000003104RMMBLPF07521.125e-2111
ENSCSEP00000003086RMMBLPF07521.125.3e-2111
ENSCSEP00000003091RMMBLPF07521.125.8e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSET00000003135CPSF3-2025003XM_008308528ENSCSEP00000003091690 (aa)XP_008306750UPI000497120B
ENSCSET00000003130CPSF3-2015191-ENSCSEP00000003086646 (aa)--
ENSCSET00000003148CPSF3-2031869-ENSCSEP00000003104622 (aa)--
Gene Model
Click here to download ENSCSEG00000002021's gene model file
Pathways
Pathway IDPathway NameSource
csem03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000002021's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSEG00000002021CPSF36439.556ENSCSEG00000017374ints119534.583
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSEG00000002021CPSF39986.553ENSG00000119203CPSF310099.265Homo_sapiens
ENSCSEG00000002021CPSF39987.132ENSAPOG00000022087cpsf39987.083Acanthochromis_polyacanthus
ENSCSEG00000002021CPSF37497.835ENSAPOG00000012241CPSF39197.835Acanthochromis_polyacanthus
ENSCSEG00000002021CPSF39986.708ENSAMEG00000008493CPSF39986.931Ailuropoda_melanoleuca
ENSCSEG00000002021CPSF39985.103ENSACIG00000009846cpsf39985.103Amphilophus_citrinellus
ENSCSEG00000002021CPSF310089.515ENSACIG00000023663CPSF39991.772Amphilophus_citrinellus
ENSCSEG00000002021CPSF39987.287ENSAOCG00000022056cpsf39692.000Amphiprion_ocellaris
ENSCSEG00000002021CPSF310093.663ENSAOCG00000010077CPSF310093.343Amphiprion_ocellaris
ENSCSEG00000002021CPSF39987.442ENSAPEG00000019526cpsf39988.889Amphiprion_percula
ENSCSEG00000002021CPSF310093.663ENSAPEG00000021167CPSF310093.343Amphiprion_percula
ENSCSEG00000002021CPSF39987.287ENSATEG00000003959cpsf39987.228Anabas_testudineus
ENSCSEG00000002021CPSF310087.410ENSATEG00000014525CPSF310087.410Anabas_testudineus
ENSCSEG00000002021CPSF39986.244ENSAPLG00000006941CPSF39886.310Anas_platyrhynchos
ENSCSEG00000002021CPSF39884.434ENSACAG00000001759CPSF39984.434Anolis_carolinensis
ENSCSEG00000002021CPSF39981.453ENSANAG00000031254CPSF39982.036Aotus_nancymaae
ENSCSEG00000002021CPSF310089.358ENSACLG00000018846CPSF39991.772Astatotilapia_calliptera
ENSCSEG00000002021CPSF39987.287ENSACLG00000014484cpsf39987.669Astatotilapia_calliptera
ENSCSEG00000002021CPSF310088.253ENSAMXG00000004786cpsf310088.133Astyanax_mexicanus
ENSCSEG00000002021CPSF39986.708ENSBTAG00000019735CPSF39986.931Bos_taurus
ENSCSEG00000002021CPSF39455.840WBGene00013460cpsf-39255.860Caenorhabditis_elegans
ENSCSEG00000002021CPSF39986.399ENSCJAG00000006276CPSF39986.637Callithrix_jacchus
ENSCSEG00000002021CPSF39986.708ENSCAFG00000003375CPSF39686.087Canis_familiaris
ENSCSEG00000002021CPSF39089.691ENSCAFG00020026799CPSF39989.773Canis_lupus_dingo
ENSCSEG00000002021CPSF39986.708ENSCHIG00000013973CPSF39986.931Capra_hircus
ENSCSEG00000002021CPSF39986.553ENSTSYG00000002967CPSF39986.784Carlito_syrichta
ENSCSEG00000002021CPSF39986.862ENSCAPG00000013851CPSF39987.256Cavia_aperea
ENSCSEG00000002021CPSF39986.862ENSCPOG00000011299CPSF39987.078Cavia_porcellus
