EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000002064 (Gene tree)
Gene ID: 103383457
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 6097 bases
Position: chr9:4289288-4295384
Accession: 103383457
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000003149	RNA_bind	PF08675.11	8.3e-33	1	1
ENSCSEP00000003163	RNA_bind	PF08675.11	8.4e-33	1	1
ENSCSEP00000003149	CAF1	PF04857.20	5.9e-90	1	1
ENSCSEP00000003163	CAF1	PF04857.20	5.8e-67	1	2
ENSCSEP00000003163	CAF1	PF04857.20	5.8e-67	2	2
ENSCSEP00000003179	CAF1	PF04857.20	4.9e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000003224	-	591	-	ENSCSEP00000003179	196 (aa)	-	-
ENSCSET00000003208	-	2568	-	ENSCSEP00000003163	692 (aa)	-	-
ENSCSET00000003194	-	2747	XM_008316573	ENSCSEP00000003149	686 (aa)	XP_008314795	UPI000495EB38

Gene Model

Click here to download ENSCSEG00000002064's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000002064's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000002064	parn	100	69.608	ENSG00000140694	PARN	94	79.661	Homo_sapiens
ENSCSEG00000002064	parn	100	86.700	ENSAPOG00000019730	-	100	86.700	Acanthochromis_polyacanthus
ENSCSEG00000002064	parn	100	64.253	ENSAMEG00000011208	PARN	100	62.697	Ailuropoda_melanoleuca
ENSCSEG00000002064	parn	100	72.273	ENSACIG00000000619	parn	99	77.812	Amphilophus_citrinellus
ENSCSEG00000002064	parn	100	82.464	ENSAOCG00000003465	parn	100	82.319	Amphiprion_ocellaris
ENSCSEG00000002064	parn	72	86.789	ENSAPEG00000010661	parn	94	86.789	Amphiprion_percula
ENSCSEG00000002064	parn	100	84.716	ENSATEG00000004661	parn	100	84.716	Anabas_testudineus
ENSCSEG00000002064	parn	97	62.791	ENSAPLG00000013914	PARN	90	71.354	Anas_platyrhynchos
ENSCSEG00000002064	parn	100	64.865	ENSACAG00000004973	PARN	99	67.228	Anolis_carolinensis
ENSCSEG00000002064	parn	100	64.706	ENSANAG00000031516	PARN	94	79.661	Aotus_nancymaae
ENSCSEG00000002064	parn	100	82.533	ENSACLG00000004742	parn	100	82.703	Astatotilapia_calliptera
ENSCSEG00000002064	parn	100	71.364	ENSAMXG00000012390	parn	96	75.000	Astyanax_mexicanus
ENSCSEG00000002064	parn	100	63.348	ENSBTAG00000018097	PARN	95	67.870	Bos_taurus
ENSCSEG00000002064	parn	100	65.158	ENSCJAG00000015866	PARN	94	79.661	Callithrix_jacchus
ENSCSEG00000002064	parn	100	62.896	ENSCAFG00000018795	PARN	96	67.742	Canis_familiaris
ENSCSEG00000002064	parn	100	63.801	ENSCAFG00020024126	PARN	96	68.065	Canis_lupus_dingo
ENSCSEG00000002064	parn	100	63.348	ENSCHIG00000018143	PARN	95	68.943	Capra_hircus
ENSCSEG00000002064	parn	96	42.523	ENSCAPG00000007984	PARN	78	51.648	Cavia_aperea
ENSCSEG00000002064	parn	100	64.706	ENSCPOG00000002263	PARN	91	71.138	Cavia_porcellus
