EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000003520 (Gene tree)
Gene ID: 103382449
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 11201 bases
Position: chr8:16169370-16180570
Accession: 103382449
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000005443	Upf2	PF04050.14	2.8e-32	1	1
ENSCSEP00000005443	MIF4G	PF02854.19	2.8e-76	1	3
ENSCSEP00000005443	MIF4G	PF02854.19	2.8e-76	2	3
ENSCSEP00000005443	MIF4G	PF02854.19	2.8e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000005502	UPF2-201	3684	XM_008315256	ENSCSEP00000005443	1227 (aa)	XP_008313478	-

Gene Model

Click here to download ENSCSEG00000003520's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000003520's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000003520	UPF2	91	80.206	ENSG00000151461	UPF2	91	80.723	Homo_sapiens
ENSCSEG00000003520	UPF2	99	85.256	ENSAPOG00000015837	UPF2	99	85.897	Acanthochromis_polyacanthus
ENSCSEG00000003520	UPF2	91	80.567	ENSAMEG00000004586	UPF2	91	81.121	Ailuropoda_melanoleuca
ENSCSEG00000003520	UPF2	99	85.456	ENSACIG00000018078	UPF2	99	85.759	Amphilophus_citrinellus
ENSCSEG00000003520	UPF2	99	86.953	ENSAOCG00000016766	UPF2	99	88.010	Amphiprion_ocellaris
ENSCSEG00000003520	UPF2	99	86.953	ENSAPEG00000019084	UPF2	99	88.010	Amphiprion_percula
ENSCSEG00000003520	UPF2	99	85.243	ENSATEG00000021677	UPF2	99	85.625	Anabas_testudineus
ENSCSEG00000003520	UPF2	99	77.193	ENSAPLG00000010287	UPF2	90	82.146	Anas_platyrhynchos
ENSCSEG00000003520	UPF2	91	80.997	ENSACAG00000009259	UPF2	91	82.022	Anolis_carolinensis
ENSCSEG00000003520	UPF2	91	75.457	ENSANAG00000028451	UPF2	92	76.070	Aotus_nancymaae
ENSCSEG00000003520	UPF2	99	85.400	ENSACLG00000012696	UPF2	99	85.781	Astatotilapia_calliptera
ENSCSEG00000003520	UPF2	99	81.840	ENSAMXG00000013700	UPF2	99	80.031	Astyanax_mexicanus
ENSCSEG00000003520	UPF2	99	77.183	ENSBTAG00000000288	UPF2	99	78.728	Bos_taurus
ENSCSEG00000003520	UPF2	80	79.604	ENSCJAG00000020685	UPF2	91	80.776	Callithrix_jacchus
ENSCSEG00000003520	UPF2	91	80.739	ENSCAFG00000004839	UPF2	91	81.466	Canis_familiaris
ENSCSEG00000003520	UPF2	91	81.524	ENSCAFG00020005882	UPF2	90	81.914	Canis_lupus_dingo
ENSCSEG00000003520	UPF2	91	80.532	ENSCHIG00000020359	UPF2	91	80.981	Capra_hircus
ENSCSEG00000003520	UPF2	99	77.520	ENSTSYG00000000935	UPF2	99	77.492	Carlito_syrichta
ENSCSEG00000003520	UPF2	71	77.427	ENSCAPG00000016658	UPF2	94	71.993	Cavia_aperea
ENSCSEG00000003520	UPF2	80	76.693	ENSCPOG00000008809	UPF2	91	78.756	Cavia_porcellus
ENSCSEG00000003520	UPF2	95	78.306	ENSCCAG00000035991	UPF2	90	80.484	Cebus_capucinus
