EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000002361 (Gene tree)
Gene ID: 103382240
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 5305 bases
Position: chr8:14487403-14492707
Accession: 103382240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000003613	DND1_DSRM	PF14709.7	1.4e-27	1	1
ENSCSEP00000003621	DND1_DSRM	PF14709.7	1.6e-27	1	1
ENSCSEP00000003613	RRM_1	PF00076.22	1.4e-41	1	3
ENSCSEP00000003613	RRM_1	PF00076.22	1.4e-41	2	3
ENSCSEP00000003613	RRM_1	PF00076.22	1.4e-41	3	3
ENSCSEP00000003621	RRM_1	PF00076.22	3.2e-40	1	3
ENSCSEP00000003621	RRM_1	PF00076.22	3.2e-40	2	3
ENSCSEP00000003621	RRM_1	PF00076.22	3.2e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000003668	-	1794	-	ENSCSEP00000003621	597 (aa)	-	-
ENSCSET00000003660	-	2430	XM_017034546	ENSCSEP00000003613	614 (aa)	XP_016890035	UPI000497D7EF

Gene Model

Click here to download ENSCSEG00000002361's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000002361's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000002361	a1cf	54	50.613	ENSCSEG00000005893	syncrip	51	50.000
ENSCSEG00000002361	a1cf	90	50.738	ENSCSEG00000004545	rbm47	74	55.484
ENSCSEG00000002361	a1cf	87	60.135	ENSCSEG00000005530	rbm46	96	61.672
ENSCSEG00000002361	a1cf	50	52.751	ENSCSEG00000008039	hnrnpr	51	50.784

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000002361	a1cf	100	76.119	ENSG00000148584	A1CF	100	83.168	Homo_sapiens
ENSCSEG00000002361	a1cf	100	81.758	ENSAPOG00000008259	a1cf	100	81.758	Acanthochromis_polyacanthus
ENSCSEG00000002361	a1cf	100	75.622	ENSAMEG00000000523	A1CF	100	74.627	Ailuropoda_melanoleuca
ENSCSEG00000002361	a1cf	100	86.851	ENSACIG00000008632	a1cf	100	86.201	Amphilophus_citrinellus
ENSCSEG00000002361	a1cf	100	83.199	ENSAOCG00000023744	a1cf	100	83.687	Amphiprion_ocellaris
ENSCSEG00000002361	a1cf	100	84.829	ENSAPEG00000009537	a1cf	100	84.992	Amphiprion_percula
ENSCSEG00000002361	a1cf	100	85.622	ENSATEG00000013720	a1cf	100	85.691	Anabas_testudineus
ENSCSEG00000002361	a1cf	100	76.285	ENSAPLG00000002964	A1CF	100	74.465	Anas_platyrhynchos
ENSCSEG00000002361	a1cf	100	74.465	ENSACAG00000015269	A1CF	100	74.629	Anolis_carolinensis
ENSCSEG00000002361	a1cf	100	75.622	ENSANAG00000019974	A1CF	100	74.129	Aotus_nancymaae
ENSCSEG00000002361	a1cf	100	82.955	ENSACLG00000017428	a1cf	100	82.630	Astatotilapia_calliptera
ENSCSEG00000002361	a1cf	100	76.190	ENSAMXG00000018180	a1cf	100	75.698	Astyanax_mexicanus
ENSCSEG00000002361	a1cf	100	75.581	ENSBTAG00000021195	A1CF	100	74.419	Bos_taurus
ENSCSEG00000002361	a1cf	100	76.412	ENSCJAG00000005045	A1CF	100	75.124	Callithrix_jacchus
ENSCSEG00000002361	a1cf	100	74.917	ENSCAFG00000015581	A1CF	100	74.129	Canis_familiaris