ENSCSEG00000002064	parn	100	65.158	ENSCCAG00000030367	PARN	94	79.661	Cebus_capucinus
ENSCSEG00000002064	parn	100	64.706	ENSCATG00000041368	PARN	95	75.791	Cercocebus_atys
ENSCSEG00000002064	parn	100	64.706	ENSCLAG00000015406	PARN	91	71.404	Chinchilla_lanigera
ENSCSEG00000002064	parn	100	64.706	ENSCSAG00000008142	PARN	95	69.431	Chlorocebus_sabaeus
ENSCSEG00000002064	parn	96	64.486	ENSCHOG00000007014	PARN	90	55.633	Choloepus_hoffmanni
ENSCSEG00000002064	parn	74	70.342	ENSCPBG00000006609	PARN	90	70.342	Chrysemys_picta_bellii
ENSCSEG00000002064	parn	98	33.628	ENSCING00000010142	-	99	42.322	Ciona_intestinalis
ENSCSEG00000002064	parn	100	57.778	ENSCANG00000028849	-	92	81.132	Colobus_angolensis_palliatus
ENSCSEG00000002064	parn	100	68.020	ENSCANG00000023734	-	100	68.020	Colobus_angolensis_palliatus
ENSCSEG00000002064	parn	100	61.538	ENSCGRG00001012096	Parn	90	71.231	Cricetulus_griseus_chok1gshd
ENSCSEG00000002064	parn	100	61.538	ENSCGRG00000004939	Parn	90	71.231	Cricetulus_griseus_crigri
ENSCSEG00000002064	parn	100	80.640	ENSCVAG00000014848	parn	100	80.640	Cyprinodon_variegatus
ENSCSEG00000002064	parn	100	64.545	ENSDARG00000102634	parn	100	64.986	Danio_rerio
ENSCSEG00000002064	parn	100	64.253	ENSDNOG00000000833	PARN	94	75.233	Dasypus_novemcinctus
ENSCSEG00000002064	parn	100	68.137	ENSDORG00000027812	-	100	68.137	Dipodomys_ordii
ENSCSEG00000002064	parn	100	64.126	ENSETEG00000014828	-	69	72.348	Echinops_telfairi
ENSCSEG00000002064	parn	100	64.253	ENSEASG00005011400	PARN	100	63.584	Equus_asinus_asinus
ENSCSEG00000002064	parn	100	63.801	ENSECAG00000017792	PARN	100	63.439	Equus_caballus
ENSCSEG00000002064	parn	99	54.054	ENSEEUG00000010370	PARN	73	79.630	Erinaceus_europaeus
ENSCSEG00000002064	parn	100	72.727	ENSELUG00000013139	parn	90	72.478	Esox_lucius
ENSCSEG00000002064	parn	100	64.253	ENSFCAG00000044961	PARN	99	79.245	Felis_catus
ENSCSEG00000002064	parn	96	63.084	ENSFALG00000003911	PARN	98	67.033	Ficedula_albicollis
ENSCSEG00000002064	parn	100	64.706	ENSFDAG00000009234	PARN	95	69.601	Fukomys_damarensis
ENSCSEG00000002064	parn	95	71.975	ENSFHEG00000013738	parn	92	89.831	Fundulus_heteroclitus
ENSCSEG00000002064	parn	100	74.545	ENSGMOG00000003231	parn	99	82.353	Gadus_morhua
ENSCSEG00000002064	parn	100	62.896	ENSGALG00000003091	PARN	94	70.302	Gallus_gallus
ENSCSEG00000002064	parn	100	79.330	ENSGAFG00000011061	parn	100	79.330	Gambusia_affinis
ENSCSEG00000002064	parn	100	75.455	ENSGACG00000019501	parn	100	73.199	Gasterosteus_aculeatus
ENSCSEG00000002064	parn	100	64.253	ENSGGOG00000025224	PARN	96	81.132	Gorilla_gorilla
ENSCSEG00000002064	parn	100	82.849	ENSHBUG00000017906	parn	100	82.849	Haplochromis_burtoni
