EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000003887 (Gene tree)
Gene ID: 103388317
Gene Symbol: -
Alias: -
Full Name: non-canonical poly(A) RNA polymerase PAPD7-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 10267 bases
Position: chr13:6352011-6362277
Accession: 103388317
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000006023	PAP_assoc	PF03828.19	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000006088	-	5508	XM_008323250	ENSCSEP00000006023	816 (aa)	XP_008321472	UPI0004974B31

Gene Model

Click here to download ENSCSEG00000003887's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000003887's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000003887	-	67	52.269	ENSCSEG00000011367	tent4b	73	52.793
ENSCSEG00000003887	-	57	89.655	ENSCSEG00000011470	tent4a	78	89.655

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000003887	-	78	51.952	ENSG00000112941	TENT4A	100	77.778	Homo_sapiens
ENSCSEG00000003887	-	65	89.655	ENSAPOG00000002178	tent4a	67	89.655	Acanthochromis_polyacanthus
ENSCSEG00000003887	-	100	78.372	ENSAPOG00000018106	-	100	78.858	Acanthochromis_polyacanthus
ENSCSEG00000003887	-	69	54.720	ENSAMEG00000002806	TENT4A	97	54.720	Ailuropoda_melanoleuca
ENSCSEG00000003887	-	74	69.079	ENSACIG00000014234	-	91	67.928	Amphilophus_citrinellus
ENSCSEG00000003887	-	52	60.329	ENSACIG00000013326	tent4a	77	60.329	Amphilophus_citrinellus
ENSCSEG00000003887	-	56	89.655	ENSAOCG00000019251	tent4a	75	89.655	Amphiprion_ocellaris
ENSCSEG00000003887	-	100	79.589	ENSAOCG00000013501	-	100	80.193	Amphiprion_ocellaris
ENSCSEG00000003887	-	100	79.735	ENSAPEG00000015522	-	100	80.579	Amphiprion_percula
ENSCSEG00000003887	-	56	89.655	ENSAPEG00000002703	tent4a	76	89.655	Amphiprion_percula
ENSCSEG00000003887	-	100	80.535	ENSATEG00000024197	-	100	80.292	Anabas_testudineus
ENSCSEG00000003887	-	84	51.715	ENSATEG00000006898	tent4a	76	86.207	Anabas_testudineus
ENSCSEG00000003887	-	80	87.097	ENSANAG00000037806	TENT4A	85	87.097	Aotus_nancymaae
ENSCSEG00000003887	-	100	73.253	ENSACLG00000016812	-	100	73.614	Astatotilapia_calliptera
ENSCSEG00000003887	-	52	64.186	ENSACLG00000014408	tent4a	100	51.567	Astatotilapia_calliptera
ENSCSEG00000003887	-	84	83.333	ENSAMXG00000017691	tent4a	66	66.667	Astyanax_mexicanus
ENSCSEG00000003887	-	83	52.766	ENSAMXG00000039964	TENT4A	100	48.029	Astyanax_mexicanus
ENSCSEG00000003887	-	66	54.212	ENSBTAG00000003381	TENT4A	98	59.681	Bos_taurus
ENSCSEG00000003887	-	79	51.343	ENSCJAG00000008742	TENT4A	98	46.362	Callithrix_jacchus
ENSCSEG00000003887	-	69	54.545	ENSCAFG00000010319	TENT4A	97	54.371	Canis_familiaris
ENSCSEG00000003887	-	69	54.545	ENSCAFG00020022835	TENT4A	97	54.371	Canis_lupus_dingo
