EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000002378 (Gene tree)
Gene ID: 103383492
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 4208 bases
Position: chr9:4689860-4694067
Accession: 103383492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000003632	PPR	PF01535.20	1.9e-16	1	2
ENSCSEP00000003632	PPR	PF01535.20	1.9e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000003679	-	3068	XM_008316629	ENSCSEP00000003632	697 (aa)	XP_008314851	UPI0004969589

Gene Model

Click here to download ENSCSEG00000002378's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000002378's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000002378	ptcd1	80	48.305	ENSG00000248919	ATP5MF-PTCD1	78	47.906	Homo_sapiens
ENSCSEG00000002378	ptcd1	80	48.387	ENSG00000106246	PTCD1	84	47.906	Homo_sapiens
ENSCSEG00000002378	ptcd1	88	56.850	ENSAPOG00000010679	ptcd1	96	56.220	Acanthochromis_polyacanthus
ENSCSEG00000002378	ptcd1	82	46.865	ENSAMEG00000006224	-	79	46.865	Ailuropoda_melanoleuca
ENSCSEG00000002378	ptcd1	86	63.875	ENSACIG00000017861	ptcd1	89	63.875	Amphilophus_citrinellus
ENSCSEG00000002378	ptcd1	93	59.031	ENSAOCG00000020741	-	94	58.590	Amphiprion_ocellaris
ENSCSEG00000002378	ptcd1	88	58.009	ENSAOCG00000022617	ptcd1	94	57.543	Amphiprion_ocellaris
ENSCSEG00000002378	ptcd1	93	59.499	ENSAPEG00000022632	ptcd1	94	59.057	Amphiprion_percula
ENSCSEG00000002378	ptcd1	98	59.414	ENSATEG00000007016	ptcd1	98	60.028	Anabas_testudineus
ENSCSEG00000002378	ptcd1	80	49.069	ENSAPLG00000006862	-	91	48.247	Anas_platyrhynchos
ENSCSEG00000002378	ptcd1	86	45.062	ENSACAG00000012871	-	83	44.599	Anolis_carolinensis
ENSCSEG00000002378	ptcd1	83	46.875	ENSANAG00000035790	-	86	47.395	Aotus_nancymaae
ENSCSEG00000002378	ptcd1	99	58.101	ENSACLG00000002824	ptcd1	98	57.961	Astatotilapia_calliptera
ENSCSEG00000002378	ptcd1	82	48.718	ENSAMXG00000037292	ptcd1	87	48.878	Astyanax_mexicanus
ENSCSEG00000002378	ptcd1	88	45.619	ENSBTAG00000020440	-	81	45.619	Bos_taurus
ENSCSEG00000002378	ptcd1	83	47.360	ENSCJAG00000015815	-	89	46.508	Callithrix_jacchus
ENSCSEG00000002378	ptcd1	83	47.565	ENSCAFG00000015055	-	80	46.992	Canis_familiaris
ENSCSEG00000002378	ptcd1	83	47.394	ENSCAFG00020014480	-	80	47.068	Canis_lupus_dingo
ENSCSEG00000002378	ptcd1	89	45.783	ENSCHIG00000027000	-	93	45.482	Capra_hircus
ENSCSEG00000002378	ptcd1	80	47.279	ENSTSYG00000029495	-	84	47.078	Carlito_syrichta
ENSCSEG00000002378	ptcd1	80	45.997	ENSCAPG00000014660	-	90	45.546	Cavia_aperea
ENSCSEG00000002378	ptcd1	80	46.848	ENSCPOG00000001780	-	84	46.387	Cavia_porcellus
ENSCSEG00000002378	ptcd1	83	46.875	ENSCCAG00000034025	-	87	46.667	Cebus_capucinus
ENSCSEG00000002378	ptcd1	80	48.639	ENSCATG00000040859	-	84	48.235	Cercocebus_atys
ENSCSEG00000002378	ptcd1	80	48.810	ENSCLAG00000006354	-	88	46.805	Chinchilla_lanigera
ENSCSEG00000002378	ptcd1	76	47.415	ENSCSAG00000017794	-	83	47.090	Chlorocebus_sabaeus
ENSCSEG00000002378	ptcd1	81	45.820	ENSCPBG00000020866	-	83	45.338	Chrysemys_picta_bellii
