EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000003860 (Gene tree)
Gene ID: 103391643
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 12488 bases
Position: chr16:2515822-2528309
Accession: 103391643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000005987	SF3b1	PF08920.10	9.8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000006051	-	3876	XM_008327993	ENSCSEP00000005987	1291 (aa)	XP_008326215	-

Gene Model

Click here to download ENSCSEG00000003860's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000003860's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000003860	sf3b1	100	89.939	ENSG00000115524	SF3B1	94	97.788	Homo_sapiens
ENSCSEG00000003860	sf3b1	100	94.297	ENSAPOG00000011894	sf3b1	100	94.297	Acanthochromis_polyacanthus
ENSCSEG00000003860	sf3b1	99	89.877	ENSAMEG00000013809	SF3B1	99	89.954	Ailuropoda_melanoleuca
ENSCSEG00000003860	sf3b1	100	93.664	ENSACIG00000020910	sf3b1	97	93.664	Amphilophus_citrinellus
ENSCSEG00000003860	sf3b1	100	94.297	ENSAOCG00000004478	sf3b1	100	94.297	Amphiprion_ocellaris
ENSCSEG00000003860	sf3b1	100	94.297	ENSAPEG00000012937	sf3b1	100	94.297	Amphiprion_percula
ENSCSEG00000003860	sf3b1	100	94.444	ENSATEG00000020435	sf3b1	100	94.444	Anabas_testudineus
ENSCSEG00000003860	sf3b1	99	90.161	ENSAPLG00000003993	SF3B1	99	90.161	Anas_platyrhynchos
ENSCSEG00000003860	sf3b1	100	89.931	ENSACAG00000009612	SF3B1	100	89.931	Anolis_carolinensis
ENSCSEG00000003860	sf3b1	100	89.939	ENSANAG00000021577	SF3B1	100	91.495	Aotus_nancymaae
ENSCSEG00000003860	sf3b1	100	93.075	ENSACLG00000023470	sf3b1	100	93.075	Astatotilapia_calliptera
ENSCSEG00000003860	sf3b1	100	92.781	ENSAMXG00000002219	sf3b1	100	92.781	Astyanax_mexicanus
ENSCSEG00000003860	sf3b1	100	89.939	ENSBTAG00000008915	SF3B1	100	90.015	Bos_taurus
ENSCSEG00000003860	sf3b1	98	62.199	WBGene00011605	sftb-1	97	62.199	Caenorhabditis_elegans
ENSCSEG00000003860	sf3b1	100	89.939	ENSCJAG00000003902	SF3B1	100	90.015	Callithrix_jacchus
ENSCSEG00000003860	sf3b1	100	89.939	ENSCAFG00000010826	SF3B1	100	90.015	Canis_familiaris
ENSCSEG00000003860	sf3b1	100	89.939	ENSCAFG00020004750	SF3B1	100	90.015	Canis_lupus_dingo
ENSCSEG00000003860	sf3b1	100	89.939	ENSCHIG00000015226	SF3B1	100	90.015	Capra_hircus
ENSCSEG00000003860	sf3b1	100	89.863	ENSTSYG00000009214	SF3B1	100	89.939	Carlito_syrichta
ENSCSEG00000003860	sf3b1	99	89.832	ENSCAPG00000006547	SF3B1	99	89.908	Cavia_aperea
ENSCSEG00000003860	sf3b1	99	89.939	ENSCPOG00000009353	SF3B1	100	90.015	Cavia_porcellus
ENSCSEG00000003860	sf3b1	99	91.121	ENSCCAG00000020506	SF3B1	100	91.277	Cebus_capucinus
ENSCSEG00000003860	sf3b1	100	89.939	ENSCATG00000035735	SF3B1	100	90.015	Cercocebus_atys