ENSCSEG00000002361	a1cf	100	74.917	ENSCAFG00020026421	A1CF	98	80.936	Canis_lupus_dingo
ENSCSEG00000002361	a1cf	100	76.412	ENSCHIG00000020411	A1CF	100	75.249	Capra_hircus
ENSCSEG00000002361	a1cf	94	76.761	ENSTSYG00000001755	A1CF	100	74.648	Carlito_syrichta
ENSCSEG00000002361	a1cf	100	73.538	ENSCAPG00000017386	A1CF	100	72.524	Cavia_aperea
ENSCSEG00000002361	a1cf	100	75.456	ENSCPOG00000009807	A1CF	100	74.129	Cavia_porcellus
ENSCSEG00000002361	a1cf	100	76.080	ENSCCAG00000018168	A1CF	100	74.959	Cebus_capucinus
ENSCSEG00000002361	a1cf	100	74.959	ENSCATG00000043715	A1CF	100	73.632	Cercocebus_atys
ENSCSEG00000002361	a1cf	100	76.033	ENSCLAG00000010424	A1CF	100	74.711	Chinchilla_lanigera
ENSCSEG00000002361	a1cf	100	75.748	ENSCSAG00000007032	A1CF	100	74.627	Chlorocebus_sabaeus
ENSCSEG00000002361	a1cf	95	75.393	ENSCHOG00000009089	A1CF	94	74.346	Choloepus_hoffmanni
ENSCSEG00000002361	a1cf	100	77.944	ENSCPBG00000026464	A1CF	100	76.119	Chrysemys_picta_bellii
ENSCSEG00000002361	a1cf	100	75.914	ENSCANG00000038032	A1CF	100	74.793	Colobus_angolensis_palliatus
ENSCSEG00000002361	a1cf	100	76.285	ENSCGRG00001017413	A1cf	100	74.627	Cricetulus_griseus_chok1gshd
ENSCSEG00000002361	a1cf	100	75.124	ENSCGRG00000017332	A1cf	100	74.461	Cricetulus_griseus_crigri
ENSCSEG00000002361	a1cf	100	84.491	ENSCVAG00000010520	a1cf	100	84.390	Cyprinodon_variegatus
ENSCSEG00000002361	a1cf	100	78.878	ENSDARG00000002968	a1cf	100	78.383	Danio_rerio
ENSCSEG00000002361	a1cf	100	75.788	ENSDNOG00000002829	A1CF	100	74.461	Dasypus_novemcinctus
ENSCSEG00000002361	a1cf	78	86.873	ENSETEG00000012527	A1CF	79	86.873	Echinops_telfairi
ENSCSEG00000002361	a1cf	100	76.325	ENSEASG00005012924	A1CF	100	75.000	Equus_asinus_asinus
ENSCSEG00000002361	a1cf	100	75.788	ENSECAG00000010424	A1CF	100	74.669	Equus_caballus
ENSCSEG00000002361	a1cf	78	66.454	ENSEEUG00000000013	A1CF	97	66.225	Erinaceus_europaeus
ENSCSEG00000002361	a1cf	100	80.033	ENSELUG00000003159	a1cf	100	79.868	Esox_lucius
ENSCSEG00000002361	a1cf	100	74.295	ENSFCAG00000011179	A1CF	100	73.798	Felis_catus
ENSCSEG00000002361	a1cf	100	75.622	ENSFALG00000013183	A1CF	100	73.806	Ficedula_albicollis
ENSCSEG00000002361	a1cf	100	74.461	ENSFDAG00000019371	A1CF	100	73.134	Fukomys_damarensis
ENSCSEG00000002361	a1cf	100	78.675	ENSFHEG00000019652	a1cf	96	86.719	Fundulus_heteroclitus
ENSCSEG00000002361	a1cf	100	76.252	ENSGMOG00000018943	a1cf	100	75.410	Gadus_morhua
ENSCSEG00000002361	a1cf	95	77.336	ENSGALG00000003765	A1CF	96	76.491	Gallus_gallus
ENSCSEG00000002361	a1cf	100	77.578	ENSGAFG00000014868	a1cf	100	77.578	Gambusia_affinis
ENSCSEG00000002361	a1cf	100	84.098	ENSGACG00000010241	a1cf	100	84.262	Gasterosteus_aculeatus