ENSCSEG00000002378	ptcd1	82	47.430	ENSCANG00000023441	-	85	47.595	Colobus_angolensis_palliatus
ENSCSEG00000002378	ptcd1	85	46.795	ENSCGRG00001023686	Ptcd1	87	46.154	Cricetulus_griseus_chok1gshd
ENSCSEG00000002378	ptcd1	85	46.795	ENSCGRG00000015031	Ptcd1	87	46.154	Cricetulus_griseus_crigri
ENSCSEG00000002378	ptcd1	96	61.087	ENSCVAG00000015826	ptcd1	95	60.499	Cyprinodon_variegatus
ENSCSEG00000002378	ptcd1	90	62.205	ENSCVAG00000003621	ptcd1	95	61.575	Cyprinodon_variegatus
ENSCSEG00000002378	ptcd1	85	49.120	ENSDARG00000076176	ptcd1	88	49.120	Danio_rerio
ENSCSEG00000002378	ptcd1	84	44.935	ENSDNOG00000009957	-	86	44.839	Dasypus_novemcinctus
ENSCSEG00000002378	ptcd1	80	46.859	ENSDORG00000000740	Ptcd1	86	46.477	Dipodomys_ordii
ENSCSEG00000002378	ptcd1	79	37.876	ENSEBUG00000014515	ptcd1	98	36.878	Eptatretus_burgeri
ENSCSEG00000002378	ptcd1	83	47.059	ENSEASG00005002480	-	90	45.820	Equus_asinus_asinus
ENSCSEG00000002378	ptcd1	83	46.569	ENSECAG00000016617	-	84	47.264	Equus_caballus
ENSCSEG00000002378	ptcd1	88	52.207	ENSELUG00000016517	ptcd1	86	51.524	Esox_lucius
ENSCSEG00000002378	ptcd1	83	46.318	ENSFCAG00000015069	-	86	46.481	Felis_catus
ENSCSEG00000002378	ptcd1	80	46.854	ENSFALG00000013803	-	87	45.101	Ficedula_albicollis
ENSCSEG00000002378	ptcd1	80	48.041	ENSFDAG00000006393	-	84	47.324	Fukomys_damarensis
ENSCSEG00000002378	ptcd1	77	62.568	ENSFHEG00000012491	ptcd1	95	62.568	Fundulus_heteroclitus
ENSCSEG00000002378	ptcd1	81	59.075	ENSGMOG00000007639	ptcd1	93	58.733	Gadus_morhua
ENSCSEG00000002378	ptcd1	87	45.220	ENSGALG00000004711	-	89	44.662	Gallus_gallus
ENSCSEG00000002378	ptcd1	93	59.337	ENSGAFG00000013175	ptcd1	94	59.970	Gambusia_affinis
ENSCSEG00000002378	ptcd1	88	61.830	ENSGACG00000016607	ptcd1	96	61.830	Gasterosteus_aculeatus
ENSCSEG00000002378	ptcd1	78	44.637	ENSGAGG00000021832	-	86	44.020	Gopherus_agassizii
ENSCSEG00000002378	ptcd1	83	47.455	ENSGGOG00000015123	-	84	47.906	Gorilla_gorilla
ENSCSEG00000002378	ptcd1	99	58.554	ENSHBUG00000018275	ptcd1	98	58.240	Haplochromis_burtoni
ENSCSEG00000002378	ptcd1	80	46.769	ENSHGLG00000017621	-	88	45.295	Heterocephalus_glaber_female
ENSCSEG00000002378	ptcd1	80	46.769	ENSHGLG00100007218	-	88	45.295	Heterocephalus_glaber_male
ENSCSEG00000002378	ptcd1	93	54.128	ENSHCOG00000010784	ptcd1	95	54.434	Hippocampus_comes
ENSCSEG00000002378	ptcd1	83	47.947	ENSSTOG00000001682	-	86	47.947	Ictidomys_tridecemlineatus
ENSCSEG00000002378	ptcd1	88	44.822	ENSJJAG00000000319	Ptcd1	92	44.822	Jaculus_jaculus
ENSCSEG00000002378	ptcd1	99	59.857	ENSKMAG00000008708	ptcd1	98	59.857	Kryptolebias_marmoratus
ENSCSEG00000002378	ptcd1	100	55.753	ENSLBEG00000008061	ptcd1	99	56.164	Labrus_bergylta
ENSCSEG00000002378	ptcd1	84	47.173	ENSLACG00000011172	ptcd1	86	46.850	Latimeria_chalumnae
ENSCSEG00000002378	ptcd1	81	52.181	ENSLOCG00000004833	ptcd1	92	51.500	Lepisosteus_oculatus
ENSCSEG00000002378	ptcd1	81	47.306	ENSLAFG00000002588	-	90	45.283	Loxodonta_africana
ENSCSEG00000002378	ptcd1	80	48.639	ENSMFAG00000041324	-	84	48.235	Macaca_fascicularis