ENSCSEG00000003887	-	70	54.082	ENSCHIG00000017328	TENT4A	99	54.082	Capra_hircus
ENSCSEG00000003887	-	69	54.196	ENSTSYG00000000631	TENT4A	97	54.196	Carlito_syrichta
ENSCSEG00000003887	-	69	53.913	ENSCAPG00000007792	TENT4A	97	53.578	Cavia_aperea
ENSCSEG00000003887	-	77	51.216	ENSCPOG00000009006	TENT4A	97	53.578	Cavia_porcellus
ENSCSEG00000003887	-	78	52.102	ENSCCAG00000006730	TENT4A	97	54.021	Cebus_capucinus
ENSCSEG00000003887	-	78	51.135	ENSCATG00000034531	TENT4A	82	50.599	Cercocebus_atys
ENSCSEG00000003887	-	69	54.021	ENSCSAG00000017336	TENT4A	97	54.021	Chlorocebus_sabaeus
ENSCSEG00000003887	-	77	54.325	ENSCPBG00000006514	TENT4A	100	48.899	Chrysemys_picta_bellii
ENSCSEG00000003887	-	69	54.021	ENSCANG00000022871	TENT4A	97	54.021	Colobus_angolensis_palliatus
ENSCSEG00000003887	-	78	52.259	ENSCGRG00001014344	Tent4a	98	45.476	Cricetulus_griseus_chok1gshd
ENSCSEG00000003887	-	69	54.211	ENSCGRG00000006274	Tent4a	97	54.181	Cricetulus_griseus_crigri
ENSCSEG00000003887	-	56	90.735	ENSCVAG00000008463	-	96	90.735	Cyprinodon_variegatus
ENSCSEG00000003887	-	65	89.655	ENSCVAG00000021741	tent4a	71	89.655	Cyprinodon_variegatus
ENSCSEG00000003887	-	63	64.449	ENSDARG00000062114	tent4a	99	57.143	Danio_rerio
ENSCSEG00000003887	-	77	52.388	ENSDNOG00000015096	TENT4A	91	53.014	Dasypus_novemcinctus
ENSCSEG00000003887	-	69	54.720	ENSDORG00000023216	Tent4a	97	54.720	Dipodomys_ordii
ENSCSEG00000003887	-	69	54.371	ENSEASG00005018583	TENT4A	97	54.895	Equus_asinus_asinus
ENSCSEG00000003887	-	77	53.096	ENSECAG00000010134	TENT4A	98	46.886	Equus_caballus
ENSCSEG00000003887	-	75	85.714	ENSELUG00000024141	tent4a	71	72.990	Esox_lucius
ENSCSEG00000003887	-	69	53.497	ENSFDAG00000005946	TENT4A	97	53.136	Fukomys_damarensis
ENSCSEG00000003887	-	86	49.552	ENSFHEG00000017843	tent4a	100	44.734	Fundulus_heteroclitus
ENSCSEG00000003887	-	100	71.394	ENSFHEG00000006086	-	100	71.636	Fundulus_heteroclitus
ENSCSEG00000003887	-	80	89.286	ENSGALG00000013061	PAPD7	71	80.328	Gallus_gallus
ENSCSEG00000003887	-	100	74.667	ENSGAFG00000000179	-	100	75.152	Gambusia_affinis
ENSCSEG00000003887	-	88	72.500	ENSGAFG00000018741	tent4a	100	45.567	Gambusia_affinis
ENSCSEG00000003887	-	70	52.605	ENSGACG00000008953	tent4a	67	69.293	Gasterosteus_aculeatus
ENSCSEG00000003887	-	77	52.301	ENSGGOG00000013866	-	85	52.705	Gorilla_gorilla
ENSCSEG00000003887	-	52	64.019	ENSHBUG00000022127	tent4a	100	51.415	Haplochromis_burtoni
ENSCSEG00000003887	-	100	73.494	ENSHBUG00000001038	-	100	73.855	Haplochromis_burtoni
ENSCSEG00000003887	-	81	87.097	ENSHGLG00000005593	TENT4A	97	53.590	Heterocephalus_glaber_female
ENSCSEG00000003887	-	69	53.086	ENSHGLG00100016621	TENT4A	97	53.590	Heterocephalus_glaber_male
