EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000003525 (Gene tree)
Gene ID: 103390641
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 2332 bases
Position: chr15:3776539-3778870
Accession: 103390641
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000005439	Gar1	PF04410.14	2.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000005498	-	1619	XM_008326567	ENSCSEP00000005439	222 (aa)	XP_008324789	UPI000497E468

Gene Model

Click here to download ENSCSEG00000003525's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000003525's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000003525	gar1	66	74.590	ENSCHIG00000011049	-	54	80.374	Capra_hircus
ENSCSEG00000003525	gar1	50	91.818	ENSCHIG00000016026	-	51	93.458	Capra_hircus
ENSCSEG00000003525	gar1	65	84.828	ENSCPOG00000004216	GAR1	60	90.299	Cavia_porcellus
ENSCSEG00000003525	gar1	50	91.818	ENSCATG00000021854	GAR1	54	93.458	Cercocebus_atys
ENSCSEG00000003525	gar1	50	90.909	ENSCLAG00000005335	GAR1	69	94.545	Chinchilla_lanigera
ENSCSEG00000003525	gar1	50	92.727	ENSEASG00005004658	GAR1	50	94.393	Equus_asinus_asinus
ENSCSEG00000003525	gar1	50	91.818	ENSECAG00000013624	GAR1	54	93.458	Equus_caballus
ENSCSEG00000003525	gar1	67	50.000	ENSFCAG00000025841	-	50	59.813	Felis_catus
ENSCSEG00000003525	gar1	50	95.495	ENSFHEG00000008068	gar1	50	95.370	Fundulus_heteroclitus
ENSCSEG00000003525	gar1	50	94.545	ENSIPUG00000003194	gar1	51	94.444	Ictalurus_punctatus
ENSCSEG00000003525	gar1	50	93.694	ENSKMAG00000010402	gar1	51	94.444	Kryptolebias_marmoratus
ENSCSEG00000003525	gar1	60	93.233	ENSMMOG00000004156	gar1	53	96.296	Mola_mola
ENSCSEG00000003525	gar1	51	86.842	ENSMODG00000005897	GAR1	81	90.991	Monodelphis_domestica
ENSCSEG00000003525	gar1	50	91.818	ENSMUSG00000028010	Gar1	70	96.364	Mus_musculus
ENSCSEG00000003525	gar1	50	91.818	MGP_PahariEiJ_G0027076	Gar1	70	96.364	Mus_pahari
ENSCSEG00000003525	gar1	50	91.818	MGP_SPRETEiJ_G0026580	Gar1	70	96.364	Mus_spretus
ENSCSEG00000003525	gar1	50	91.818	ENSNGAG00000008268	Gar1	71	94.545	Nannospalax_galili
ENSCSEG00000003525	gar1	50	91.818	ENSNLEG00000016578	GAR1	50	93.458	Nomascus_leucogenys
ENSCSEG00000003525	gar1	79	92.973	ENSORLG00015017643	gar1	65	92.973	Oryzias_latipes_hsok
ENSCSEG00000003525	gar1	73	62.112	ENSPTRG00000049340	-	51	75.701	Pan_troglodytes
ENSCSEG00000003525	gar1	50	91.818	ENSPTRG00000016364	GAR1	54	93.458	Pan_troglodytes
ENSCSEG00000003525	gar1	51	86.842	ENSPCIG00000018912	GAR1	81	90.991	Phascolarctos_cinereus
ENSCSEG00000003525	gar1	51	93.860	ENSRNOG00000061146	Gar1	63	94.393	Rattus_norvegicus
ENSCSEG00000003525	gar1	62	71.739	ENSRBIG00000042411	-	52	76.636	Rhinopithecus_bieti
ENSCSEG00000003525	gar1	50	91.818	ENSRROG00000028454	GAR1	54	93.458	Rhinopithecus_roxellana
ENSCSEG00000003525	gar1	62	71.739	ENSRROG00000044348	-	62	74.419	Rhinopithecus_roxellana
ENSCSEG00000003525	gar1	50	91.818	ENSSSCG00000009137	GAR1	53	93.458	Sus_scrofa