ENSCSEG00000002021CPSF39986.399ENSCCAG00000036730CPSF39986.826Cebus_capucinus
ENSCSEG00000002021CPSF39984.699ENSCATG00000014770CPSF39992.561Cercocebus_atys
ENSCSEG00000002021CPSF39986.862ENSCLAG00000002727CPSF39987.078Chinchilla_lanigera
ENSCSEG00000002021CPSF39978.207ENSCSAG00000007125CPSF39978.855Chlorocebus_sabaeus
ENSCSEG00000002021CPSF385100.000ENSCHOG00000000180CPSF38562.456Choloepus_hoffmanni
ENSCSEG00000002021CPSF39986.399ENSCPBG00000014074CPSF39986.252Chrysemys_picta_bellii
ENSCSEG00000002021CPSF39967.492ENSCING00000007214-9767.206Ciona_intestinalis
ENSCSEG00000002021CPSF39976.074ENSCANG00000034435CPSF39976.822Colobus_angolensis_palliatus
ENSCSEG00000002021CPSF39986.399ENSCGRG00001013134Cpsf39986.637Cricetulus_griseus_chok1gshd
ENSCSEG00000002021CPSF39986.399ENSCGRG00000018319Cpsf39986.637Cricetulus_griseus_crigri
ENSCSEG00000002021CPSF310092.736ENSCVAG00000015067CPSF310092.475Cyprinodon_variegatus
ENSCSEG00000002021CPSF310088.567ENSDARG00000027649cpsf310088.567Danio_rerio
ENSCSEG00000002021CPSF39985.648ENSDNOG00000008940CPSF39585.924Dasypus_novemcinctus
ENSCSEG00000002021CPSF39587.948ENSDORG00000014263Cpsf39988.117Dipodomys_ordii
ENSCSEG00000002021CPSF39966.147FBgn0261065Cpsf739966.032Drosophila_melanogaster
ENSCSEG00000002021CPSF39578.467ENSETEG00000003893CPSF39975.926Echinops_telfairi
ENSCSEG00000002021CPSF39975.639ENSEBUG00000009018cpsf39976.164Eptatretus_burgeri
ENSCSEG00000002021CPSF39986.708ENSEASG00005003970CPSF39986.931Equus_asinus_asinus
ENSCSEG00000002021CPSF39986.708ENSECAG00000019911CPSF39692.230Equus_caballus
ENSCSEG00000002021CPSF39871.806ENSEEUG00000015422CPSF39971.806Erinaceus_europaeus
ENSCSEG00000002021CPSF39990.698ENSELUG00000013775cpsf39990.421Esox_lucius
ENSCSEG00000002021CPSF39986.708ENSFCAG00000007852CPSF39986.931Felis_catus
ENSCSEG00000002021CPSF39986.399ENSFALG00000006572CPSF39986.399Ficedula_albicollis
ENSCSEG00000002021CPSF39986.223ENSFDAG00000006317CPSF39986.471Fukomys_damarensis
ENSCSEG00000002021CPSF36374.453ENSFHEG00000012186CPSF310074.453Fundulus_heteroclitus
ENSCSEG00000002021CPSF39985.922ENSFHEG00000014774cpsf39985.922Fundulus_heteroclitus
ENSCSEG00000002021CPSF310087.790ENSGMOG00000003157cpsf310087.554Gadus_morhua
ENSCSEG00000002021CPSF39985.471ENSGALG00000016424CPSF39985.465Gallus_gallus
ENSCSEG00000002021CPSF310092.736ENSGAFG00000008016CPSF310092.185Gambusia_affinis
ENSCSEG00000002021CPSF310083.810ENSGAFG00000019449cpsf310083.810Gambusia_affinis
ENSCSEG00000002021CPSF37282.051ENSGAGG00000025583CPSF39382.051Gopherus_agassizii
ENSCSEG00000002021CPSF39886.299ENSGGOG00000001757CPSF39197.204Gorilla_gorilla
ENSCSEG00000002021CPSF39987.287ENSHBUG00000001188cpsf39987.083Haplochromis_burtoni
ENSCSEG00000002021CPSF36386.453ENSHBUG00000014332CPSF310086.453Haplochromis_burtoni
ENSCSEG00000002021CPSF39986.533ENSHGLG00000000666CPSF39886.765Heterocephalus_glaber_female
ENSCSEG00000002021CPSF39986.533ENSHGLG00100007765CPSF39886.765Heterocephalus_glaber_male
ENSCSEG00000002021CPSF39986.232ENSHCOG00000007251cpsf39986.232Hippocampus_comes