ENSCSEG00000003860	sf3b1	99	89.946	ENSCLAG00000014767	SF3B1	99	90.023	Chinchilla_lanigera
ENSCSEG00000003860	sf3b1	100	89.939	ENSCSAG00000011505	SF3B1	100	90.015	Chlorocebus_sabaeus
ENSCSEG00000003860	sf3b1	76	87.343	ENSCHOG00000009860	SF3B1	76	87.343	Choloepus_hoffmanni
ENSCSEG00000003860	sf3b1	100	90.076	ENSCPBG00000021902	SF3B1	99	91.385	Chrysemys_picta_bellii
ENSCSEG00000003860	sf3b1	68	73.246	ENSCING00000002558	-	99	73.533	Ciona_intestinalis
ENSCSEG00000003860	sf3b1	99	76.755	ENSCSAVG00000002559	-	99	76.755	Ciona_savignyi
ENSCSEG00000003860	sf3b1	100	89.939	ENSCANG00000029415	SF3B1	100	90.015	Colobus_angolensis_palliatus
ENSCSEG00000003860	sf3b1	100	89.939	ENSCGRG00001016990	Sf3b1	100	90.015	Cricetulus_griseus_chok1gshd
ENSCSEG00000003860	sf3b1	100	89.939	ENSCGRG00000005301	Sf3b1	100	90.015	Cricetulus_griseus_crigri
ENSCSEG00000003860	sf3b1	96	93.824	ENSCVAG00000003680	sf3b1	99	93.824	Cyprinodon_variegatus
ENSCSEG00000003860	sf3b1	100	91.711	ENSDARG00000056138	sf3b1	100	91.711	Danio_rerio
ENSCSEG00000003860	sf3b1	100	89.871	ENSDNOG00000011754	SF3B1	100	90.023	Dasypus_novemcinctus
ENSCSEG00000003860	sf3b1	99	88.172	ENSDORG00000002399	Sf3b1	100	88.172	Dipodomys_ordii
ENSCSEG00000003860	sf3b1	100	72.721	FBgn0031266	Sf3b1	100	72.721	Drosophila_melanogaster
ENSCSEG00000003860	sf3b1	82	88.029	ENSETEG00000009188	SF3B1	100	88.214	Echinops_telfairi
ENSCSEG00000003860	sf3b1	99	82.555	ENSEBUG00000004325	sf3b1	100	85.220	Eptatretus_burgeri
ENSCSEG00000003860	sf3b1	100	89.939	ENSEASG00005020159	SF3B1	98	90.015	Equus_asinus_asinus
ENSCSEG00000003860	sf3b1	100	89.939	ENSECAG00000021657	SF3B1	98	90.015	Equus_caballus
ENSCSEG00000003860	sf3b1	88	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSCSEG00000003860	sf3b1	100	91.843	ENSELUG00000005977	sf3b1	98	91.843	Esox_lucius
ENSCSEG00000003860	sf3b1	100	89.939	ENSFCAG00000005038	SF3B1	100	90.015	Felis_catus
ENSCSEG00000003860	sf3b1	99	90.238	ENSFALG00000004281	SF3B1	99	90.238	Ficedula_albicollis
ENSCSEG00000003860	sf3b1	100	89.939	ENSFDAG00000017510	SF3B1	100	90.015	Fukomys_damarensis
ENSCSEG00000003860	sf3b1	100	93.156	ENSFHEG00000014333	sf3b1	100	93.156	Fundulus_heteroclitus
ENSCSEG00000003860	sf3b1	100	92.003	ENSGMOG00000006773	sf3b1	100	92.308	Gadus_morhua
ENSCSEG00000003860	sf3b1	100	90.153	ENSGALG00000008038	SF3B1	100	90.153	Gallus_gallus
ENSCSEG00000003860	sf3b1	100	92.449	ENSGAFG00000000704	sf3b1	100	94.054	Gambusia_affinis
ENSCSEG00000003860	sf3b1	100	93.369	ENSGACG00000008839	sf3b1	100	93.369	Gasterosteus_aculeatus
ENSCSEG00000003860	sf3b1	100	89.462	ENSGAGG00000017478	SF3B1	100	89.462	Gopherus_agassizii