ENSCSEG00000003520	UPF2	99	77.891	ENSCATG00000032679	UPF2	91	80.723	Cercocebus_atys
ENSCSEG00000003520	UPF2	99	76.972	ENSCLAG00000011434	UPF2	91	80.862	Chinchilla_lanigera
ENSCSEG00000003520	UPF2	99	77.891	ENSCSAG00000013372	UPF2	91	80.723	Chlorocebus_sabaeus
ENSCSEG00000003520	UPF2	76	91.349	ENSCHOG00000000422	UPF2	73	91.206	Choloepus_hoffmanni
ENSCSEG00000003520	UPF2	99	77.172	ENSCPBG00000027823	UPF2	92	81.645	Chrysemys_picta_bellii
ENSCSEG00000003520	UPF2	78	48.662	ENSCSAVG00000007772	-	78	49.612	Ciona_savignyi
ENSCSEG00000003520	UPF2	99	72.684	ENSCANG00000040396	UPF2	91	74.676	Colobus_angolensis_palliatus
ENSCSEG00000003520	UPF2	91	80.189	ENSCGRG00001019347	Upf2	91	80.743	Cricetulus_griseus_chok1gshd
ENSCSEG00000003520	UPF2	91	80.189	ENSCGRG00000017993	Upf2	91	80.743	Cricetulus_griseus_crigri
ENSCSEG00000003520	UPF2	99	85.354	ENSCVAG00000006167	UPF2	100	86.346	Cyprinodon_variegatus
ENSCSEG00000003520	UPF2	71	83.038	ENSDNOG00000018160	UPF2	91	80.776	Dasypus_novemcinctus
ENSCSEG00000003520	UPF2	80	79.861	ENSDORG00000002478	Upf2	91	80.379	Dipodomys_ordii
ENSCSEG00000003520	UPF2	89	35.607	FBgn0029992	Upf2	90	39.474	Drosophila_melanogaster
ENSCSEG00000003520	UPF2	57	89.781	ENSETEG00000011583	-	63	89.781	Echinops_telfairi
ENSCSEG00000003520	UPF2	65	72.848	ENSEBUG00000012448	-	97	67.013	Eptatretus_burgeri
ENSCSEG00000003520	UPF2	99	77.244	ENSEASG00005019274	UPF2	99	78.052	Equus_asinus_asinus
ENSCSEG00000003520	UPF2	99	77.244	ENSECAG00000017022	UPF2	99	77.734	Equus_caballus
ENSCSEG00000003520	UPF2	60	70.014	ENSEEUG00000007819	UPF2	73	74.304	Erinaceus_europaeus
ENSCSEG00000003520	UPF2	99	80.186	ENSELUG00000012014	UPF2	99	81.476	Esox_lucius
ENSCSEG00000003520	UPF2	91	85.792	ENSFCAG00000005785	UPF2	91	81.293	Felis_catus
ENSCSEG00000003520	UPF2	91	81.810	ENSFALG00000001889	UPF2	89	82.241	Ficedula_albicollis
ENSCSEG00000003520	UPF2	80	78.947	ENSFDAG00000014348	UPF2	91	80.623	Fukomys_damarensis
ENSCSEG00000003520	UPF2	99	85.185	ENSFHEG00000009826	UPF2	100	85.692	Fundulus_heteroclitus
ENSCSEG00000003520	UPF2	99	79.291	ENSGALG00000033772	UPF2	99	78.583	Gallus_gallus
ENSCSEG00000003520	UPF2	99	84.483	ENSGAFG00000020867	UPF2	99	85.377	Gambusia_affinis
ENSCSEG00000003520	UPF2	99	84.736	ENSGACG00000001080	UPF2	99	85.020	Gasterosteus_aculeatus
ENSCSEG00000003520	UPF2	91	80.895	ENSGAGG00000002700	UPF2	91	81.417	Gopherus_agassizii
ENSCSEG00000003520	UPF2	91	80.206	ENSGGOG00000001479	UPF2	91	80.723	Gorilla_gorilla