ENSCSEG00000002021CPSF39992.260ENSHCOG00000015957CPSF39992.029Hippocampus_comes
ENSCSEG00000002021CPSF310088.717ENSIPUG00000023488cpsf310088.712Ictalurus_punctatus
ENSCSEG00000002021CPSF39986.244ENSSTOG00000004476CPSF39986.490Ictidomys_tridecemlineatus
ENSCSEG00000002021CPSF39986.244ENSJJAG00000023415Cpsf39986.490Jaculus_jaculus
ENSCSEG00000002021CPSF310093.045ENSKMAG00000007317CPSF310092.764Kryptolebias_marmoratus
ENSCSEG00000002021CPSF39985.631ENSKMAG00000002806cpsf39985.631Kryptolebias_marmoratus
ENSCSEG00000002021CPSF39594.780ENSLBEG00000013492CPSF39994.521Labrus_bergylta
ENSCSEG00000002021CPSF35882.656ENSLBEG00000015018-9982.656Labrus_bergylta
ENSCSEG00000002021CPSF39980.580ENSLBEG00000020569cpsf39680.580Labrus_bergylta
ENSCSEG00000002021CPSF310079.624ENSLACG00000008308CPSF310079.624Latimeria_chalumnae
ENSCSEG00000002021CPSF310089.555ENSLOCG00000016823cpsf310089.209Lepisosteus_oculatus
ENSCSEG00000002021CPSF39986.553ENSLAFG00000009467CPSF39985.882Loxodonta_africana
ENSCSEG00000002021CPSF39986.399ENSMFAG00000001339CPSF39494.167Macaca_fascicularis
ENSCSEG00000002021CPSF39986.399ENSMMUG00000018038CPSF39294.167Macaca_mulatta
ENSCSEG00000002021CPSF39991.000ENSMNEG00000039447CPSF39996.800Macaca_nemestrina
ENSCSEG00000002021CPSF39986.553ENSMLEG00000026825CPSF39297.198Mandrillus_leucophaeus
ENSCSEG00000002021CPSF310090.506ENSMAMG00000008835CPSF310090.506Mastacembelus_armatus
ENSCSEG00000002021CPSF310086.397ENSMAMG00000003076cpsf310086.397Mastacembelus_armatus
ENSCSEG00000002021CPSF310093.509ENSMZEG00005006258CPSF310093.198Maylandia_zebra
ENSCSEG00000002021CPSF39987.287ENSMZEG00005014358cpsf39987.083Maylandia_zebra
ENSCSEG00000002021CPSF39985.471ENSMGAG00000013995CPSF39985.907Meleagris_gallopavo
ENSCSEG00000002021CPSF35877.128ENSMAUG00000000166Cpsf39977.128Mesocricetus_auratus
ENSCSEG00000002021CPSF39981.269ENSMICG00000002363CPSF39981.765Microcebus_murinus
ENSCSEG00000002021CPSF39983.153ENSMOCG00000020067Cpsf39983.554Microtus_ochrogaster
ENSCSEG00000002021CPSF39982.946ENSMMOG00000018212CPSF39882.946Mola_mola
ENSCSEG00000002021CPSF37880.142ENSMMOG00000011923CPSF38580.142Mola_mola
ENSCSEG00000002021CPSF39985.627ENSMODG00000014703CPSF39985.901Monodelphis_domestica
ENSCSEG00000002021CPSF39888.162ENSMALG00000011474CPSF310088.162Monopterus_albus
ENSCSEG00000002021CPSF310087.635ENSMALG00000016416cpsf310087.265Monopterus_albus
ENSCSEG00000002021CPSF39986.399MGP_CAROLIEiJ_G0017640Cpsf39986.637Mus_caroli
ENSCSEG00000002021CPSF39986.399ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSCSEG00000002021CPSF39986.244MGP_PahariEiJ_G0029397Cpsf39986.490Mus_pahari
ENSCSEG00000002021CPSF39986.399MGP_SPRETEiJ_G0018481Cpsf39986.637Mus_spretus
ENSCSEG00000002021CPSF39986.687ENSMPUG00000013213CPSF39986.912Mustela_putorius_furo
ENSCSEG00000002021CPSF39986.574ENSMLUG00000010636CPSF39986.804Myotis_lucifugus
ENSCSEG00000002021CPSF39986.399ENSNGAG00000019836Cpsf39986.637Nannospalax_galili
