EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000003945 (Gene tree)
Gene ID: 103391665
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 15530 bases
Position: chr16:2792287-2807816
Accession: 103391665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000006131	Rif1_N	PF12231.8	1.1e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000006196	-	7233	XM_008328020	ENSCSEP00000006131	2288 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000003945's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000003945's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000003945	rif1	99	62.620	ENSAPOG00000011073	rif1	94	62.965	Acanthochromis_polyacanthus
ENSCSEG00000003945	rif1	92	71.588	ENSACIG00000017765	rif1	95	71.178	Amphilophus_citrinellus
ENSCSEG00000003945	rif1	99	62.071	ENSAOCG00000017231	rif1	94	62.071	Amphiprion_ocellaris
ENSCSEG00000003945	rif1	67	74.908	ENSAPEG00000013228	rif1	65	72.300	Amphiprion_percula
ENSCSEG00000003945	rif1	99	59.706	ENSATEG00000022887	rif1	97	60.210	Anabas_testudineus
ENSCSEG00000003945	rif1	64	53.933	ENSACAG00000003714	RIF1	63	53.933	Anolis_carolinensis
ENSCSEG00000003945	rif1	63	57.642	ENSANAG00000024840	RIF1	59	57.642	Aotus_nancymaae
ENSCSEG00000003945	rif1	52	66.038	ENSBTAG00000021020	RIF1	56	66.038	Bos_taurus
ENSCSEG00000003945	rif1	66	50.196	ENSCJAG00000003138	RIF1	59	58.079	Callithrix_jacchus
ENSCSEG00000003945	rif1	67	54.651	ENSCAFG00000005670	RIF1	60	54.651	Canis_familiaris
ENSCSEG00000003945	rif1	67	54.651	ENSCAFG00020016401	RIF1	63	54.651	Canis_lupus_dingo
ENSCSEG00000003945	rif1	64	56.967	ENSCHIG00000020327	RIF1	60	56.967	Capra_hircus
ENSCSEG00000003945	rif1	67	56.680	ENSTSYG00000008861	RIF1	66	56.680	Carlito_syrichta
ENSCSEG00000003945	rif1	58	45.051	ENSCAPG00000008957	RIF1	62	47.451	Cavia_aperea
ENSCSEG00000003945	rif1	55	46.357	ENSCPOG00000037898	RIF1	52	46.357	Cavia_porcellus
ENSCSEG00000003945	rif1	63	58.079	ENSCCAG00000024760	RIF1	59	58.079	Cebus_capucinus
ENSCSEG00000003945	rif1	67	54.231	ENSCATG00000033353	RIF1	63	54.231	Cercocebus_atys
ENSCSEG00000003945	rif1	62	52.941	ENSCLAG00000001517	RIF1	60	52.941	Chinchilla_lanigera
ENSCSEG00000003945	rif1	68	47.807	ENSCHOG00000007187	RIF1	63	56.889	Choloepus_hoffmanni
ENSCSEG00000003945	rif1	67	52.649	ENSCPBG00000025885	RIF1	69	52.649	Chrysemys_picta_bellii
ENSCSEG00000003945	rif1	66	52.308	ENSCGRG00001024589	Rif1	63	52.308	Cricetulus_griseus_chok1gshd
ENSCSEG00000003945	rif1	54	47.615	ENSCGRG00000010713	Rif1	53	48.400	Cricetulus_griseus_crigri