ENSCSEG00000003520	UPF2	99	85.456	ENSHBUG00000004249	UPF2	99	85.759	Haplochromis_burtoni
ENSCSEG00000003520	UPF2	91	71.662	ENSHGLG00000003822	-	90	71.478	Heterocephalus_glaber_female
ENSCSEG00000003520	UPF2	71	82.816	ENSHGLG00000015176	-	91	80.517	Heterocephalus_glaber_female
ENSCSEG00000003520	UPF2	68	82.924	ENSHGLG00100010036	UPF2	89	80.394	Heterocephalus_glaber_male
ENSCSEG00000003520	UPF2	99	82.889	ENSHCOG00000004025	UPF2	99	82.527	Hippocampus_comes
ENSCSEG00000003520	UPF2	99	78.387	ENSIPUG00000015524	UPF2	99	81.128	Ictalurus_punctatus
ENSCSEG00000003520	UPF2	71	83.259	ENSSTOG00000013075	UPF2	91	81.018	Ictidomys_tridecemlineatus
ENSCSEG00000003520	UPF2	91	79.931	ENSJJAG00000004913	Upf2	91	80.294	Jaculus_jaculus
ENSCSEG00000003520	UPF2	99	84.791	ENSKMAG00000001071	UPF2	100	85.185	Kryptolebias_marmoratus
ENSCSEG00000003520	UPF2	80	85.714	ENSLBEG00000000728	-	92	86.508	Labrus_bergylta
ENSCSEG00000003520	UPF2	99	86.458	ENSLBEG00000016394	-	99	87.099	Labrus_bergylta
ENSCSEG00000003520	UPF2	91	72.571	ENSLACG00000015945	UPF2	99	72.153	Latimeria_chalumnae
ENSCSEG00000003520	UPF2	99	80.187	ENSLOCG00000015698	UPF2	95	90.000	Lepisosteus_oculatus
ENSCSEG00000003520	UPF2	99	77.891	ENSMFAG00000043865	UPF2	91	80.723	Macaca_fascicularis
ENSCSEG00000003520	UPF2	99	77.891	ENSMMUG00000008241	UPF2	91	80.723	Macaca_mulatta
ENSCSEG00000003520	UPF2	80	79.782	ENSMNEG00000008062	UPF2	87	83.389	Macaca_nemestrina
ENSCSEG00000003520	UPF2	99	71.125	ENSMLEG00000036120	UPF2	91	77.461	Mandrillus_leucophaeus
ENSCSEG00000003520	UPF2	99	87.920	ENSMAMG00000018276	UPF2	99	87.500	Mastacembelus_armatus
ENSCSEG00000003520	UPF2	99	85.400	ENSMZEG00005021595	UPF2	99	85.781	Maylandia_zebra
ENSCSEG00000003520	UPF2	99	79.256	ENSMGAG00000004573	UPF2	91	82.189	Meleagris_gallopavo
ENSCSEG00000003520	UPF2	91	77.864	ENSMAUG00000016512	Upf2	91	78.411	Mesocricetus_auratus
ENSCSEG00000003520	UPF2	99	78.703	ENSMICG00000001716	UPF2	90	81.069	Microcebus_murinus
ENSCSEG00000003520	UPF2	80	78.507	ENSMOCG00000008263	Upf2	99	77.305	Microtus_ochrogaster
ENSCSEG00000003520	UPF2	99	86.897	ENSMMOG00000006528	UPF2	91	88.899	Mola_mola
ENSCSEG00000003520	UPF2	71	84.035	ENSMODG00000016794	UPF2	91	81.552	Monodelphis_domestica
ENSCSEG00000003520	UPF2	99	85.816	ENSMALG00000002663	UPF2	99	86.846	Monopterus_albus
ENSCSEG00000003520	UPF2	99	77.839	MGP_CAROLIEiJ_G0023157	Upf2	99	80.645	Mus_caroli
ENSCSEG00000003520	UPF2	80	79.742	ENSMUSG00000043241	Upf2	99	80.340	Mus_musculus
ENSCSEG00000003520	UPF2	99	78.155	MGP_PahariEiJ_G0019217	Upf2	100	80.114	Mus_pahari