ENSCSEG00000002021CPSF39891.772ENSNBRG00000010525CPSF39991.772Neolamprologus_brichardi
ENSCSEG00000002021CPSF39986.667ENSNBRG00000004770cpsf39986.357Neolamprologus_brichardi
ENSCSEG00000002021CPSF39986.399ENSNLEG00000013359CPSF39197.204Nomascus_leucogenys
ENSCSEG00000002021CPSF39957.585ENSMEUG00000013117-9956.241Notamacropus_eugenii
ENSCSEG00000002021CPSF39977.399ENSOPRG00000008902CPSF39978.088Ochotona_princeps
ENSCSEG00000002021CPSF39986.862ENSODEG00000003129CPSF39987.078Octodon_degus
ENSCSEG00000002021CPSF39987.442ENSONIG00000018812cpsf39987.373Oreochromis_niloticus
ENSCSEG00000002021CPSF38784.929ENSOANG00000008577CPSF39984.929Ornithorhynchus_anatinus
ENSCSEG00000002021CPSF39986.553ENSOCUG00000003728CPSF39986.784Oryctolagus_cuniculus
ENSCSEG00000002021CPSF39985.486ENSORLG00000018854cpsf39985.486Oryzias_latipes
ENSCSEG00000002021CPSF39985.341ENSORLG00020013331cpsf39985.341Oryzias_latipes_hni
ENSCSEG00000002021CPSF39985.486ENSORLG00015011017cpsf39985.486Oryzias_latipes_hsok
ENSCSEG00000002021CPSF39985.736ENSOMEG00000010647cpsf39585.631Oryzias_melastigma
ENSCSEG00000002021CPSF39975.889ENSOGAG00000001680CPSF39976.652Otolemur_garnettii
ENSCSEG00000002021CPSF39986.708ENSOARG00000015073CPSF39986.931Ovis_aries
ENSCSEG00000002021CPSF39986.553ENSPPAG00000042457CPSF39197.204Pan_paniscus
ENSCSEG00000002021CPSF39986.399ENSPPRG00000016790CPSF39986.931Panthera_pardus
ENSCSEG00000002021CPSF39986.399ENSPTIG00000003920CPSF39987.059Panthera_tigris_altaica
ENSCSEG00000002021CPSF39986.553ENSPTRG00000011638CPSF39197.204Pan_troglodytes
ENSCSEG00000002021CPSF39986.399ENSPANG00000016798CPSF39494.167Papio_anubis
ENSCSEG00000002021CPSF310090.108ENSPKIG00000023646cpsf310090.108Paramormyrops_kingsleyae
ENSCSEG00000002021CPSF39986.553ENSPSIG00000016144CPSF39985.756Pelodiscus_sinensis
ENSCSEG00000002021CPSF310082.022ENSPMGG00000006141-9490.792Periophthalmus_magnuspinnatus
ENSCSEG00000002021CPSF36386.207ENSPMGG00000015311CPSF310086.207Periophthalmus_magnuspinnatus
ENSCSEG00000002021CPSF39986.553ENSPEMG00000017668Cpsf39987.078Peromyscus_maniculatus_bairdii
ENSCSEG00000002021CPSF37988.624ENSPMAG00000004841cpsf310088.624Petromyzon_marinus
ENSCSEG00000002021CPSF39986.090ENSPCIG00000009823CPSF39887.136Phascolarctos_cinereus
ENSCSEG00000002021CPSF310085.471ENSPFOG00000015922cpsf310085.384Poecilia_formosa
ENSCSEG00000002021CPSF310092.272ENSPFOG00000010418-10091.606Poecilia_formosa
ENSCSEG00000002021CPSF310085.471ENSPLAG00000000882cpsf310085.384Poecilia_latipinna
ENSCSEG00000002021CPSF36388.177ENSPLAG00000021300-10088.177Poecilia_latipinna
ENSCSEG00000002021CPSF310085.626ENSPMEG00000018309cpsf310085.528Poecilia_mexicana
ENSCSEG00000002021CPSF310085.008ENSPREG00000004482CPSF310084.949Poecilia_reticulata
ENSCSEG00000002021CPSF310084.236ENSPREG00000014875cpsf310084.236Poecilia_reticulata
ENSCSEG00000002021CPSF39982.071ENSPPYG00000012666CPSF39982.526Pongo_abelii
ENSCSEG00000002021CPSF38467.742ENSPCAG00000015042CPSF38965.348Procavia_capensis
