EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000003850 (Gene tree)
Gene ID: 103387121
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 39218 bases
Position: chr12:5356524-5395741
Accession: 103387121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000006002	PPR	PF01535.20	9.9e-24	1	3
ENSCSEP00000006002	PPR	PF01535.20	9.9e-24	2	3
ENSCSEP00000006002	PPR	PF01535.20	9.9e-24	3	3
ENSCSEP00000006016	PPR	PF01535.20	6.9e-15	1	2
ENSCSEP00000006016	PPR	PF01535.20	6.9e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000006067	-	4146	XM_008321636	ENSCSEP00000006002	1381 (aa)	XP_008319858	-
ENSCSET00000006081	-	1476	-	ENSCSEP00000006016	491 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000003850's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000003850's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000003850	lrpprc	96	58.984	ENSAPOG00000016610	lrpprc	100	52.315	Acanthochromis_polyacanthus
ENSCSEG00000003850	lrpprc	92	50.740	ENSAMEG00000005852	LRPPRC	99	41.571	Ailuropoda_melanoleuca
ENSCSEG00000003850	lrpprc	96	59.961	ENSACIG00000009604	lrpprc	99	53.757	Amphilophus_citrinellus
ENSCSEG00000003850	lrpprc	96	58.789	ENSAOCG00000005886	lrpprc	100	51.586	Amphiprion_ocellaris
ENSCSEG00000003850	lrpprc	96	61.523	ENSAPEG00000002937	lrpprc	99	50.282	Amphiprion_percula
ENSCSEG00000003850	lrpprc	97	59.063	ENSATEG00000010555	lrpprc	96	59.603	Anabas_testudineus
ENSCSEG00000003850	lrpprc	84	54.824	ENSACAG00000029278	LRPPRC	99	43.303	Anolis_carolinensis
ENSCSEG00000003850	lrpprc	96	50.200	ENSANAG00000027440	LRPPRC	93	50.200	Aotus_nancymaae
ENSCSEG00000003850	lrpprc	91	60.759	ENSACLG00000023712	lrpprc	92	62.039	Astatotilapia_calliptera
ENSCSEG00000003850	lrpprc	97	55.758	ENSAMXG00000004245	-	95	55.758	Astyanax_mexicanus
ENSCSEG00000003850	lrpprc	86	53.409	ENSCJAG00000000794	LRPPRC	93	48.062	Callithrix_jacchus
ENSCSEG00000003850	lrpprc	96	49.109	ENSCHIG00000020173	LRPPRC	99	41.888	Capra_hircus
ENSCSEG00000003850	lrpprc	87	47.775	ENSCAPG00000013631	LRPPRC	99	37.262	Cavia_aperea
ENSCSEG00000003850	lrpprc	82	40.016	ENSCPOG00000000204	LRPPRC	99	40.016	Cavia_porcellus
ENSCSEG00000003850	lrpprc	96	50.800	ENSCCAG00000031900	LRPPRC	93	50.800	Cebus_capucinus
ENSCSEG00000003850	lrpprc	96	49.400	ENSCATG00000014187	LRPPRC	93	50.000	Cercocebus_atys
ENSCSEG00000003850	lrpprc	96	47.937	ENSCLAG00000005203	LRPPRC	99	41.205	Chinchilla_lanigera
ENSCSEG00000003850	lrpprc	96	48.800	ENSCSAG00000013233	LRPPRC	99	41.382	Chlorocebus_sabaeus
ENSCSEG00000003850	lrpprc	95	47.082	ENSCHOG00000003631	LRPPRC	84	41.196	Choloepus_hoffmanni
ENSCSEG00000003850	lrpprc	91	41.998	ENSCANG00000034961	LRPPRC	99	58.442	Colobus_angolensis_palliatus
ENSCSEG00000003850	lrpprc	96	48.096	ENSCGRG00001016261	Lrpprc	99	41.503	Cricetulus_griseus_chok1gshd
ENSCSEG00000003850	lrpprc	96	48.096	ENSCGRG00000004072	Lrpprc	99	41.503	Cricetulus_griseus_crigri