ENSCSEG00000003945	rif1	99	55.080	ENSCVAG00000022479	rif1	96	55.175	Cyprinodon_variegatus
ENSCSEG00000003945	rif1	59	57.092	ENSDARG00000062650	rif1	57	57.040	Danio_rerio
ENSCSEG00000003945	rif1	68	47.812	ENSDNOG00000011194	RIF1	66	54.264	Dasypus_novemcinctus
ENSCSEG00000003945	rif1	64	57.277	ENSETEG00000012421	RIF1	60	57.277	Echinops_telfairi
ENSCSEG00000003945	rif1	70	54.475	ENSEASG00005023434	RIF1	68	54.475	Equus_asinus_asinus
ENSCSEG00000003945	rif1	67	57.848	ENSECAG00000012679	RIF1	70	57.781	Equus_caballus
ENSCSEG00000003945	rif1	73	71.587	ENSELUG00000006826	rif1	64	71.587	Esox_lucius
ENSCSEG00000003945	rif1	67	54.086	ENSFCAG00000029742	RIF1	62	54.086	Felis_catus
ENSCSEG00000003945	rif1	57	54.264	ENSFALG00000013874	RIF1	51	51.679	Ficedula_albicollis
ENSCSEG00000003945	rif1	66	54.264	ENSFDAG00000006538	RIF1	62	54.264	Fukomys_damarensis
ENSCSEG00000003945	rif1	98	53.144	ENSFHEG00000013721	rif1	96	54.880	Fundulus_heteroclitus
ENSCSEG00000003945	rif1	69	64.925	ENSGMOG00000003517	rif1	99	64.925	Gadus_morhua
ENSCSEG00000003945	rif1	95	72.516	ENSGAFG00000017196	rif1	90	72.020	Gambusia_affinis
ENSCSEG00000003945	rif1	78	56.486	ENSGACG00000008579	rif1	79	56.919	Gasterosteus_aculeatus
ENSCSEG00000003945	rif1	65	54.982	ENSGAGG00000012595	RIF1	66	54.982	Gopherus_agassizii
ENSCSEG00000003945	rif1	99	58.647	ENSHBUG00000007125	rif1	99	58.848	Haplochromis_burtoni
ENSCSEG00000003945	rif1	64	50.943	ENSHGLG00100009807	RIF1	64	50.943	Heterocephalus_glaber_male
ENSCSEG00000003945	rif1	99	62.178	ENSHCOG00000015943	rif1	87	61.648	Hippocampus_comes
ENSCSEG00000003945	rif1	73	73.387	ENSIPUG00000021703	rif1	70	73.387	Ictalurus_punctatus
ENSCSEG00000003945	rif1	67	55.686	ENSSTOG00000020712	RIF1	62	55.686	Ictidomys_tridecemlineatus
ENSCSEG00000003945	rif1	68	54.918	ENSJJAG00000023000	Rif1	65	54.918	Jaculus_jaculus
ENSCSEG00000003945	rif1	99	55.532	ENSKMAG00000002852	rif1	97	55.048	Kryptolebias_marmoratus
ENSCSEG00000003945	rif1	99	65.831	ENSLBEG00000023196	rif1	96	65.076	Labrus_bergylta
ENSCSEG00000003945	rif1	67	54.576	ENSLACG00000005425	RIF1	65	54.576	Latimeria_chalumnae
ENSCSEG00000003945	rif1	66	62.057	ENSLOCG00000002657	rif1	78	63.121	Lepisosteus_oculatus
ENSCSEG00000003945	rif1	65	59.130	ENSLAFG00000009796	RIF1	62	59.130	Loxodonta_africana
ENSCSEG00000003945	rif1	67	56.017	ENSMLEG00000042945	RIF1	62	56.017	Mandrillus_leucophaeus
ENSCSEG00000003945	rif1	70	69.384	ENSMAMG00000001745	rif1	68	69.475	Mastacembelus_armatus
ENSCSEG00000003945	rif1	93	69.471	ENSMZEG00005020920	rif1	95	69.471	Maylandia_zebra