ENSCSEG00000003520	UPF2	99	78.312	MGP_SPRETEiJ_G0024075	Upf2	100	80.340	Mus_spretus
ENSCSEG00000003520	UPF2	91	80.567	ENSMPUG00000001064	UPF2	91	81.121	Mustela_putorius_furo
ENSCSEG00000003520	UPF2	91	80.446	ENSMLUG00000000228	UPF2	91	80.895	Myotis_lucifugus
ENSCSEG00000003520	UPF2	99	85.479	ENSNBRG00000013629	UPF2	99	85.781	Neolamprologus_brichardi
ENSCSEG00000003520	UPF2	99	77.813	ENSNLEG00000012058	UPF2	91	80.637	Nomascus_leucogenys
ENSCSEG00000003520	UPF2	71	92.254	ENSOPRG00000006801	-	73	92.254	Ochotona_princeps
ENSCSEG00000003520	UPF2	91	80.498	ENSODEG00000001290	UPF2	91	80.985	Octodon_degus
ENSCSEG00000003520	UPF2	99	85.322	ENSONIG00000017991	UPF2	99	85.625	Oreochromis_niloticus
ENSCSEG00000003520	UPF2	91	80.240	ENSOCUG00000006230	UPF2	91	81.245	Oryctolagus_cuniculus
ENSCSEG00000003520	UPF2	99	84.119	ENSORLG00000017189	UPF2	99	83.725	Oryzias_latipes
ENSCSEG00000003520	UPF2	99	84.119	ENSORLG00020005969	UPF2	99	83.725	Oryzias_latipes_hni
ENSCSEG00000003520	UPF2	99	84.119	ENSORLG00015005713	UPF2	99	83.725	Oryzias_latipes_hsok
ENSCSEG00000003520	UPF2	99	80.221	ENSOMEG00000023420	UPF2	97	81.020	Oryzias_melastigma
ENSCSEG00000003520	UPF2	99	78.031	ENSOGAG00000005796	UPF2	91	80.776	Otolemur_garnettii
ENSCSEG00000003520	UPF2	71	83.278	ENSOARG00000014587	UPF2	91	80.756	Ovis_aries
ENSCSEG00000003520	UPF2	72	82.210	ENSPPAG00000037953	UPF2	91	77.778	Pan_paniscus
ENSCSEG00000003520	UPF2	91	80.429	ENSPPRG00000000690	UPF2	91	81.293	Panthera_pardus
ENSCSEG00000003520	UPF2	91	80.429	ENSPTIG00000008867	UPF2	91	81.293	Panthera_tigris_altaica
ENSCSEG00000003520	UPF2	91	80.206	ENSPTRG00000002291	UPF2	91	80.723	Pan_troglodytes
ENSCSEG00000003520	UPF2	99	77.891	ENSPANG00000023399	UPF2	91	80.862	Papio_anubis
ENSCSEG00000003520	UPF2	99	79.505	ENSPKIG00000025502	UPF2	99	80.314	Paramormyrops_kingsleyae
ENSCSEG00000003520	UPF2	50	81.960	ENSPSIG00000015158	UPF2	81	82.889	Pelodiscus_sinensis
ENSCSEG00000003520	UPF2	99	84.029	ENSPMGG00000005259	UPF2	99	84.350	Periophthalmus_magnuspinnatus
ENSCSEG00000003520	UPF2	84	84.188	ENSPEMG00000015731	Upf2	89	85.463	Peromyscus_maniculatus_bairdii
ENSCSEG00000003520	UPF2	71	84.246	ENSPCIG00000006656	UPF2	91	80.617	Phascolarctos_cinereus
ENSCSEG00000003520	UPF2	99	84.875	ENSPFOG00000017118	UPF2	99	85.456	Poecilia_formosa
ENSCSEG00000003520	UPF2	99	84.953	ENSPLAG00000005094	UPF2	99	85.535	Poecilia_latipinna
ENSCSEG00000003520	UPF2	99	84.953	ENSPMEG00000017009	UPF2	99	85.535	Poecilia_mexicana
ENSCSEG00000003520	UPF2	99	85.397	ENSPREG00000021880	UPF2	99	85.714	Poecilia_reticulata