ENSCSEG00000003887	-	56	87.963	ENSHCOG00000000915	-	92	87.963	Hippocampus_comes
ENSCSEG00000003887	-	99	48.220	ENSHCOG00000018008	tent4a	86	52.663	Hippocampus_comes
ENSCSEG00000003887	-	51	70.290	ENSIPUG00000000878	-	59	64.668	Ictalurus_punctatus
ENSCSEG00000003887	-	69	54.371	ENSSTOG00000004554	TENT4A	97	54.340	Ictidomys_tridecemlineatus
ENSCSEG00000003887	-	69	54.021	ENSJJAG00000007205	Tent4a	97	54.021	Jaculus_jaculus
ENSCSEG00000003887	-	99	73.722	ENSKMAG00000019925	-	100	74.078	Kryptolebias_marmoratus
ENSCSEG00000003887	-	100	82.976	ENSLBEG00000021596	-	100	82.738	Labrus_bergylta
ENSCSEG00000003887	-	76	89.655	ENSLBEG00000025657	tent4a	84	54.642	Labrus_bergylta
ENSCSEG00000003887	-	99	52.899	ENSLOCG00000008727	tent4a	98	53.494	Lepisosteus_oculatus
ENSCSEG00000003887	-	69	52.348	ENSLAFG00000004787	TENT4A	97	52.696	Loxodonta_africana
ENSCSEG00000003887	-	78	52.252	ENSMFAG00000038658	TENT4A	81	52.648	Macaca_fascicularis
ENSCSEG00000003887	-	78	52.252	ENSMMUG00000013189	TENT4A	77	52.648	Macaca_mulatta
ENSCSEG00000003887	-	78	52.102	ENSMNEG00000029090	TENT4A	98	47.268	Macaca_nemestrina
ENSCSEG00000003887	-	69	54.021	ENSMLEG00000030994	TENT4A	97	54.021	Mandrillus_leucophaeus
ENSCSEG00000003887	-	100	76.747	ENSMAMG00000024030	-	100	76.867	Mastacembelus_armatus
ENSCSEG00000003887	-	100	73.012	ENSMZEG00005001805	-	100	73.373	Maylandia_zebra
ENSCSEG00000003887	-	70	54.404	ENSMGAG00000006315	TENT4A	71	80.000	Meleagris_gallopavo
ENSCSEG00000003887	-	69	53.752	ENSMAUG00000008017	Tent4a	97	51.365	Mesocricetus_auratus
ENSCSEG00000003887	-	80	87.097	ENSMICG00000016562	TENT4A	85	87.097	Microcebus_murinus
ENSCSEG00000003887	-	69	53.671	ENSMOCG00000008477	Tent4a	97	54.450	Microtus_ochrogaster
ENSCSEG00000003887	-	50	68.835	ENSMMOG00000021181	tent4a	80	64.884	Mola_mola
ENSCSEG00000003887	-	64	75.196	ENSMMOG00000008539	-	100	75.196	Mola_mola
ENSCSEG00000003887	-	80	82.353	ENSMODG00000002052	TENT4A	79	82.353	Monodelphis_domestica
ENSCSEG00000003887	-	62	65.000	ENSMALG00000002692	tent4a	63	65.000	Monopterus_albus
ENSCSEG00000003887	-	81	79.881	ENSMALG00000018694	-	98	80.328	Monopterus_albus
ENSCSEG00000003887	-	78	49.621	MGP_CAROLIEiJ_G0018689	-	77	50.685	Mus_caroli
ENSCSEG00000003887	-	69	53.833	ENSMUSG00000034575	Tent4a	97	54.419	Mus_musculus
ENSCSEG00000003887	-	78	52.096	MGP_PahariEiJ_G0015770	-	77	53.003	Mus_pahari
ENSCSEG00000003887	-	82	87.097	MGP_SPRETEiJ_G0019573	-	81	87.097	Mus_spretus
ENSCSEG00000003887	-	69	54.196	ENSMPUG00000007530	TENT4A	97	54.196	Mustela_putorius_furo
ENSCSEG00000003887	-	69	53.553	ENSMLUG00000004424	TENT4A	97	54.073	Myotis_lucifugus
ENSCSEG00000003887	-	69	54.371	ENSNGAG00000006352	Tent4a	97	54.371	Nannospalax_galili