ENSCSEG00000002361	a1cf	96	77.855	ENSGAGG00000016508	A1CF	98	76.298	Gopherus_agassizii
ENSCSEG00000002361	a1cf	100	76.119	ENSGGOG00000009670	A1CF	100	74.793	Gorilla_gorilla
ENSCSEG00000002361	a1cf	100	86.526	ENSHBUG00000021959	a1cf	100	85.877	Haplochromis_burtoni
ENSCSEG00000002361	a1cf	100	76.119	ENSHGLG00000008955	A1CF	100	74.461	Heterocephalus_glaber_female
ENSCSEG00000002361	a1cf	100	75.456	ENSHGLG00100000518	A1CF	100	73.798	Heterocephalus_glaber_male
ENSCSEG00000002361	a1cf	100	74.878	ENSHCOG00000017669	a1cf	100	76.985	Hippocampus_comes
ENSCSEG00000002361	a1cf	88	84.112	ENSIPUG00000010367	a1cf	95	83.738	Ictalurus_punctatus
ENSCSEG00000002361	a1cf	100	84.416	ENSKMAG00000006568	a1cf	100	84.416	Kryptolebias_marmoratus
ENSCSEG00000002361	a1cf	99	85.622	ENSLBEG00000020994	a1cf	99	85.854	Labrus_bergylta
ENSCSEG00000002361	a1cf	100	76.733	ENSLACG00000008061	A1CF	100	75.413	Latimeria_chalumnae
ENSCSEG00000002361	a1cf	100	79.407	ENSLOCG00000006302	a1cf	100	78.254	Lepisosteus_oculatus
ENSCSEG00000002361	a1cf	100	75.415	ENSLAFG00000015462	A1CF	100	75.788	Loxodonta_africana
ENSCSEG00000002361	a1cf	100	74.959	ENSMFAG00000035948	A1CF	100	73.632	Macaca_fascicularis
ENSCSEG00000002361	a1cf	100	74.959	ENSMMUG00000007077	A1CF	100	73.632	Macaca_mulatta
ENSCSEG00000002361	a1cf	100	74.793	ENSMNEG00000031454	A1CF	100	73.466	Macaca_nemestrina
ENSCSEG00000002361	a1cf	100	76.119	ENSMLEG00000037223	A1CF	100	74.793	Mandrillus_leucophaeus
ENSCSEG00000002361	a1cf	100	84.288	ENSMAMG00000010402	a1cf	100	84.615	Mastacembelus_armatus
ENSCSEG00000002361	a1cf	100	86.333	ENSMZEG00005013245	a1cf	100	86.333	Maylandia_zebra
ENSCSEG00000002361	a1cf	100	76.490	ENSMGAG00000001507	A1CF	100	74.507	Meleagris_gallopavo
ENSCSEG00000002361	a1cf	100	75.788	ENSMAUG00000007422	A1cf	100	74.295	Mesocricetus_auratus
ENSCSEG00000002361	a1cf	100	74.215	ENSMICG00000003377	A1CF	100	74.711	Microcebus_murinus
ENSCSEG00000002361	a1cf	100	75.914	ENSMOCG00000021536	A1cf	100	74.585	Microtus_ochrogaster
ENSCSEG00000002361	a1cf	100	74.475	ENSMMOG00000009422	a1cf	100	74.475	Mola_mola
ENSCSEG00000002361	a1cf	88	77.298	ENSMODG00000016478	A1CF	97	77.674	Monodelphis_domestica
ENSCSEG00000002361	a1cf	100	80.602	ENSMALG00000012992	a1cf	100	80.268	Monopterus_albus
ENSCSEG00000002361	a1cf	100	75.622	MGP_CAROLIEiJ_G0022873	A1cf	100	74.295	Mus_caroli
ENSCSEG00000002361	a1cf	100	75.622	ENSMUSG00000052595	A1cf	99	81.271	Mus_musculus
ENSCSEG00000002361	a1cf	100	75.456	MGP_PahariEiJ_G0014366	A1cf	100	73.798	Mus_pahari
ENSCSEG00000002361	a1cf	100	75.456	MGP_SPRETEiJ_G0023792	A1cf	100	74.129	Mus_spretus
ENSCSEG00000002361	a1cf	100	70.647	ENSMPUG00000016971	A1CF	100	69.486	Mustela_putorius_furo