ENSCSEG00000003945	rif1	68	56.299	ENSMGAG00000012732	RIF1	57	48.140	Meleagris_gallopavo
ENSCSEG00000003945	rif1	65	57.642	ENSMICG00000046127	RIF1	61	57.642	Microcebus_murinus
ENSCSEG00000003945	rif1	54	46.873	ENSMOCG00000009381	Rif1	51	47.096	Microtus_ochrogaster
ENSCSEG00000003945	rif1	99	54.705	ENSMMOG00000006519	rif1	96	54.861	Mola_mola
ENSCSEG00000003945	rif1	63	56.410	ENSMODG00000003703	RIF1	61	56.410	Monodelphis_domestica
ENSCSEG00000003945	rif1	78	65.372	ENSMALG00000016759	rif1	84	65.372	Monopterus_albus
ENSCSEG00000003945	rif1	54	48.316	MGP_CAROLIEiJ_G0023555	Rif1	52	48.374	Mus_caroli
ENSCSEG00000003945	rif1	65	50.958	ENSMUSG00000036202	Rif1	62	50.958	Mus_musculus
ENSCSEG00000003945	rif1	54	46.184	MGP_PahariEiJ_G0025006	Rif1	58	43.641	Mus_pahari
ENSCSEG00000003945	rif1	54	48.471	MGP_SPRETEiJ_G0024476	Rif1	52	48.610	Mus_spretus
ENSCSEG00000003945	rif1	67	55.039	ENSMPUG00000000371	RIF1	62	55.039	Mustela_putorius_furo
ENSCSEG00000003945	rif1	52	56.277	ENSMLUG00000003376	RIF1	56	56.277	Myotis_lucifugus
ENSCSEG00000003945	rif1	56	48.593	ENSNGAG00000009268	Rif1	54	48.464	Nannospalax_galili
ENSCSEG00000003945	rif1	86	68.994	ENSNBRG00000014257	rif1	95	69.231	Neolamprologus_brichardi
ENSCSEG00000003945	rif1	65	53.636	ENSNLEG00000010955	RIF1	61	53.636	Nomascus_leucogenys
ENSCSEG00000003945	rif1	55	47.348	ENSODEG00000003950	RIF1	52	47.348	Octodon_degus
ENSCSEG00000003945	rif1	74	63.615	ENSONIG00000013657	rif1	97	59.185	Oreochromis_niloticus
ENSCSEG00000003945	rif1	52	53.642	ENSOANG00000006078	-	50	53.737	Ornithorhynchus_anatinus
ENSCSEG00000003945	rif1	69	48.829	ENSOCUG00000017435	RIF1	62	54.656	Oryctolagus_cuniculus
ENSCSEG00000003945	rif1	99	52.351	ENSORLG00020001302	rif1	96	52.375	Oryzias_latipes_hni
ENSCSEG00000003945	rif1	99	52.462	ENSORLG00015000009	rif1	96	52.411	Oryzias_latipes_hsok
ENSCSEG00000003945	rif1	81	70.040	ENSOMEG00000021513	rif1	76	54.935	Oryzias_melastigma
ENSCSEG00000003945	rif1	64	56.967	ENSOARG00000008930	RIF1	60	56.967	Ovis_aries
ENSCSEG00000003945	rif1	67	54.086	ENSPPRG00000003618	RIF1	62	54.086	Panthera_pardus
ENSCSEG00000003945	rif1	67	54.086	ENSPTIG00000020652	RIF1	62	54.086	Panthera_tigris_altaica
ENSCSEG00000003945	rif1	74	75.000	ENSPMGG00000016141	rif1	91	75.000	Periophthalmus_magnuspinnatus
ENSCSEG00000003945	rif1	54	48.197	ENSPEMG00000000446	Rif1	52	48.276	Peromyscus_maniculatus_bairdii
ENSCSEG00000003945	rif1	66	56.098	ENSPCIG00000009185	RIF1	64	56.098	Phascolarctos_cinereus