ENSCSEG00000002378	ptcd1	84	46.519	ENSMMUG00000030408	-	84	48.067	Macaca_mulatta
ENSCSEG00000002378	ptcd1	80	48.469	ENSMNEG00000043786	-	84	48.067	Macaca_nemestrina
ENSCSEG00000002378	ptcd1	80	36.348	ENSMLEG00000031179	-	81	37.113	Mandrillus_leucophaeus
ENSCSEG00000002378	ptcd1	99	59.046	ENSMAMG00000007623	ptcd1	97	59.187	Mastacembelus_armatus
ENSCSEG00000002378	ptcd1	99	57.997	ENSMZEG00005012722	ptcd1	98	57.682	Maylandia_zebra
ENSCSEG00000002378	ptcd1	79	48.653	ENSMGAG00000004211	-	77	47.987	Meleagris_gallopavo
ENSCSEG00000002378	ptcd1	80	45.486	ENSMICG00000017428	-	87	44.463	Microcebus_murinus
ENSCSEG00000002378	ptcd1	99	58.759	ENSMMOG00000020243	ptcd1	98	58.759	Mola_mola
ENSCSEG00000002378	ptcd1	84	45.268	ENSMODG00000001350	-	84	45.039	Monodelphis_domestica
ENSCSEG00000002378	ptcd1	93	61.481	ENSMALG00000018442	ptcd1	98	59.085	Monopterus_albus
ENSCSEG00000002378	ptcd1	83	46.634	MGP_CAROLIEiJ_G0028011	Ptcd1	87	46.393	Mus_caroli
ENSCSEG00000002378	ptcd1	83	45.990	ENSMUSG00000029624	Ptcd1	87	45.738	Mus_musculus
ENSCSEG00000002378	ptcd1	83	46.141	MGP_PahariEiJ_G0024580	Ptcd1	87	45.813	Mus_pahari
ENSCSEG00000002378	ptcd1	83	46.141	MGP_SPRETEiJ_G0029012	Ptcd1	87	46.066	Mus_spretus
ENSCSEG00000002378	ptcd1	85	46.835	ENSMPUG00000016518	-	86	47.087	Mustela_putorius_furo
ENSCSEG00000002378	ptcd1	80	47.619	ENSMLUG00000010994	-	79	47.659	Myotis_lucifugus
ENSCSEG00000002378	ptcd1	96	57.992	ENSNBRG00000010079	ptcd1	96	59.852	Neolamprologus_brichardi
ENSCSEG00000002378	ptcd1	70	48.560	ENSNLEG00000011060	-	87	48.467	Nomascus_leucogenys
ENSCSEG00000002378	ptcd1	84	45.192	ENSMEUG00000006930	-	88	44.817	Notamacropus_eugenii
ENSCSEG00000002378	ptcd1	71	48.413	ENSOPRG00000013647	-	74	46.032	Ochotona_princeps
ENSCSEG00000002378	ptcd1	84	61.065	ENSONIG00000003168	ptcd1	100	60.899	Oreochromis_niloticus
ENSCSEG00000002378	ptcd1	78	44.845	ENSOANG00000007728	-	75	44.254	Ornithorhynchus_anatinus
ENSCSEG00000002378	ptcd1	80	47.635	ENSOCUG00000010584	-	82	46.656	Oryctolagus_cuniculus
ENSCSEG00000002378	ptcd1	95	59.384	ENSORLG00000009275	ptcd1	99	59.238	Oryzias_latipes
ENSCSEG00000002378	ptcd1	94	59.673	ENSORLG00020000988	ptcd1	97	59.524	Oryzias_latipes_hni
ENSCSEG00000002378	ptcd1	93	60.030	ENSORLG00015010557	ptcd1	97	59.880	Oryzias_latipes_hsok
ENSCSEG00000002378	ptcd1	94	60.987	ENSOMEG00000020627	ptcd1	98	60.837	Oryzias_melastigma
ENSCSEG00000002378	ptcd1	88	44.204	ENSOGAG00000010877	-	91	43.721	Otolemur_garnettii
ENSCSEG00000002378	ptcd1	89	42.285	ENSOARG00000018676	-	94	41.988	Ovis_aries
ENSCSEG00000002378	ptcd1	80	48.229	ENSPPAG00000036024	-	84	47.920	Pan_paniscus
ENSCSEG00000002378	ptcd1	83	46.318	ENSPPRG00000003478	-	87	46.318	Panthera_pardus
ENSCSEG00000002378	ptcd1	85	46.582	ENSPTRG00000019452	-	87	46.384	Pan_troglodytes
ENSCSEG00000002378	ptcd1	80	48.810	ENSPANG00000016730	-	84	48.403	Papio_anubis
ENSCSEG00000002378	ptcd1	84	52.066	ENSPKIG00000014215	ptcd1	87	52.066	Paramormyrops_kingsleyae
