EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000002358 (Gene tree)
Gene ID: 103388253
Gene Symbol: rab13
Alias: cb764|hm:zeh0455
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 8682 bases
Position: chr13:4913720-4922401
Accession: 103388253
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000003603	MMR_HSR1	PF01926.23	0.00011	1	1
ENSCSEP00000003599	MMR_HSR1	PF01926.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000003650	-	1214	-	ENSCSEP00000003603	203 (aa)	-	-
ENSCSET00000003647	-	5079	XM_008323164	ENSCSEP00000003599	200 (aa)	XP_008321386	UPI000494FC7D

Gene Model

Click here to download ENSCSEG00000002358's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000002358's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000002358	rab13	64	34.884	ENSCSEG00000015746	-	94	35.461
ENSCSEG00000002358	rab13	82	47.561	ENSCSEG00000016803	rab18b	83	47.561
ENSCSEG00000002358	rab13	87	38.202	ENSCSEG00000005357	-	86	38.202
ENSCSEG00000002358	rab13	59	30.252	ENSCSEG00000014890	arl4aa	60	30.252
ENSCSEG00000002358	rab13	84	30.726	ENSCSEG00000014284	dnajc27	66	30.726
ENSCSEG00000002358	rab13	87	47.399	ENSCSEG00000007239	-	82	46.067
ENSCSEG00000002358	rab13	96	42.289	ENSCSEG00000011996	rab11al	93	45.055
ENSCSEG00000002358	rab13	84	39.306	ENSCSEG00000010116	rab9a	81	39.306
ENSCSEG00000002358	rab13	77	31.875	ENSCSEG00000017910	-	75	31.875
ENSCSEG00000002358	rab13	89	42.938	ENSCSEG00000017026	rab25a	84	42.938
ENSCSEG00000002358	rab13	90	44.865	ENSCSEG00000011816	rab18a	88	44.865
ENSCSEG00000002358	rab13	74	42.484	ENSCSEG00000014479	-	63	42.763
ENSCSEG00000002358	rab13	79	40.000	ENSCSEG00000012961	rab34a	62	40.000
ENSCSEG00000002358	rab13	82	36.970	ENSCSEG00000010565	rab23	84	36.723
ENSCSEG00000002358	rab13	77	36.364	ENSCSEG00000016611	rheb	83	36.364
ENSCSEG00000002358	rab13	95	53.684	ENSCSEG00000020977	-	88	53.684
ENSCSEG00000002358	rab13	84	51.479	ENSCSEG00000010402	-	78	51.479
ENSCSEG00000002358	rab13	79	44.937	ENSCSEG00000016556	rab6bb	76	44.937
ENSCSEG00000002358	rab13	90	31.551	ENSCSEG00000015770	si:cabz01085950.1	91	31.551
ENSCSEG00000002358	rab13	84	42.690	ENSCSEG00000019183	si:dkey-34d22.5	77	42.690
ENSCSEG00000002358	rab13	86	50.581	ENSCSEG00000016933	rab12	84	45.813
ENSCSEG00000002358	rab13	94	42.632	ENSCSEG00000011982	rab25b	88	43.229
ENSCSEG00000002358	rab13	93	46.277	ENSCSEG00000007383	rab11a	87	46.277
ENSCSEG00000002358	rab13	94	30.612	ENSCSEG00000020208	rasl11b	78	30.612
ENSCSEG00000002358	rab13	59	30.252	ENSCSEG00000007479	ARL4A	59	30.252
ENSCSEG00000002358	rab13	85	45.930	ENSCSEG00000017861	-	81	45.930
ENSCSEG00000002358	rab13	87	38.202	ENSCSEG00000002970	RAB7A	80	38.202
ENSCSEG00000002358	rab13	84	41.420	ENSCSEG00000010582	rab42a	78	41.420
ENSCSEG00000002358	rab13	96	35.897	ENSCSEG00000011820	rras	96	35.897
ENSCSEG00000002358	rab13	84	36.471	ENSCSEG00000018987	si:ch73-116o1.2	85	35.393
ENSCSEG00000002358	rab13	85	56.471	ENSCSEG00000003768	rab15	72	56.471
ENSCSEG00000002358	rab13	91	37.368	ENSCSEG00000014467	rab9b	84	37.368