ENSCSEG00000003860	sf3b1	99	84.869	ENSGGOG00000009264	SF3B1	99	84.946	Gorilla_gorilla
ENSCSEG00000003860	sf3b1	99	93.140	ENSHBUG00000007705	sf3b1	99	93.140	Haplochromis_burtoni
ENSCSEG00000003860	sf3b1	99	89.946	ENSHGLG00000008285	-	99	90.023	Heterocephalus_glaber_female
ENSCSEG00000003860	sf3b1	99	87.951	ENSHGLG00100005535	-	99	88.104	Heterocephalus_glaber_male
ENSCSEG00000003860	sf3b1	100	93.495	ENSHCOG00000016775	sf3b1	100	93.495	Hippocampus_comes
ENSCSEG00000003860	sf3b1	100	92.776	ENSIPUG00000013171	sf3b1	100	92.776	Ictalurus_punctatus
ENSCSEG00000003860	sf3b1	100	89.939	ENSSTOG00000011034	SF3B1	100	90.015	Ictidomys_tridecemlineatus
ENSCSEG00000003860	sf3b1	99	89.908	ENSJJAG00000010903	Sf3b1	99	89.985	Jaculus_jaculus
ENSCSEG00000003860	sf3b1	100	93.096	ENSKMAG00000004009	sf3b1	100	93.096	Kryptolebias_marmoratus
ENSCSEG00000003860	sf3b1	100	93.817	ENSLBEG00000022208	sf3b1	100	93.817	Labrus_bergylta
ENSCSEG00000003860	sf3b1	99	87.050	ENSLACG00000014832	SF3B1	99	87.347	Latimeria_chalumnae
ENSCSEG00000003860	sf3b1	100	91.116	ENSLOCG00000003899	sf3b1	100	91.116	Lepisosteus_oculatus
ENSCSEG00000003860	sf3b1	100	89.939	ENSLAFG00000001956	SF3B1	100	90.015	Loxodonta_africana
ENSCSEG00000003860	sf3b1	99	89.946	ENSMMUG00000022430	SF3B1	99	90.023	Macaca_mulatta
ENSCSEG00000003860	sf3b1	100	89.939	ENSMNEG00000042333	SF3B1	100	91.495	Macaca_nemestrina
ENSCSEG00000003860	sf3b1	94	85.530	ENSMLEG00000026141	SF3B1	98	85.956	Mandrillus_leucophaeus
ENSCSEG00000003860	sf3b1	100	94.140	ENSMAMG00000010241	sf3b1	100	94.140	Mastacembelus_armatus
ENSCSEG00000003860	sf3b1	100	93.075	ENSMZEG00005021254	sf3b1	100	93.075	Maylandia_zebra
ENSCSEG00000003860	sf3b1	99	89.547	ENSMGAG00000007017	SF3B1	99	89.547	Meleagris_gallopavo
ENSCSEG00000003860	sf3b1	99	85.725	ENSMAUG00000009071	Sf3b1	99	85.802	Mesocricetus_auratus
ENSCSEG00000003860	sf3b1	100	89.939	ENSMICG00000013879	SF3B1	100	90.015	Microcebus_murinus
ENSCSEG00000003860	sf3b1	99	85.506	ENSMOCG00000000455	Sf3b1	99	85.583	Microtus_ochrogaster
ENSCSEG00000003860	sf3b1	83	93.151	ENSMMOG00000000475	sf3b1	100	93.151	Mola_mola
ENSCSEG00000003860	sf3b1	100	89.329	ENSMODG00000012275	SF3B1	100	89.482	Monodelphis_domestica
ENSCSEG00000003860	sf3b1	100	93.988	ENSMALG00000017211	sf3b1	100	93.988	Monopterus_albus
ENSCSEG00000003860	sf3b1	100	89.939	MGP_CAROLIEiJ_G0014141	Sf3b1	100	90.015	Mus_caroli
ENSCSEG00000003860	sf3b1	100	89.939	ENSMUSG00000025982	Sf3b1	100	90.015	Mus_musculus
ENSCSEG00000003860	sf3b1	100	89.939	MGP_SPRETEiJ_G0014947	Sf3b1	100	90.015	Mus_spretus
ENSCSEG00000003860	sf3b1	100	89.939	ENSMPUG00000007799	SF3B1	100	90.015	Mustela_putorius_furo
ENSCSEG00000003860	sf3b1	100	88.796	ENSMLUG00000000840	SF3B1	100	88.948	Myotis_lucifugus