ENSCSEG00000002378	ptcd1	80	45.946	ENSPSIG00000011184	-	98	45.194	Pelodiscus_sinensis
ENSCSEG00000002378	ptcd1	69	42.776	ENSPMAG00000009667	ptcd1	100	42.776	Petromyzon_marinus
ENSCSEG00000002378	ptcd1	84	45.369	ENSPCIG00000024778	-	85	45.070	Phascolarctos_cinereus
ENSCSEG00000002378	ptcd1	93	60.301	ENSPFOG00000004458	ptcd1	92	60.511	Poecilia_formosa
ENSCSEG00000002378	ptcd1	93	60.451	ENSPLAG00000011051	ptcd1	92	60.961	Poecilia_latipinna
ENSCSEG00000002378	ptcd1	93	60.661	ENSPMEG00000020547	ptcd1	92	60.511	Poecilia_mexicana
ENSCSEG00000002378	ptcd1	93	59.850	ENSPREG00000000059	ptcd1	92	59.850	Poecilia_reticulata
ENSCSEG00000002378	ptcd1	84	46.527	ENSPPYG00000017377	-	92	46.365	Pongo_abelii
ENSCSEG00000002378	ptcd1	76	47.857	ENSPCAG00000001852	-	85	47.857	Procavia_capensis
ENSCSEG00000002378	ptcd1	83	45.380	ENSPCOG00000018596	-	87	45.366	Propithecus_coquereli
ENSCSEG00000002378	ptcd1	54	52.878	ENSPVAG00000007529	-	51	60.369	Pteropus_vampyrus
ENSCSEG00000002378	ptcd1	99	58.333	ENSPNYG00000019993	ptcd1	98	58.020	Pundamilia_nyererei
ENSCSEG00000002378	ptcd1	84	50.971	ENSPNAG00000014931	ptcd1	92	49.379	Pygocentrus_nattereri
ENSCSEG00000002378	ptcd1	84	46.252	ENSRNOG00000000987	Ptcd1	94	45.579	Rattus_norvegicus
ENSCSEG00000002378	ptcd1	86	46.593	ENSRBIG00000043393	-	86	47.627	Rhinopithecus_bieti
ENSCSEG00000002378	ptcd1	86	46.593	ENSRROG00000036420	-	86	47.627	Rhinopithecus_roxellana
ENSCSEG00000002378	ptcd1	83	47.282	ENSSBOG00000024114	-	87	46.906	Saimiri_boliviensis_boliviensis
ENSCSEG00000002378	ptcd1	91	42.692	ENSSHAG00000011376	-	94	44.866	Sarcophilus_harrisii
ENSCSEG00000002378	ptcd1	80	54.667	ENSSFOG00015007909	ptcd1	80	54.167	Scleropages_formosus
ENSCSEG00000002378	ptcd1	89	63.391	ENSSMAG00000000218	ptcd1	99	63.391	Scophthalmus_maximus
ENSCSEG00000002378	ptcd1	93	62.891	ENSSDUG00000015671	ptcd1	98	62.593	Seriola_dumerili
ENSCSEG00000002378	ptcd1	92	62.687	ENSSLDG00000014261	ptcd1	96	62.388	Seriola_lalandi_dorsalis
ENSCSEG00000002378	ptcd1	88	42.232	ENSSPUG00000003540	-	87	42.451	Sphenodon_punctatus
ENSCSEG00000002378	ptcd1	100	59.557	ENSSPAG00000011049	ptcd1	99	59.557	Stegastes_partitus
ENSCSEG00000002378	ptcd1	84	47.512	ENSSSCG00000007622	-	92	47.512	Sus_scrofa
ENSCSEG00000002378	ptcd1	81	47.871	ENSTGUG00000007563	-	95	47.878	Taeniopygia_guttata
ENSCSEG00000002378	ptcd1	94	58.737	ENSTRUG00000013471	ptcd1	99	56.000	Takifugu_rubripes
ENSCSEG00000002378	ptcd1	93	59.320	ENSTNIG00000008271	ptcd1	97	59.320	Tetraodon_nigroviridis
ENSCSEG00000002378	ptcd1	85	44.914	ENSTBEG00000011021	-	90	44.914	Tupaia_belangeri
ENSCSEG00000002378	ptcd1	89	44.651	ENSTTRG00000003006	-	89	45.048	Tursiops_truncatus
ENSCSEG00000002378	ptcd1	83	46.569	ENSUAMG00000008049	-	86	46.569	Ursus_americanus
ENSCSEG00000002378	ptcd1	83	47.642	ENSVVUG00000008836	-	86	47.317	Vulpes_vulpes
ENSCSEG00000002378	ptcd1	81	48.061	ENSXETG00000009891	ptcd1	85	47.892	Xenopus_tropicalis
ENSCSEG00000002378	ptcd1	94	60.392	ENSXMAG00000015540	ptcd1	93	61.019	Xiphophorus_maculatus