ENSCSEG00000003945	rif1	99	56.998	ENSPFOG00000017804	rif1	97	56.689	Poecilia_formosa
ENSCSEG00000003945	rif1	92	55.591	ENSPFOG00000000554	-	97	55.383	Poecilia_formosa
ENSCSEG00000003945	rif1	99	55.603	ENSPLAG00000017945	rif1	98	56.008	Poecilia_latipinna
ENSCSEG00000003945	rif1	89	54.657	ENSPMEG00000006897	-	95	55.083	Poecilia_mexicana
ENSCSEG00000003945	rif1	99	64.128	ENSPREG00000018052	rif1	96	64.128	Poecilia_reticulata
ENSCSEG00000003945	rif1	65	58.515	ENSPCOG00000027888	RIF1	61	58.515	Propithecus_coquereli
ENSCSEG00000003945	rif1	59	58.012	ENSPVAG00000014276	RIF1	56	58.071	Pteropus_vampyrus
ENSCSEG00000003945	rif1	93	66.806	ENSPNYG00000012940	rif1	94	66.806	Pundamilia_nyererei
ENSCSEG00000003945	rif1	70	62.939	ENSPNAG00000016685	rif1	76	66.782	Pygocentrus_nattereri
ENSCSEG00000003945	rif1	53	47.791	ENSRNOG00000054901	Rif1	52	46.749	Rattus_norvegicus
ENSCSEG00000003945	rif1	60	58.079	ENSSBOG00000029530	RIF1	58	58.079	Saimiri_boliviensis_boliviensis
ENSCSEG00000003945	rif1	54	49.324	ENSSHAG00000018552	RIF1	51	49.236	Sarcophilus_harrisii
ENSCSEG00000003945	rif1	75	68.699	ENSSFOG00015021539	rif1	78	68.699	Scleropages_formosus
ENSCSEG00000003945	rif1	99	62.740	ENSSMAG00000011704	rif1	91	74.733	Scophthalmus_maximus
ENSCSEG00000003945	rif1	62	72.740	ENSSDUG00000015632	rif1	63	72.966	Seriola_dumerili
ENSCSEG00000003945	rif1	99	62.614	ENSSLDG00000019531	rif1	96	62.946	Seriola_lalandi_dorsalis
ENSCSEG00000003945	rif1	51	51.134	ENSSPUG00000003062	RIF1	51	51.385	Sphenodon_punctatus
ENSCSEG00000003945	rif1	62	75.502	ENSSPAG00000018359	rif1	93	75.502	Stegastes_partitus
ENSCSEG00000003945	rif1	66	55.645	ENSSSCG00000016395	RIF1	62	55.870	Sus_scrofa
ENSCSEG00000003945	rif1	96	59.916	ENSTRUG00000015808	rif1	88	60.325	Takifugu_rubripes
ENSCSEG00000003945	rif1	65	61.533	ENSTNIG00000011538	rif1	65	61.999	Tetraodon_nigroviridis
ENSCSEG00000003945	rif1	64	68.657	ENSTBEG00000016082	RIF1	54	68.657	Tupaia_belangeri
ENSCSEG00000003945	rif1	67	52.830	ENSTTRG00000011190	RIF1	62	52.830	Tursiops_truncatus
ENSCSEG00000003945	rif1	54	55.039	ENSUAMG00000026385	RIF1	56	55.039	Ursus_americanus
ENSCSEG00000003945	rif1	65	55.039	ENSUMAG00000000337	RIF1	60	55.039	Ursus_maritimus
ENSCSEG00000003945	rif1	66	50.512	ENSVPAG00000002162	RIF1	59	55.602	Vicugna_pacos
ENSCSEG00000003945	rif1	69	48.867	ENSVVUG00000011293	RIF1	63	55.039	Vulpes_vulpes
ENSCSEG00000003945	rif1	53	48.379	ENSXETG00000004530	rif1	51	48.332	Xenopus_tropicalis
ENSCSEG00000003945	rif1	74	57.490	ENSXMAG00000000506	rif1	97	53.411	Xiphophorus_maculatus