ENSCSEG00000003860	sf3b1	99	89.679	ENSNGAG00000021884	-	100	89.755	Nannospalax_galili
ENSCSEG00000003860	sf3b1	100	88.863	ENSNBRG00000015816	sf3b1	100	88.863	Neolamprologus_brichardi
ENSCSEG00000003860	sf3b1	100	89.939	ENSNLEG00000006861	SF3B1	100	90.015	Nomascus_leucogenys
ENSCSEG00000003860	sf3b1	68	92.500	ENSMEUG00000015848	-	66	92.500	Notamacropus_eugenii
ENSCSEG00000003860	sf3b1	100	77.778	ENSOPRG00000008596	SF3B1	100	77.852	Ochotona_princeps
ENSCSEG00000003860	sf3b1	100	89.939	ENSODEG00000011153	-	100	90.015	Octodon_degus
ENSCSEG00000003860	sf3b1	100	93.075	ENSONIG00000013758	sf3b1	100	93.075	Oreochromis_niloticus
ENSCSEG00000003860	sf3b1	83	91.460	ENSOCUG00000012722	-	96	91.882	Oryctolagus_cuniculus
ENSCSEG00000003860	sf3b1	100	93.379	ENSORLG00000020219	sf3b1	100	93.379	Oryzias_latipes
ENSCSEG00000003860	sf3b1	100	93.379	ENSORLG00020001746	sf3b1	100	93.379	Oryzias_latipes_hni
ENSCSEG00000003860	sf3b1	64	90.107	ENSORLG00015001759	sf3b1	98	90.107	Oryzias_latipes_hsok
ENSCSEG00000003860	sf3b1	100	93.612	ENSOMEG00000019231	sf3b1	100	93.612	Oryzias_melastigma
ENSCSEG00000003860	sf3b1	100	89.939	ENSOARG00000015374	SF3B1	100	90.015	Ovis_aries
ENSCSEG00000003860	sf3b1	100	89.939	ENSPPAG00000035007	SF3B1	100	90.015	Pan_paniscus
ENSCSEG00000003860	sf3b1	100	89.939	ENSPPRG00000009090	SF3B1	100	90.015	Panthera_pardus
ENSCSEG00000003860	sf3b1	100	89.939	ENSPTIG00000021557	SF3B1	100	90.015	Panthera_tigris_altaica
ENSCSEG00000003860	sf3b1	99	82.695	ENSPTRG00000012771	SF3B1	99	82.772	Pan_troglodytes
ENSCSEG00000003860	sf3b1	100	89.939	ENSPANG00000013417	SF3B1	100	90.015	Papio_anubis
ENSCSEG00000003860	sf3b1	100	92.079	ENSPKIG00000000784	sf3b1	100	92.079	Paramormyrops_kingsleyae
ENSCSEG00000003860	sf3b1	99	89.000	ENSPSIG00000017222	SF3B1	98	89.000	Pelodiscus_sinensis
ENSCSEG00000003860	sf3b1	90	93.597	ENSPMGG00000004330	sf3b1	99	93.597	Periophthalmus_magnuspinnatus
ENSCSEG00000003860	sf3b1	99	89.946	ENSPEMG00000010699	Sf3b1	100	90.023	Peromyscus_maniculatus_bairdii
ENSCSEG00000003860	sf3b1	100	85.823	ENSPMAG00000001311	sf3b1	100	86.126	Petromyzon_marinus
ENSCSEG00000003860	sf3b1	100	89.329	ENSPCIG00000010642	SF3B1	100	89.482	Phascolarctos_cinereus
ENSCSEG00000003860	sf3b1	100	93.921	ENSPFOG00000000073	sf3b1	100	93.921	Poecilia_formosa
ENSCSEG00000003860	sf3b1	100	93.992	ENSPLAG00000002293	sf3b1	100	93.992	Poecilia_latipinna
ENSCSEG00000003860	sf3b1	100	93.992	ENSPMEG00000000446	sf3b1	98	93.992	Poecilia_mexicana
ENSCSEG00000003860	sf3b1	100	94.068	ENSPREG00000019652	sf3b1	100	94.068	Poecilia_reticulata
ENSCSEG00000003860	sf3b1	84	91.049	ENSPPYG00000013044	SF3B1	97	91.049	Pongo_abelii