ENSCSEG00000002358	rab13	85	33.908	ENSCSEG00000003537	rhebl1	94	33.908
ENSCSEG00000002358	rab13	98	52.041	ENSCSEG00000018732	rab1ba	93	52.041
ENSCSEG00000002358	rab13	84	44.311	ENSCSEG00000016498	rab14	78	44.311
ENSCSEG00000002358	rab13	92	36.181	ENSCSEG00000020348	rab33ba	83	36.181
ENSCSEG00000002358	rab13	81	42.169	ENSCSEG00000019797	rab22a	83	42.169
ENSCSEG00000002358	rab13	91	40.394	ENSCSEG00000006243	zgc:101559	85	40.394
ENSCSEG00000002358	rab13	88	55.429	ENSCSEG00000000205	RAB15	85	55.429
ENSCSEG00000002358	rab13	80	45.732	ENSCSEG00000016284	rab33a	59	45.732
ENSCSEG00000002358	rab13	98	43.367	ENSCSEG00000017211	rab2a	92	43.367
ENSCSEG00000002358	rab13	86	34.483	ENSCSEG00000009987	rras2	87	34.091
ENSCSEG00000002358	rab13	56	54.955	ENSCSEG00000009988	si:dkey-16l2.16	85	54.955
ENSCSEG00000002358	rab13	92	45.789	ENSCSEG00000007292	rab30	94	45.789
ENSCSEG00000002358	rab13	82	32.317	ENSCSEG00000005479	rabl2	70	32.317
ENSCSEG00000002358	rab13	88	46.629	ENSCSEG00000012149	rab11bb	82	46.629
ENSCSEG00000002358	rab13	79	44.304	ENSCSEG00000004941	rab41	75	44.304
ENSCSEG00000002358	rab13	80	32.749	ENSCSEG00000000717	rasl11a	68	32.749
ENSCSEG00000002358	rab13	69	31.159	ENSCSEG00000013309	arl3	71	31.159
ENSCSEG00000002358	rab13	86	53.216	ENSCSEG00000013400	rab35b	100	47.525
ENSCSEG00000002358	rab13	85	44.767	ENSCSEG00000019722	RAB39B	81	44.767
ENSCSEG00000002358	rab13	73	37.838	ENSCSEG00000018133	rab34b	59	37.838
ENSCSEG00000002358	rab13	87	46.328	ENSCSEG00000007121	rab11ba	69	46.328
ENSCSEG00000002358	rab13	95	37.755	ENSCSEG00000017024	rab5c	88	37.755
ENSCSEG00000002358	rab13	97	53.608	ENSCSEG00000014416	zgc:171927	89	53.608
ENSCSEG00000002358	rab13	81	37.654	ENSCSEG00000005737	kras	98	35.751
ENSCSEG00000002358	rab13	79	43.671	ENSCSEG00000003122	rab6ba	76	43.671
ENSCSEG00000002358	rab13	96	35.938	ENSCSEG00000007927	hrasb	98	35.938

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000002358	rab13	99	75.980	ENSG00000143545	RAB13	99	75.980	Homo_sapiens
ENSCSEG00000002358	rab13	91	92.857	ENSACIG00000008584	rab13	94	88.265	Amphilophus_citrinellus
ENSCSEG00000002358	rab13	99	76.961	ENSANAG00000030247	-	99	76.961	Aotus_nancymaae
ENSCSEG00000002358	rab13	100	91.584	ENSAMXG00000030712	rab13	100	91.584	Astyanax_mexicanus
ENSCSEG00000002358	rab13	99	75.000	ENSBTAG00000017604	RAB13	99	75.000	Bos_taurus
ENSCSEG00000002358	rab13	81	47.531	WBGene00019317	K02E10.1	74	47.531	Caenorhabditis_elegans
ENSCSEG00000002358	rab13	89	83.240	ENSCJAG00000009933	-	99	75.980	Callithrix_jacchus
ENSCSEG00000002358	rab13	99	75.000	ENSCHIG00000022271	-	99	75.000	Capra_hircus
ENSCSEG00000002358	rab13	99	76.471	ENSCPOG00000011491	-	99	76.471	Cavia_porcellus
ENSCSEG00000002358	rab13	99	75.980	ENSCCAG00000028502	-	99	75.980	Cebus_capucinus
ENSCSEG00000002358	rab13	99	75.980	ENSCATG00000041779	-	99	75.980	Cercocebus_atys
ENSCSEG00000002358	rab13	99	75.728	ENSCLAG00000006603	-	99	75.728	Chinchilla_lanigera
ENSCSEG00000002358	rab13	99	75.980	ENSCANG00000036573	-	99	75.980	Colobus_angolensis_palliatus