ENSCSEG00000003850	lrpprc	96	58.090	ENSCVAG00000012967	lrpprc	99	52.441	Cyprinodon_variegatus
ENSCSEG00000003850	lrpprc	96	51.445	ENSDARG00000043970	lrpprc	98	46.625	Danio_rerio
ENSCSEG00000003850	lrpprc	96	41.975	ENSDNOG00000032336	-	100	34.240	Dasypus_novemcinctus
ENSCSEG00000003850	lrpprc	96	47.705	ENSDNOG00000012594	-	99	41.638	Dasypus_novemcinctus
ENSCSEG00000003850	lrpprc	83	53.207	ENSDORG00000012233	Lrpprc	99	42.230	Dipodomys_ordii
ENSCSEG00000003850	lrpprc	96	48.907	ENSETEG00000006657	LRPPRC	99	41.049	Echinops_telfairi
ENSCSEG00000003850	lrpprc	88	45.618	ENSEEUG00000012340	LRPPRC	81	41.226	Erinaceus_europaeus
ENSCSEG00000003850	lrpprc	92	47.833	ENSELUG00000012803	lrpprc	99	48.103	Esox_lucius
ENSCSEG00000003850	lrpprc	96	50.299	ENSFCAG00000013468	LRPPRC	99	42.837	Felis_catus
ENSCSEG00000003850	lrpprc	83	52.370	ENSFALG00000012738	LRPPRC	97	40.738	Ficedula_albicollis
ENSCSEG00000003850	lrpprc	94	47.600	ENSFDAG00000015328	LRPPRC	99	40.014	Fukomys_damarensis
ENSCSEG00000003850	lrpprc	96	58.203	ENSFHEG00000019604	lrpprc	99	52.228	Fundulus_heteroclitus
ENSCSEG00000003850	lrpprc	96	57.787	ENSGMOG00000008337	lrpprc	99	48.929	Gadus_morhua
ENSCSEG00000003850	lrpprc	96	59.375	ENSGAFG00000001455	lrpprc	99	51.989	Gambusia_affinis
ENSCSEG00000003850	lrpprc	96	62.097	ENSGACG00000010679	lrpprc	99	53.221	Gasterosteus_aculeatus
ENSCSEG00000003850	lrpprc	78	54.478	ENSGGOG00000041704	-	98	54.478	Gorilla_gorilla
ENSCSEG00000003850	lrpprc	96	60.234	ENSHBUG00000000393	lrpprc	99	53.465	Haplochromis_burtoni
ENSCSEG00000003850	lrpprc	96	46.733	ENSHGLG00000006123	LRPPRC	99	40.042	Heterocephalus_glaber_female
ENSCSEG00000003850	lrpprc	56	40.000	ENSHGLG00100005960	-	98	40.000	Heterocephalus_glaber_male
ENSCSEG00000003850	lrpprc	96	57.617	ENSHCOG00000002107	lrpprc	100	51.897	Hippocampus_comes
ENSCSEG00000003850	lrpprc	86	58.409	ENSIPUG00000009406	lrpprc	98	47.934	Ictalurus_punctatus
ENSCSEG00000003850	lrpprc	96	49.304	ENSSTOG00000011185	LRPPRC	99	41.929	Ictidomys_tridecemlineatus
ENSCSEG00000003850	lrpprc	96	47.485	ENSJJAG00000020475	Lrpprc	99	41.218	Jaculus_jaculus
ENSCSEG00000003850	lrpprc	92	54.082	ENSKMAG00000003287	lrpprc	85	48.549	Kryptolebias_marmoratus
ENSCSEG00000003850	lrpprc	97	59.063	ENSLBEG00000023225	lrpprc	96	59.063	Labrus_bergylta
ENSCSEG00000003850	lrpprc	96	50.781	ENSLACG00000014030	LRPPRC	99	44.749	Latimeria_chalumnae
ENSCSEG00000003850	lrpprc	98	54.717	ENSLOCG00000016390	lrpprc	98	47.447	Lepisosteus_oculatus
ENSCSEG00000003850	lrpprc	96	48.024	ENSLAFG00000008614	LRPPRC	99	40.209	Loxodonta_africana
ENSCSEG00000003850	lrpprc	96	49.200	ENSMFAG00000041560	LRPPRC	99	50.357	Macaca_fascicularis
ENSCSEG00000003850	lrpprc	86	52.262	ENSMMUG00000019841	LRPPRC	99	50.000	Macaca_mulatta
ENSCSEG00000003850	lrpprc	96	49.200	ENSMNEG00000031613	LRPPRC	93	49.800	Macaca_nemestrina