ENSCSEG00000002361	a1cf	100	75.622	ENSMLUG00000016071	A1CF	100	75.124	Myotis_lucifugus
ENSCSEG00000002361	a1cf	100	75.788	ENSNGAG00000015136	A1cf	100	74.295	Nannospalax_galili
ENSCSEG00000002361	a1cf	100	86.688	ENSNBRG00000001712	a1cf	100	86.039	Neolamprologus_brichardi
ENSCSEG00000002361	a1cf	100	76.617	ENSNLEG00000012028	A1CF	100	75.290	Nomascus_leucogenys
ENSCSEG00000002361	a1cf	94	76.274	ENSMEUG00000015909	A1CF	100	75.220	Notamacropus_eugenii
ENSCSEG00000002361	a1cf	88	68.750	ENSOPRG00000010667	A1CF	100	66.545	Ochotona_princeps
ENSCSEG00000002361	a1cf	100	86.364	ENSONIG00000019105	a1cf	100	85.714	Oreochromis_niloticus
ENSCSEG00000002361	a1cf	78	76.221	ENSOANG00000007360	A1CF	99	75.796	Ornithorhynchus_anatinus
ENSCSEG00000002361	a1cf	100	74.585	ENSOCUG00000011587	A1CF	100	73.256	Oryctolagus_cuniculus
ENSCSEG00000002361	a1cf	100	80.614	ENSORLG00000013342	a1cf	100	80.129	Oryzias_latipes
ENSCSEG00000002361	a1cf	100	82.876	ENSORLG00020000586	a1cf	100	82.410	Oryzias_latipes_hni
ENSCSEG00000002361	a1cf	100	82.876	ENSORLG00015018569	a1cf	100	82.410	Oryzias_latipes_hsok
ENSCSEG00000002361	a1cf	100	82.843	ENSOMEG00000013531	a1cf	100	82.843	Oryzias_melastigma
ENSCSEG00000002361	a1cf	100	75.249	ENSOGAG00000012884	A1CF	100	75.954	Otolemur_garnettii
ENSCSEG00000002361	a1cf	100	76.412	ENSOARG00000013695	A1CF	100	75.249	Ovis_aries
ENSCSEG00000002361	a1cf	95	77.233	ENSPPAG00000028115	A1CF	99	78.270	Pan_paniscus
ENSCSEG00000002361	a1cf	100	75.456	ENSPPRG00000012180	A1CF	100	74.959	Panthera_pardus
ENSCSEG00000002361	a1cf	100	75.456	ENSPTIG00000021223	A1CF	100	74.959	Panthera_tigris_altaica
ENSCSEG00000002361	a1cf	100	76.119	ENSPTRG00000002508	A1CF	100	74.793	Pan_troglodytes
ENSCSEG00000002361	a1cf	100	74.959	ENSPANG00000021988	A1CF	100	73.632	Papio_anubis
ENSCSEG00000002361	a1cf	100	80.363	ENSPKIG00000025176	a1cf	100	79.672	Paramormyrops_kingsleyae
ENSCSEG00000002361	a1cf	100	76.451	ENSPSIG00000010318	A1CF	100	74.959	Pelodiscus_sinensis
ENSCSEG00000002361	a1cf	98	70.628	ENSPMGG00000013359	a1cf	99	69.815	Periophthalmus_magnuspinnatus
ENSCSEG00000002361	a1cf	100	76.617	ENSPEMG00000015021	A1cf	100	74.793	Peromyscus_maniculatus_bairdii
ENSCSEG00000002361	a1cf	100	75.124	ENSPCIG00000002175	A1CF	100	75.456	Phascolarctos_cinereus
ENSCSEG00000002361	a1cf	100	86.107	ENSPFOG00000007437	-	100	86.107	Poecilia_formosa
ENSCSEG00000002361	a1cf	100	86.268	ENSPFOG00000006683	a1cf	100	86.016	Poecilia_formosa
ENSCSEG00000002361	a1cf	100	84.814	ENSPLAG00000001210	-	100	84.814	Poecilia_latipinna
ENSCSEG00000002361	a1cf	100	84.814	ENSPLAG00000000026	a1cf	100	84.814	Poecilia_latipinna
ENSCSEG00000002361	a1cf	100	78.990	ENSPMEG00000015529	-	100	78.818	Poecilia_mexicana