ENSCSEG00000003887	-	57	87.379	ENSNBRG00000009218	TENT4A	96	87.379	Neolamprologus_brichardi
ENSCSEG00000003887	-	78	47.447	ENSNLEG00000011434	-	87	47.806	Nomascus_leucogenys
ENSCSEG00000003887	-	59	43.967	ENSMEUG00000004007	TENT4A	99	43.967	Notamacropus_eugenii
ENSCSEG00000003887	-	69	54.021	ENSODEG00000018357	TENT4A	97	54.021	Octodon_degus
ENSCSEG00000003887	-	69	54.957	ENSOANG00000011579	-	98	54.957	Ornithorhynchus_anatinus
ENSCSEG00000003887	-	69	53.805	ENSOCUG00000017025	TENT4A	97	54.530	Oryctolagus_cuniculus
ENSCSEG00000003887	-	61	61.569	ENSORLG00000025175	tent4a	76	53.139	Oryzias_latipes
ENSCSEG00000003887	-	99	68.575	ENSORLG00000027691	-	99	68.697	Oryzias_latipes
ENSCSEG00000003887	-	99	69.306	ENSORLG00020022661	-	99	69.549	Oryzias_latipes_hni
ENSCSEG00000003887	-	99	66.510	ENSORLG00015006327	-	99	66.745	Oryzias_latipes_hsok
ENSCSEG00000003887	-	61	62.279	ENSOMEG00000013540	tent4a	56	61.660	Oryzias_melastigma
ENSCSEG00000003887	-	56	84.790	ENSOMEG00000014052	-	98	84.790	Oryzias_melastigma
ENSCSEG00000003887	-	69	53.659	ENSOGAG00000015032	TENT4A	97	53.659	Otolemur_garnettii
ENSCSEG00000003887	-	69	54.181	ENSOARG00000014904	TENT4A	97	54.181	Ovis_aries
ENSCSEG00000003887	-	69	53.846	ENSPPAG00000034356	TENT4A	97	53.846	Pan_paniscus
ENSCSEG00000003887	-	69	54.021	ENSPPRG00000002409	TENT4A	97	54.021	Panthera_pardus
ENSCSEG00000003887	-	78	51.952	ENSPTRG00000016717	TENT4A	90	50.449	Pan_troglodytes
ENSCSEG00000003887	-	78	51.135	ENSPANG00000004005	TENT4A	81	50.599	Papio_anubis
ENSCSEG00000003887	-	66	77.778	ENSPKIG00000024130	tent4a	77	62.428	Paramormyrops_kingsleyae
ENSCSEG00000003887	-	99	50.590	ENSPKIG00000020499	-	100	50.355	Paramormyrops_kingsleyae
ENSCSEG00000003887	-	70	55.424	ENSPSIG00000015964	TENT4A	100	55.424	Pelodiscus_sinensis
ENSCSEG00000003887	-	72	80.203	ENSPMGG00000007999	TENT4A	99	91.693	Periophthalmus_magnuspinnatus
ENSCSEG00000003887	-	69	54.720	ENSPEMG00000024121	Tent4a	97	55.148	Peromyscus_maniculatus_bairdii
ENSCSEG00000003887	-	81	82.353	ENSPCIG00000017056	TENT4A	86	54.041	Phascolarctos_cinereus
ENSCSEG00000003887	-	100	74.970	ENSPFOG00000016762	-	100	75.574	Poecilia_formosa
ENSCSEG00000003887	-	84	49.800	ENSPFOG00000003961	tent4a	93	49.196	Poecilia_formosa
ENSCSEG00000003887	-	100	44.769	ENSPLAG00000007134	tent4a	100	44.910	Poecilia_latipinna
ENSCSEG00000003887	-	71	80.442	ENSPLAG00000004468	TENT4A	99	93.525	Poecilia_latipinna
ENSCSEG00000003887	-	100	73.203	ENSPMEG00000009954	-	100	73.691	Poecilia_mexicana
ENSCSEG00000003887	-	100	44.928	ENSPMEG00000006428	tent4a	81	51.511	Poecilia_mexicana
ENSCSEG00000003887	-	100	66.302	ENSPREG00000011257	TENT4A	100	74.397	Poecilia_reticulata