ENSCSEG00000003860	sf3b1	100	89.787	ENSPCAG00000009292	SF3B1	100	89.863	Procavia_capensis
ENSCSEG00000003860	sf3b1	100	89.939	ENSPCOG00000024074	SF3B1	100	90.015	Propithecus_coquereli
ENSCSEG00000003860	sf3b1	100	89.939	ENSPVAG00000008302	SF3B1	100	90.015	Pteropus_vampyrus
ENSCSEG00000003860	sf3b1	100	92.998	ENSPNYG00000014939	sf3b1	100	92.998	Pundamilia_nyererei
ENSCSEG00000003860	sf3b1	100	92.477	ENSPNAG00000008288	sf3b1	100	92.477	Pygocentrus_nattereri
ENSCSEG00000003860	sf3b1	100	89.939	ENSRNOG00000013516	Sf3b1	100	90.015	Rattus_norvegicus
ENSCSEG00000003860	sf3b1	99	87.626	ENSRBIG00000026096	SF3B1	99	87.782	Rhinopithecus_bieti
ENSCSEG00000003860	sf3b1	100	89.939	ENSRROG00000031308	SF3B1	100	90.015	Rhinopithecus_roxellana
ENSCSEG00000003860	sf3b1	100	89.939	ENSSBOG00000020080	SF3B1	100	90.015	Saimiri_boliviensis_boliviensis
ENSCSEG00000003860	sf3b1	100	89.329	ENSSHAG00000017564	SF3B1	100	89.482	Sarcophilus_harrisii
ENSCSEG00000003860	sf3b1	100	92.167	ENSSFOG00015021535	sf3b1	100	92.167	Scleropages_formosus
ENSCSEG00000003860	sf3b1	99	93.778	ENSSMAG00000013977	sf3b1	99	93.778	Scophthalmus_maximus
ENSCSEG00000003860	sf3b1	100	94.521	ENSSDUG00000017422	sf3b1	100	94.521	Seriola_dumerili
ENSCSEG00000003860	sf3b1	100	94.521	ENSSLDG00000019495	sf3b1	100	94.521	Seriola_lalandi_dorsalis
ENSCSEG00000003860	sf3b1	72	98.833	ENSSARG00000007016	SF3B1	71	98.833	Sorex_araneus
ENSCSEG00000003860	sf3b1	100	89.847	ENSSPUG00000000410	SF3B1	100	89.847	Sphenodon_punctatus
ENSCSEG00000003860	sf3b1	100	94.064	ENSSPAG00000010451	sf3b1	99	94.064	Stegastes_partitus
ENSCSEG00000003860	sf3b1	89	91.495	ENSSSCG00000016075	SF3B1	100	91.495	Sus_scrofa
ENSCSEG00000003860	sf3b1	100	90.076	ENSTGUG00000010553	SF3B1	100	90.076	Taeniopygia_guttata
ENSCSEG00000003860	sf3b1	100	93.607	ENSTRUG00000015534	sf3b1	100	93.607	Takifugu_rubripes
ENSCSEG00000003860	sf3b1	84	92.355	ENSTBEG00000008714	SF3B1	93	92.355	Tupaia_belangeri
ENSCSEG00000003860	sf3b1	92	87.737	ENSTTRG00000003414	SF3B1	92	87.737	Tursiops_truncatus
ENSCSEG00000003860	sf3b1	99	97.976	ENSUAMG00000018506	SF3B1	99	97.976	Ursus_americanus
ENSCSEG00000003860	sf3b1	100	89.939	ENSUMAG00000020945	SF3B1	100	90.015	Ursus_maritimus
ENSCSEG00000003860	sf3b1	95	89.073	ENSVPAG00000005798	SF3B1	96	89.073	Vicugna_pacos
ENSCSEG00000003860	sf3b1	100	89.939	ENSVVUG00000025948	SF3B1	95	90.091	Vulpes_vulpes
ENSCSEG00000003860	sf3b1	100	87.957	ENSXETG00000013339	sf3b1	100	87.957	Xenopus_tropicalis
ENSCSEG00000003860	sf3b1	100	89.855	ENSXCOG00000018086	sf3b1	100	90.160	Xiphophorus_couchianus
ENSCSEG00000003860	sf3b1	100	93.992	ENSXMAG00000007369	sf3b1	100	93.992	Xiphophorus_maculatus