ENSCSEG00000003850	lrpprc	97	60.121	ENSMAMG00000021835	lrpprc	98	50.610	Mastacembelus_armatus
ENSCSEG00000003850	lrpprc	96	60.234	ENSMZEG00005027379	lrpprc	100	53.677	Maylandia_zebra
ENSCSEG00000003850	lrpprc	96	49.699	ENSMAUG00000012118	Lrpprc	99	42.708	Mesocricetus_auratus
ENSCSEG00000003850	lrpprc	96	49.501	ENSMICG00000010486	LRPPRC	93	49.501	Microcebus_murinus
ENSCSEG00000003850	lrpprc	96	49.501	ENSMOCG00000006048	Lrpprc	99	41.956	Microtus_ochrogaster
ENSCSEG00000003850	lrpprc	98	59.109	ENSMMOG00000007830	lrpprc	95	59.109	Mola_mola
ENSCSEG00000003850	lrpprc	86	52.847	ENSMODG00000000648	LRPPRC	99	41.250	Monodelphis_domestica
ENSCSEG00000003850	lrpprc	96	58.203	ENSMALG00000001271	lrpprc	100	53.411	Monopterus_albus
ENSCSEG00000003850	lrpprc	96	50.000	ENSMPUG00000011800	LRPPRC	99	43.054	Mustela_putorius_furo
ENSCSEG00000003850	lrpprc	96	48.617	ENSMLUG00000010575	LRPPRC	99	41.226	Myotis_lucifugus
ENSCSEG00000003850	lrpprc	96	48.919	ENSNGAG00000013069	Lrpprc	99	41.585	Nannospalax_galili
ENSCSEG00000003850	lrpprc	89	62.611	ENSNBRG00000013202	lrpprc	92	62.611	Neolamprologus_brichardi
ENSCSEG00000003850	lrpprc	96	50.400	ENSNLEG00000016782	LRPPRC	93	50.400	Nomascus_leucogenys
ENSCSEG00000003850	lrpprc	78	50.220	ENSOPRG00000016774	LRPPRC	83	50.220	Ochotona_princeps
ENSCSEG00000003850	lrpprc	96	41.772	ENSODEG00000011211	LRPPRC	99	41.696	Octodon_degus
ENSCSEG00000003850	lrpprc	96	61.155	ENSONIG00000000917	lrpprc	99	53.506	Oreochromis_niloticus
ENSCSEG00000003850	lrpprc	72	41.545	ENSOANG00000014670	-	92	42.006	Ornithorhynchus_anatinus
ENSCSEG00000003850	lrpprc	96	50.398	ENSOCUG00000015046	LRPPRC	95	42.907	Oryctolagus_cuniculus
ENSCSEG00000003850	lrpprc	96	59.136	ENSORLG00000004605	lrpprc	99	50.828	Oryzias_latipes
ENSCSEG00000003850	lrpprc	88	52.243	ENSORLG00020012536	lrpprc	99	51.456	Oryzias_latipes_hni
ENSCSEG00000003850	lrpprc	97	60.000	ENSORLG00015018270	lrpprc	92	60.208	Oryzias_latipes_hsok
ENSCSEG00000003850	lrpprc	97	60.282	ENSOMEG00000011863	-	97	60.282	Oryzias_melastigma
ENSCSEG00000003850	lrpprc	96	49.900	ENSOGAG00000012798	LRPPRC	99	41.317	Otolemur_garnettii
ENSCSEG00000003850	lrpprc	83	52.732	ENSOARG00000006522	LRPPRC	99	41.603	Ovis_aries
ENSCSEG00000003850	lrpprc	96	50.100	ENSPPAG00000040876	LRPPRC	93	50.699	Pan_paniscus
ENSCSEG00000003850	lrpprc	96	50.299	ENSPPRG00000006578	LRPPRC	99	42.628	Panthera_pardus
ENSCSEG00000003850	lrpprc	85	53.596	ENSPTIG00000000933	LRPPRC	96	43.170	Panthera_tigris_altaica
ENSCSEG00000003850	lrpprc	96	49.800	ENSPTRG00000011880	LRPPRC	93	50.400	Pan_troglodytes
ENSCSEG00000003850	lrpprc	96	49.000	ENSPANG00000020731	LRPPRC	93	49.600	Papio_anubis
ENSCSEG00000003850	lrpprc	97	49.501	ENSPKIG00000022232	lrpprc	97	49.501	Paramormyrops_kingsleyae
ENSCSEG00000003850	lrpprc	57	41.531	ENSPSIG00000006830	-	98	41.879	Pelodiscus_sinensis
ENSCSEG00000003850	lrpprc	64	48.617	ENSPMGG00000016597	lrpprc	99	48.617	Periophthalmus_magnuspinnatus