ENSCSEG00000003887	-	50	80.000	ENSPREG00000017547	tent4a	99	50.853	Poecilia_reticulata
ENSCSEG00000003887	-	69	54.196	ENSPPYG00000015334	-	97	54.196	Pongo_abelii
ENSCSEG00000003887	-	79	51.719	ENSPCOG00000016295	TENT4A	97	54.021	Propithecus_coquereli
ENSCSEG00000003887	-	59	58.487	ENSPVAG00000000511	TENT4A	97	54.196	Pteropus_vampyrus
ENSCSEG00000003887	-	59	83.172	ENSPNYG00000008164	TENT4A	99	83.172	Pundamilia_nyererei
ENSCSEG00000003887	-	52	64.037	ENSPNYG00000010769	tent4a	100	51.572	Pundamilia_nyererei
ENSCSEG00000003887	-	84	53.456	ENSPNAG00000011603	TENT4A	77	53.858	Pygocentrus_nattereri
ENSCSEG00000003887	-	69	53.497	ENSRNOG00000017613	Tent4a	97	54.101	Rattus_norvegicus
ENSCSEG00000003887	-	69	54.021	ENSRBIG00000027491	TENT4A	97	54.021	Rhinopithecus_bieti
ENSCSEG00000003887	-	69	54.021	ENSRROG00000039864	TENT4A	97	54.021	Rhinopithecus_roxellana
ENSCSEG00000003887	-	69	54.021	ENSSBOG00000035549	TENT4A	97	54.021	Saimiri_boliviensis_boliviensis
ENSCSEG00000003887	-	69	55.130	ENSSHAG00000012100	TENT4A	97	55.130	Sarcophilus_harrisii
ENSCSEG00000003887	-	52	70.657	ENSSFOG00015001756	tent4a	87	70.657	Scleropages_formosus
ENSCSEG00000003887	-	56	63.539	ENSSFOG00015003516	-	98	56.272	Scleropages_formosus
ENSCSEG00000003887	-	65	79.302	ENSSMAG00000003989	-	98	96.440	Scophthalmus_maximus
ENSCSEG00000003887	-	62	58.601	ENSSMAG00000020671	tent4a	100	53.729	Scophthalmus_maximus
ENSCSEG00000003887	-	60	89.655	ENSSDUG00000002157	tent4a	76	89.655	Seriola_dumerili
ENSCSEG00000003887	-	100	88.415	ENSSDUG00000014825	-	100	88.415	Seriola_dumerili
ENSCSEG00000003887	-	52	67.898	ENSSLDG00000004371	tent4a	78	67.898	Seriola_lalandi_dorsalis
ENSCSEG00000003887	-	100	88.902	ENSSLDG00000019746	-	100	88.902	Seriola_lalandi_dorsalis
ENSCSEG00000003887	-	52	67.056	ENSSPAG00000003618	tent4a	77	67.056	Stegastes_partitus
ENSCSEG00000003887	-	100	80.435	ENSSPAG00000017401	-	100	80.797	Stegastes_partitus
ENSCSEG00000003887	-	92	83.905	ENSTRUG00000006698	-	98	83.377	Takifugu_rubripes
ENSCSEG00000003887	-	74	58.942	ENSTRUG00000012098	tent4a	82	71.196	Takifugu_rubripes
ENSCSEG00000003887	-	69	52.850	ENSTTRG00000012547	TENT4A	97	52.850	Tursiops_truncatus
ENSCSEG00000003887	-	70	55.232	ENSUAMG00000024711	TENT4A	92	55.232	Ursus_americanus
ENSCSEG00000003887	-	69	54.720	ENSUMAG00000021088	TENT4A	97	54.720	Ursus_maritimus
ENSCSEG00000003887	-	69	54.545	ENSVVUG00000017702	TENT4A	97	54.371	Vulpes_vulpes
ENSCSEG00000003887	-	53	64.203	ENSXCOG00000002570	tent4a	77	63.889	Xiphophorus_couchianus
ENSCSEG00000003887	-	57	84.984	ENSXMAG00000026228	TENT4A	98	84.984	Xiphophorus_maculatus
ENSCSEG00000003887	-	83	70.000	ENSXMAG00000013580	tent4a	84	68.407	Xiphophorus_maculatus