ENSCSEG00000002358	rab13	99	75.980	ENSCGRG00001021505	Rab13	99	75.980	Cricetulus_griseus_chok1gshd
ENSCSEG00000002358	rab13	99	75.980	ENSCGRG00000012126	Rab13	99	75.980	Cricetulus_griseus_crigri
ENSCSEG00000002358	rab13	100	91.500	ENSDARG00000034771	rab13	100	91.500	Danio_rerio
ENSCSEG00000002358	rab13	99	77.723	ENSDORG00000001591	Rab13	99	77.723	Dipodomys_ordii
ENSCSEG00000002358	rab13	99	76.238	ENSEASG00005000683	-	99	76.238	Equus_asinus_asinus
ENSCSEG00000002358	rab13	99	76.238	ENSECAG00000016551	RAB13	99	76.238	Equus_caballus
ENSCSEG00000002358	rab13	100	72.906	ENSEEUG00000001233	-	100	72.906	Erinaceus_europaeus
ENSCSEG00000002358	rab13	100	90.500	ENSELUG00000012801	rab13	100	90.500	Esox_lucius
ENSCSEG00000002358	rab13	99	75.490	ENSFCAG00000045269	-	99	75.490	Felis_catus
ENSCSEG00000002358	rab13	66	87.879	ENSFDAG00000014469	-	100	87.879	Fukomys_damarensis
ENSCSEG00000002358	rab13	100	90.000	ENSFHEG00000021221	rab13	97	93.785	Fundulus_heteroclitus
ENSCSEG00000002358	rab13	100	93.500	ENSGACG00000011925	rab13	99	93.500	Gasterosteus_aculeatus
ENSCSEG00000002358	rab13	91	81.967	ENSGAGG00000000742	-	100	77.228	Gopherus_agassizii
ENSCSEG00000002358	rab13	99	75.980	ENSGGOG00000023693	RAB13	99	75.980	Gorilla_gorilla
ENSCSEG00000002358	rab13	99	75.622	ENSHGLG00000008749	RAB13	99	75.622	Heterocephalus_glaber_female
ENSCSEG00000002358	rab13	99	75.622	ENSHGLG00100013608	RAB13	99	75.622	Heterocephalus_glaber_male
ENSCSEG00000002358	rab13	100	88.000	ENSHCOG00000007440	rab13	99	95.556	Hippocampus_comes
ENSCSEG00000002358	rab13	100	91.542	ENSIPUG00000003199	rab13	100	91.542	Ictalurus_punctatus
ENSCSEG00000002358	rab13	99	77.451	ENSSTOG00000011222	-	99	77.451	Ictidomys_tridecemlineatus
ENSCSEG00000002358	rab13	99	76.733	ENSJJAG00000010575	Rab13	99	76.733	Jaculus_jaculus
ENSCSEG00000002358	rab13	100	89.000	ENSKMAG00000001908	rab13	100	89.000	Kryptolebias_marmoratus
ENSCSEG00000002358	rab13	100	93.500	ENSLBEG00000026779	rab13	100	93.500	Labrus_bergylta
ENSCSEG00000002358	rab13	89	76.271	ENSLACG00000008103	-	100	76.404	Latimeria_chalumnae
ENSCSEG00000002358	rab13	99	75.980	ENSMFAG00000041018	RAB13	99	75.980	Macaca_fascicularis
ENSCSEG00000002358	rab13	99	75.980	ENSMNEG00000028951	-	99	75.980	Macaca_nemestrina
ENSCSEG00000002358	rab13	99	75.980	ENSMLEG00000042247	-	99	75.980	Mandrillus_leucophaeus
ENSCSEG00000002358	rab13	100	92.500	ENSMAMG00000014602	rab13	100	92.500	Mastacembelus_armatus
ENSCSEG00000002358	rab13	99	75.248	ENSMAUG00000015713	Rab13	99	75.248	Mesocricetus_auratus
ENSCSEG00000002358	rab13	99	77.451	ENSMICG00000010340	-	99	77.451	Microcebus_murinus
ENSCSEG00000002358	rab13	99	76.733	ENSMOCG00000021448	Rab13	99	76.733	Microtus_ochrogaster
ENSCSEG00000002358	rab13	99	77.941	ENSMODG00000017295	-	84	77.941	Monodelphis_domestica
ENSCSEG00000002358	rab13	99	75.490	MGP_CAROLIEiJ_G0025227	Rab13	99	75.490	Mus_caroli
ENSCSEG00000002358	rab13	99	74.757	ENSMUSG00000027935	Rab13	99	74.757	Mus_musculus
ENSCSEG00000002358	rab13	100	75.610	MGP_PahariEiJ_G0026671	Rab13	100	75.610	Mus_pahari