ENSCSEG00000003850	lrpprc	90	59.402	ENSPMGG00000013171	-	96	59.402	Periophthalmus_magnuspinnatus
ENSCSEG00000003850	lrpprc	82	50.835	ENSPMAG00000002147	lrpprc	99	38.323	Petromyzon_marinus
ENSCSEG00000003850	lrpprc	96	57.422	ENSPFOG00000011227	lrpprc	99	50.420	Poecilia_formosa
ENSCSEG00000003850	lrpprc	96	57.227	ENSPLAG00000004018	lrpprc	99	50.280	Poecilia_latipinna
ENSCSEG00000003850	lrpprc	96	57.812	ENSPMEG00000016425	lrpprc	99	50.559	Poecilia_mexicana
ENSCSEG00000003850	lrpprc	96	57.227	ENSPREG00000003662	lrpprc	99	49.895	Poecilia_reticulata
ENSCSEG00000003850	lrpprc	55	40.709	ENSPPYG00000029532	-	100	40.709	Pongo_abelii
ENSCSEG00000003850	lrpprc	96	47.904	ENSPCAG00000001430	LRPPRC	78	45.992	Procavia_capensis
ENSCSEG00000003850	lrpprc	85	52.204	ENSPVAG00000002007	LRPPRC	99	40.042	Pteropus_vampyrus
ENSCSEG00000003850	lrpprc	96	61.837	ENSPNYG00000000756	lrpprc	91	61.002	Pundamilia_nyererei
ENSCSEG00000003850	lrpprc	96	54.951	ENSPNAG00000002895	lrpprc	99	48.999	Pygocentrus_nattereri
ENSCSEG00000003850	lrpprc	83	52.983	ENSRNOG00000005877	Lrpprc	96	42.382	Rattus_norvegicus
ENSCSEG00000003850	lrpprc	96	48.800	ENSRBIG00000031552	LRPPRC	99	40.334	Rhinopithecus_bieti
ENSCSEG00000003850	lrpprc	96	49.000	ENSRROG00000042793	-	93	49.600	Rhinopithecus_roxellana
ENSCSEG00000003850	lrpprc	96	50.000	ENSSBOG00000011807	LRPPRC	93	50.000	Saimiri_boliviensis_boliviensis
ENSCSEG00000003850	lrpprc	85	51.034	ENSSHAG00000018725	LRPPRC	99	41.194	Sarcophilus_harrisii
ENSCSEG00000003850	lrpprc	96	49.608	ENSSFOG00015001042	lrpprc	99	44.027	Scleropages_formosus
ENSCSEG00000003850	lrpprc	98	60.861	ENSSMAG00000016811	-	100	60.861	Scophthalmus_maximus
ENSCSEG00000003850	lrpprc	96	59.020	ENSSDUG00000019062	lrpprc	99	53.611	Seriola_dumerili
ENSCSEG00000003850	lrpprc	96	50.369	ENSSLDG00000023028	lrpprc	99	50.515	Seriola_lalandi_dorsalis
ENSCSEG00000003850	lrpprc	86	42.964	ENSSARG00000000426	LRPPRC	99	42.964	Sorex_araneus
ENSCSEG00000003850	lrpprc	96	54.688	ENSSPAG00000000162	lrpprc	100	47.678	Stegastes_partitus
ENSCSEG00000003850	lrpprc	96	49.602	ENSSSCG00000008452	LRPPRC	99	42.405	Sus_scrofa
ENSCSEG00000003850	lrpprc	83	52.143	ENSTGUG00000003759	LRPPRC	99	39.641	Taeniopygia_guttata
ENSCSEG00000003850	lrpprc	96	58.008	ENSTRUG00000008409	lrpprc	97	51.405	Takifugu_rubripes
ENSCSEG00000003850	lrpprc	96	55.131	ENSTNIG00000007470	lrpprc	99	49.817	Tetraodon_nigroviridis
ENSCSEG00000003850	lrpprc	88	51.410	ENSTTRG00000006403	LRPPRC	99	40.686	Tursiops_truncatus
ENSCSEG00000003850	lrpprc	83	49.877	ENSVPAG00000008993	LRPPRC	88	49.877	Vicugna_pacos
ENSCSEG00000003850	lrpprc	96	51.927	ENSXETG00000009296	lrpprc	99	44.739	Xenopus_tropicalis
ENSCSEG00000003850	lrpprc	97	57.026	ENSXCOG00000013343	lrpprc	95	57.843	Xiphophorus_couchianus
ENSCSEG00000003850	lrpprc	96	58.594	ENSXMAG00000018108	lrpprc	99	51.536	Xiphophorus_maculatus