ENSCSEG00000003520	UPF2	65	78.401	ENSPPYG00000002089	-	100	78.529	Pongo_abelii
ENSCSEG00000003520	UPF2	85	71.127	ENSPCAG00000000684	UPF2	86	71.311	Procavia_capensis
ENSCSEG00000003520	UPF2	80	80.556	ENSPCOG00000021656	UPF2	91	80.509	Propithecus_coquereli
ENSCSEG00000003520	UPF2	91	73.820	ENSPVAG00000017286	UPF2	91	73.988	Pteropus_vampyrus
ENSCSEG00000003520	UPF2	99	82.862	ENSPNYG00000017096	UPF2	99	83.177	Pundamilia_nyererei
ENSCSEG00000003520	UPF2	99	80.870	ENSPNAG00000009357	UPF2	99	81.344	Pygocentrus_nattereri
ENSCSEG00000003520	UPF2	71	82.724	ENSRNOG00000023593	Upf2	100	95.556	Rattus_norvegicus
ENSCSEG00000003520	UPF2	99	76.953	ENSRBIG00000037780	UPF2	91	79.655	Rhinopithecus_bieti
ENSCSEG00000003520	UPF2	99	77.795	ENSRROG00000043547	UPF2	91	80.637	Rhinopithecus_roxellana
ENSCSEG00000003520	UPF2	99	77.662	ENSSBOG00000020012	UPF2	91	80.879	Saimiri_boliviensis_boliviensis
ENSCSEG00000003520	UPF2	99	78.885	ENSSFOG00015023788	upf2	99	79.062	Scleropages_formosus
ENSCSEG00000003520	UPF2	90	83.507	ENSSMAG00000007637	UPF2	99	83.891	Scophthalmus_maximus
ENSCSEG00000003520	UPF2	99	88.221	ENSSDUG00000017244	UPF2	99	88.782	Seriola_dumerili
ENSCSEG00000003520	UPF2	99	88.542	ENSSLDG00000016866	UPF2	99	89.103	Seriola_lalandi_dorsalis
ENSCSEG00000003520	UPF2	99	75.808	ENSSARG00000008615	UPF2	91	80.000	Sorex_araneus
ENSCSEG00000003520	UPF2	91	80.210	ENSSPUG00000014544	UPF2	89	80.475	Sphenodon_punctatus
ENSCSEG00000003520	UPF2	67	78.456	ENSSSCG00000011117	-	99	78.923	Sus_scrofa
ENSCSEG00000003520	UPF2	90	81.196	ENSTGUG00000002163	-	91	82.149	Taeniopygia_guttata
ENSCSEG00000003520	UPF2	99	83.881	ENSTRUG00000007519	UPF2	99	83.112	Takifugu_rubripes
ENSCSEG00000003520	UPF2	99	80.760	ENSTNIG00000004453	UPF2	99	81.406	Tetraodon_nigroviridis
ENSCSEG00000003520	UPF2	92	69.270	ENSTBEG00000012679	UPF2	84	72.052	Tupaia_belangeri
ENSCSEG00000003520	UPF2	99	76.972	ENSTTRG00000016388	UPF2	99	77.341	Tursiops_truncatus
ENSCSEG00000003520	UPF2	92	85.616	ENSUAMG00000023560	UPF2	95	85.235	Ursus_americanus
ENSCSEG00000003520	UPF2	91	80.567	ENSUMAG00000012953	UPF2	86	80.809	Ursus_maritimus
ENSCSEG00000003520	UPF2	82	96.774	ENSVPAG00000006763	UPF2	73	96.774	Vicugna_pacos
ENSCSEG00000003520	UPF2	91	80.739	ENSVVUG00000006166	UPF2	91	81.466	Vulpes_vulpes
ENSCSEG00000003520	UPF2	98	74.822	ENSXETG00000033103	UPF2	70	84.607	Xenopus_tropicalis
ENSCSEG00000003520	UPF2	99	84.404	ENSXCOG00000011604	UPF2	99	85.512	Xiphophorus_couchianus
ENSCSEG00000003520	UPF2	99	84.796	ENSXMAG00000017209	UPF2	99	85.613	Xiphophorus_maculatus