ENSCSEG00000002064	parn	100	65.158	ENSHGLG00000010886	PARN	96	69.118	Heterocephalus_glaber_female
ENSCSEG00000002064	parn	100	65.158	ENSHGLG00100014659	PARN	96	69.118	Heterocephalus_glaber_male
ENSCSEG00000002064	parn	96	76.995	ENSHCOG00000008683	parn	94	80.256	Hippocampus_comes
ENSCSEG00000002064	parn	100	59.827	ENSIPUG00000012401	parn	100	60.029	Ictalurus_punctatus
ENSCSEG00000002064	parn	100	63.801	ENSSTOG00000007519	PARN	95	69.771	Ictidomys_tridecemlineatus
ENSCSEG00000002064	parn	100	63.348	ENSJJAG00000023049	Parn	92	71.007	Jaculus_jaculus
ENSCSEG00000002064	parn	100	82.533	ENSKMAG00000009462	parn	100	82.533	Kryptolebias_marmoratus
ENSCSEG00000002064	parn	100	79.545	ENSLBEG00000009167	parn	99	83.622	Labrus_bergylta
ENSCSEG00000002064	parn	100	59.009	ENSLACG00000004207	PARN	100	71.698	Latimeria_chalumnae
ENSCSEG00000002064	parn	100	69.683	ENSLOCG00000000715	parn	100	69.297	Lepisosteus_oculatus
ENSCSEG00000002064	parn	100	64.706	ENSLAFG00000015036	PARN	95	69.737	Loxodonta_africana
ENSCSEG00000002064	parn	100	63.452	ENSMFAG00000044852	PARN	94	79.661	Macaca_fascicularis
ENSCSEG00000002064	parn	100	64.706	ENSMMUG00000018849	PARN	94	79.661	Macaca_mulatta
ENSCSEG00000002064	parn	100	64.706	ENSMNEG00000045108	PARN	94	79.661	Macaca_nemestrina
ENSCSEG00000002064	parn	100	64.706	ENSMLEG00000031743	PARN	94	79.661	Mandrillus_leucophaeus
ENSCSEG00000002064	parn	100	85.072	ENSMAMG00000006939	parn	100	85.072	Mastacembelus_armatus
ENSCSEG00000002064	parn	100	82.533	ENSMZEG00005013590	parn	100	82.703	Maylandia_zebra
ENSCSEG00000002064	parn	81	69.772	ENSMGAG00000001004	PARN	89	69.772	Meleagris_gallopavo
ENSCSEG00000002064	parn	100	52.941	ENSMAUG00000008025	Parn	90	66.093	Mesocricetus_auratus
ENSCSEG00000002064	parn	61	31.206	ENSMAUG00000012298	Pnldc1	64	30.822	Mesocricetus_auratus
ENSCSEG00000002064	parn	100	63.801	ENSMICG00000016053	PARN	94	77.966	Microcebus_murinus
ENSCSEG00000002064	parn	100	61.991	ENSMOCG00000022211	Parn	100	76.162	Microtus_ochrogaster
ENSCSEG00000002064	parn	100	73.636	ENSMMOG00000011333	parn	90	85.560	Mola_mola
ENSCSEG00000002064	parn	100	63.677	ENSMODG00000004915	PARN	99	77.264	Monodelphis_domestica
ENSCSEG00000002064	parn	100	80.090	ENSMALG00000019426	parn	94	88.288	Monopterus_albus
ENSCSEG00000002064	parn	100	59.729	MGP_CAROLIEiJ_G0020466	Parn	89	70.442	Mus_caroli
ENSCSEG00000002064	parn	100	59.276	ENSMUSG00000022685	Parn	100	75.610	Mus_musculus
ENSCSEG00000002064	parn	100	60.181	MGP_PahariEiJ_G0016172	Parn	91	69.686	Mus_pahari
ENSCSEG00000002064	parn	100	59.729	MGP_SPRETEiJ_G0021361	Parn	89	70.442	Mus_spretus
ENSCSEG00000002064	parn	100	63.801	ENSMPUG00000014464	PARN	95	68.336	Mustela_putorius_furo