ENSCSEG00000002358	rab13	99	76.471	ENSNGAG00000010309	Rab13	99	76.471	Nannospalax_galili
ENSCSEG00000002358	rab13	100	93.000	ENSNBRG00000004124	rab13	100	93.000	Neolamprologus_brichardi
ENSCSEG00000002358	rab13	99	75.980	ENSNLEG00000028944	-	94	81.622	Nomascus_leucogenys
ENSCSEG00000002358	rab13	99	78.218	ENSMEUG00000009667	-	99	78.218	Notamacropus_eugenii
ENSCSEG00000002358	rab13	99	75.980	ENSODEG00000010443	-	99	75.980	Octodon_degus
ENSCSEG00000002358	rab13	64	88.189	ENSODEG00000012634	-	100	88.189	Octodon_degus
ENSCSEG00000002358	rab13	100	88.614	ENSONIG00000006340	rab13	100	88.614	Oreochromis_niloticus
ENSCSEG00000002358	rab13	87	84.393	ENSOCUG00000006286	-	97	84.393	Oryctolagus_cuniculus
ENSCSEG00000002358	rab13	100	93.500	ENSOMEG00000008210	rab13	100	93.500	Oryzias_melastigma
ENSCSEG00000002358	rab13	99	76.000	ENSOGAG00000016969	-	99	76.000	Otolemur_garnettii
ENSCSEG00000002358	rab13	99	75.980	ENSPPAG00000028435	-	99	75.980	Pan_paniscus
ENSCSEG00000002358	rab13	99	75.490	ENSPPRG00000008865	-	99	75.490	Panthera_pardus
ENSCSEG00000002358	rab13	99	75.980	ENSPTRG00000001370	RAB13	99	75.980	Pan_troglodytes
ENSCSEG00000002358	rab13	99	75.980	ENSPANG00000004479	-	99	75.980	Papio_anubis
ENSCSEG00000002358	rab13	100	91.500	ENSPMGG00000007680	rab13	100	91.500	Periophthalmus_magnuspinnatus
ENSCSEG00000002358	rab13	63	78.030	ENSPEMG00000017353	-	99	78.030	Peromyscus_maniculatus_bairdii
ENSCSEG00000002358	rab13	99	78.218	ENSPCIG00000029350	-	99	78.218	Phascolarctos_cinereus
ENSCSEG00000002358	rab13	89	94.350	ENSPLAG00000005832	RAB13	99	90.860	Poecilia_latipinna
ENSCSEG00000002358	rab13	100	91.000	ENSPREG00000017567	rab13	100	91.000	Poecilia_reticulata
ENSCSEG00000002358	rab13	99	75.980	ENSPPYG00000000790	-	99	75.980	Pongo_abelii
ENSCSEG00000002358	rab13	99	77.451	ENSPCOG00000012189	-	99	77.451	Propithecus_coquereli
ENSCSEG00000002358	rab13	99	76.238	ENSPVAG00000011095	-	99	76.238	Pteropus_vampyrus
ENSCSEG00000002358	rab13	95	91.192	ENSPNAG00000004189	rab13	99	91.192	Pygocentrus_nattereri
ENSCSEG00000002358	rab13	99	76.471	ENSRNOG00000016733	Rab13	99	76.471	Rattus_norvegicus
ENSCSEG00000002358	rab13	99	75.980	ENSRBIG00000008552	-	99	75.980	Rhinopithecus_bieti
ENSCSEG00000002358	rab13	99	75.980	ENSRROG00000036885	-	99	75.980	Rhinopithecus_roxellana
ENSCSEG00000002358	rab13	99	76.471	ENSSBOG00000020342	-	99	76.471	Saimiri_boliviensis_boliviensis
ENSCSEG00000002358	rab13	99	78.218	ENSSHAG00000011866	-	99	78.218	Sarcophilus_harrisii
ENSCSEG00000002358	rab13	99	75.980	ENSSSCG00000006564	-	99	75.980	Sus_scrofa
ENSCSEG00000002358	rab13	100	94.500	ENSTRUG00000024177	rab13	100	94.500	Takifugu_rubripes
ENSCSEG00000002358	rab13	99	76.733	ENSTBEG00000012734	-	99	76.733	Tupaia_belangeri
ENSCSEG00000002358	rab13	99	75.980	ENSTTRG00000011183	-	99	75.980	Tursiops_truncatus
ENSCSEG00000002358	rab13	69	78.986	ENSXETG00000020729	rab13	100	71.875	Xenopus_tropicalis
ENSCSEG00000002358	rab13	89	93.220	ENSXCOG00000019533	rab13	96	92.737	Xiphophorus_couchianus