ENSCSEG00000002021CPSF38788.980ENSPCOG00000023016CPSF39789.247Propithecus_coquereli
ENSCSEG00000002021CPSF39986.687ENSPVAG00000005324CPSF39986.912Pteropus_vampyrus
ENSCSEG00000002021CPSF38895.612ENSPNYG00000021047CPSF39195.612Pundamilia_nyererei
ENSCSEG00000002021CPSF39987.287ENSPNYG00000004405cpsf39987.083Pundamilia_nyererei
ENSCSEG00000002021CPSF310088.872ENSPNAG00000023060cpsf310088.857Pygocentrus_nattereri
ENSCSEG00000002021CPSF39986.378ENSRNOG00000052418Cpsf39986.618Rattus_norvegicus
ENSCSEG00000002021CPSF39982.897ENSRBIG00000041615CPSF39982.769Rhinopithecus_bieti
ENSCSEG00000002021CPSF39986.553ENSRROG00000033792CPSF39986.784Rhinopithecus_roxellana
ENSCSEG00000002021CPSF38743.192YLR277CYSH18743.111Saccharomyces_cerevisiae
ENSCSEG00000002021CPSF39983.103ENSSBOG00000027263CPSF39783.607Saimiri_boliviensis_boliviensis
ENSCSEG00000002021CPSF39986.244ENSSHAG00000007024CPSF39986.490Sarcophilus_harrisii
ENSCSEG00000002021CPSF310089.954ENSSFOG00015002108cpsf310089.764Scleropages_formosus
ENSCSEG00000002021CPSF39989.465ENSSMAG00000020534CPSF39793.151Scophthalmus_maximus
ENSCSEG00000002021CPSF39986.822ENSSDUG00000002828cpsf39786.647Seriola_dumerili
ENSCSEG00000002021CPSF310094.281ENSSDUG00000018498CPSF310094.211Seriola_dumerili
ENSCSEG00000002021CPSF39986.977ENSSLDG00000008469cpsf39687.898Seriola_lalandi_dorsalis
ENSCSEG00000002021CPSF310094.281ENSSLDG00000005234CPSF310094.211Seriola_lalandi_dorsalis
ENSCSEG00000002021CPSF38983.099ENSSARG00000005186CPSF38983.616Sorex_araneus
ENSCSEG00000002021CPSF39984.178ENSSPUG00000015525CPSF39784.650Sphenodon_punctatus
ENSCSEG00000002021CPSF39987.597ENSSPAG00000018579cpsf39987.518Stegastes_partitus
ENSCSEG00000002021CPSF310093.818ENSSPAG00000002906CPSF310093.488Stegastes_partitus
ENSCSEG00000002021CPSF39986.708ENSSSCG00000020799CPSF39986.931Sus_scrofa
ENSCSEG00000002021CPSF39986.257ENSTGUG00000013016CPSF39986.257Taeniopygia_guttata
ENSCSEG00000002021CPSF39986.792ENSTRUG00000007030cpsf39886.792Takifugu_rubripes
ENSCSEG00000002021CPSF36377.094ENSTRUG00000013905CPSF310077.094Takifugu_rubripes
ENSCSEG00000002021CPSF38491.160ENSTBEG00000002707CPSF38491.160Tupaia_belangeri
ENSCSEG00000002021CPSF38674.209ENSTTRG00000000861CPSF38774.209Tursiops_truncatus
ENSCSEG00000002021CPSF39687.621ENSUAMG00000007535CPSF39487.805Ursus_americanus
ENSCSEG00000002021CPSF39986.708ENSUMAG00000003676CPSF39492.294Ursus_maritimus
ENSCSEG00000002021CPSF39587.134ENSVPAG00000008041CPSF310087.539Vicugna_pacos
ENSCSEG00000002021CPSF39986.708ENSVVUG00000002194CPSF39986.931Vulpes_vulpes
ENSCSEG00000002021CPSF39984.675ENSXETG00000008263cpsf39984.493Xenopus_tropicalis
ENSCSEG00000002021CPSF35886.595ENSXCOG00000000957-8786.595Xiphophorus_couchianus
ENSCSEG00000002021CPSF310085.818ENSXCOG00000019695cpsf310085.818Xiphophorus_couchianus
ENSCSEG00000002021CPSF310085.626ENSXMAG00000009784cpsf310085.626Xiphophorus_maculatus
ENSCSEG00000002021CPSF310092.272ENSXMAG00000027291CPSF310091.751Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us