ENSCSEG00000002064	parn	100	63.348	ENSMLUG00000005414	PARN	100	75.960	Myotis_lucifugus
ENSCSEG00000002064	parn	100	68.473	ENSNGAG00000024082	-	100	68.473	Nannospalax_galili
ENSCSEG00000002064	parn	92	77.561	ENSNBRG00000006805	parn	93	85.353	Neolamprologus_brichardi
ENSCSEG00000002064	parn	100	64.706	ENSNLEG00000010241	PARN	91	79.661	Nomascus_leucogenys
ENSCSEG00000002064	parn	68	65.833	ENSMEUG00000008178	-	74	65.833	Notamacropus_eugenii
ENSCSEG00000002064	parn	90	62.189	ENSOPRG00000012187	PARN	90	67.308	Ochotona_princeps
ENSCSEG00000002064	parn	83	67.014	ENSODEG00000001617	PARN	91	67.014	Octodon_degus
ENSCSEG00000002064	parn	100	83.430	ENSONIG00000000151	parn	100	83.430	Oreochromis_niloticus
ENSCSEG00000002064	parn	69	57.500	ENSOANG00000029996	-	93	69.652	Ornithorhynchus_anatinus
ENSCSEG00000002064	parn	97	63.256	ENSOCUG00000000322	PARN	91	71.355	Oryctolagus_cuniculus
ENSCSEG00000002064	parn	100	79.310	ENSORLG00000024893	-	100	79.310	Oryzias_latipes
ENSCSEG00000002064	parn	100	78.280	ENSORLG00020010313	parn	100	78.426	Oryzias_latipes_hni
ENSCSEG00000002064	parn	100	78.134	ENSORLG00015000300	parn	100	78.280	Oryzias_latipes_hsok
ENSCSEG00000002064	parn	100	78.325	ENSOMEG00000019555	parn	100	77.438	Oryzias_melastigma
ENSCSEG00000002064	parn	100	62.780	ENSOGAG00000014626	PARN	100	75.806	Otolemur_garnettii
ENSCSEG00000002064	parn	100	63.348	ENSOARG00000007574	PARN	100	77.172	Ovis_aries
ENSCSEG00000002064	parn	100	64.706	ENSPPAG00000031438	PARN	94	79.661	Pan_paniscus
ENSCSEG00000002064	parn	100	64.253	ENSPPRG00000018583	PARN	99	79.245	Panthera_pardus
ENSCSEG00000002064	parn	100	64.253	ENSPTIG00000012135	PARN	99	79.245	Panthera_tigris_altaica
ENSCSEG00000002064	parn	100	64.706	ENSPTRG00000007792	PARN	94	79.661	Pan_troglodytes
ENSCSEG00000002064	parn	100	64.706	ENSPANG00000020099	PARN	92	81.132	Papio_anubis
ENSCSEG00000002064	parn	100	68.182	ENSPKIG00000022807	parn	96	67.283	Paramormyrops_kingsleyae
ENSCSEG00000002064	parn	100	63.801	ENSPSIG00000014804	PARN	91	71.039	Pelodiscus_sinensis
ENSCSEG00000002064	parn	100	73.182	ENSPMGG00000014431	parn	84	77.467	Periophthalmus_magnuspinnatus
ENSCSEG00000002064	parn	100	60.909	ENSPEMG00000018439	Parn	90	69.527	Peromyscus_maniculatus_bairdii
ENSCSEG00000002064	parn	100	56.306	ENSPMAG00000003956	parn	100	68.880	Petromyzon_marinus
ENSCSEG00000002064	parn	99	60.274	ENSPCIG00000001259	PARN	91	77.966	Phascolarctos_cinereus
ENSCSEG00000002064	parn	100	78.748	ENSPFOG00000012823	parn	100	78.748	Poecilia_formosa
ENSCSEG00000002064	parn	100	78.894	ENSPLAG00000006395	parn	100	78.894	Poecilia_latipinna