ENSCSEG00000002361	a1cf	100	77.687	ENSPMEG00000000921	a1cf	100	77.687	Poecilia_mexicana
ENSCSEG00000002361	a1cf	100	85.945	ENSPREG00000016298	a1cf	100	85.945	Poecilia_reticulata
ENSCSEG00000002361	a1cf	100	75.456	ENSPPYG00000002819	A1CF	100	74.129	Pongo_abelii
ENSCSEG00000002361	a1cf	80	58.384	ENSPCAG00000006463	A1CF	79	58.958	Procavia_capensis
ENSCSEG00000002361	a1cf	100	75.290	ENSPCOG00000024172	A1CF	100	75.622	Propithecus_coquereli
ENSCSEG00000002361	a1cf	100	88.149	ENSPNYG00000017944	a1cf	100	87.500	Pundamilia_nyererei
ENSCSEG00000002361	a1cf	100	81.414	ENSPNAG00000007704	a1cf	100	81.086	Pygocentrus_nattereri
ENSCSEG00000002361	a1cf	100	74.461	ENSRNOG00000033195	A1cf	100	74.129	Rattus_norvegicus
ENSCSEG00000002361	a1cf	100	70.909	ENSRBIG00000042892	A1CF	100	72.780	Rhinopithecus_bieti
ENSCSEG00000002361	a1cf	100	76.119	ENSRROG00000041398	A1CF	100	74.793	Rhinopithecus_roxellana
ENSCSEG00000002361	a1cf	100	76.578	ENSSBOG00000021930	A1CF	100	75.249	Saimiri_boliviensis_boliviensis
ENSCSEG00000002361	a1cf	100	76.285	ENSSHAG00000005096	A1CF	100	74.959	Sarcophilus_harrisii
ENSCSEG00000002361	a1cf	100	79.542	ENSSFOG00015011774	a1cf	100	79.378	Scleropages_formosus
ENSCSEG00000002361	a1cf	100	89.739	ENSSMAG00000013271	a1cf	100	89.088	Scophthalmus_maximus
ENSCSEG00000002361	a1cf	100	89.884	ENSSDUG00000013930	a1cf	100	89.884	Seriola_dumerili
ENSCSEG00000002361	a1cf	100	82.255	ENSSLDG00000004290	a1cf	100	82.285	Seriola_lalandi_dorsalis
ENSCSEG00000002361	a1cf	95	67.776	ENSSARG00000005940	A1CF	95	68.007	Sorex_araneus
ENSCSEG00000002361	a1cf	95	76.132	ENSSPUG00000006797	A1CF	95	75.087	Sphenodon_punctatus
ENSCSEG00000002361	a1cf	100	77.243	ENSSSCG00000010431	A1CF	100	76.080	Sus_scrofa
ENSCSEG00000002361	a1cf	100	77.152	ENSTGUG00000005090	A1CF	100	75.493	Taeniopygia_guttata
ENSCSEG00000002361	a1cf	100	85.161	ENSTRUG00000001982	a1cf	100	85.203	Takifugu_rubripes
ENSCSEG00000002361	a1cf	100	84.863	ENSTNIG00000003580	a1cf	100	84.441	Tetraodon_nigroviridis
ENSCSEG00000002361	a1cf	95	72.154	ENSTTRG00000013190	A1CF	94	71.278	Tursiops_truncatus
ENSCSEG00000002361	a1cf	100	74.793	ENSUAMG00000020065	A1CF	100	73.300	Ursus_americanus
ENSCSEG00000002361	a1cf	100	75.788	ENSUMAG00000011162	A1CF	100	74.461	Ursus_maritimus
ENSCSEG00000002361	a1cf	87	72.624	ENSVPAG00000006130	A1CF	86	71.619	Vicugna_pacos
ENSCSEG00000002361	a1cf	100	74.419	ENSVVUG00000002504	A1CF	100	73.134	Vulpes_vulpes
ENSCSEG00000002361	a1cf	100	70.792	ENSXETG00000006611	a1cf	100	70.297	Xenopus_tropicalis
ENSCSEG00000002361	a1cf	100	84.779	ENSXCOG00000003302	a1cf	100	84.779	Xiphophorus_couchianus
ENSCSEG00000002361	a1cf	100	86.088	ENSXMAG00000016703	a1cf	100	86.088	Xiphophorus_maculatus