ENSCSEG00000002064	parn	100	79.039	ENSPMEG00000007711	parn	100	79.039	Poecilia_mexicana
ENSCSEG00000002064	parn	100	79.476	ENSPREG00000000147	parn	100	79.476	Poecilia_reticulata
ENSCSEG00000002064	parn	100	63.677	ENSPPYG00000007123	PARN	95	68.447	Pongo_abelii
ENSCSEG00000002064	parn	83	62.032	ENSPCAG00000001741	PARN	82	65.873	Procavia_capensis
ENSCSEG00000002064	parn	100	63.801	ENSPCOG00000019292	PARN	91	77.966	Propithecus_coquereli
ENSCSEG00000002064	parn	96	64.019	ENSPVAG00000002547	PARN	92	67.863	Pteropus_vampyrus
ENSCSEG00000002064	parn	100	82.558	ENSPNYG00000006835	parn	100	82.558	Pundamilia_nyererei
ENSCSEG00000002064	parn	93	69.362	ENSPNAG00000018905	parn	100	69.362	Pygocentrus_nattereri
ENSCSEG00000002064	parn	100	60.181	ENSRNOG00000002912	Parn	96	77.551	Rattus_norvegicus
ENSCSEG00000002064	parn	98	61.468	ENSSBOG00000034726	PARN	94	79.661	Saimiri_boliviensis_boliviensis
ENSCSEG00000002064	parn	97	63.721	ENSSHAG00000008493	PARN	93	75.359	Sarcophilus_harrisii
ENSCSEG00000002064	parn	100	69.545	ENSSFOG00015014165	parn	99	71.452	Scleropages_formosus
ENSCSEG00000002064	parn	100	83.143	ENSSMAG00000000685	parn	100	83.429	Scophthalmus_maximus
ENSCSEG00000002064	parn	100	86.502	ENSSDUG00000014555	parn	100	86.938	Seriola_dumerili
ENSCSEG00000002064	parn	100	86.224	ENSSLDG00000007603	-	100	86.224	Seriola_lalandi_dorsalis
ENSCSEG00000002064	parn	63	77.011	ENSSARG00000014339	PARN	75	77.011	Sorex_araneus
ENSCSEG00000002064	parn	100	66.063	ENSSPUG00000007719	PARN	91	72.337	Sphenodon_punctatus
ENSCSEG00000002064	parn	100	84.593	ENSSPAG00000007095	parn	100	84.593	Stegastes_partitus
ENSCSEG00000002064	parn	100	63.348	ENSSSCG00000007878	PARN	89	63.808	Sus_scrofa
ENSCSEG00000002064	parn	97	63.256	ENSTGUG00000004971	PARN	99	66.928	Taeniopygia_guttata
ENSCSEG00000002064	parn	100	79.091	ENSTNIG00000008252	parn	100	75.907	Tetraodon_nigroviridis
ENSCSEG00000002064	parn	75	58.052	ENSTBEG00000010407	PARN	100	52.283	Tupaia_belangeri
ENSCSEG00000002064	parn	96	64.019	ENSTTRG00000002843	PARN	77	76.386	Tursiops_truncatus
ENSCSEG00000002064	parn	65	66.075	ENSUAMG00000008283	PARN	92	66.075	Ursus_americanus
ENSCSEG00000002064	parn	100	63.801	ENSUMAG00000004527	PARN	100	62.931	Ursus_maritimus
ENSCSEG00000002064	parn	96	64.019	ENSVPAG00000008968	PARN	98	66.831	Vicugna_pacos
ENSCSEG00000002064	parn	100	63.348	ENSVVUG00000019509	PARN	96	68.065	Vulpes_vulpes
ENSCSEG00000002064	parn	100	64.091	ENSXETG00000010994	parn	100	75.141	Xenopus_tropicalis
ENSCSEG00000002064	parn	100	75.455	ENSXCOG00000015990	parn	99	78.788	Xiphophorus_couchianus
ENSCSEG00000002064	parn	100	79.009	ENSXMAG00000014783	parn	100	79.009	Xiphophorus_maculatus