EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000004116 (Gene tree)
Gene ID: 103381234
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 7405 bases
Position: chr7:12382573-12389977
Accession: 103381234
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000006362	Beta-Casp	PF10996.8	5e-21	1	1
ENSCSEP00000006356	Beta-Casp	PF10996.8	5e-21	1	1
ENSCSEP00000006362	Lactamase_B	PF00753.27	5e-06	1	1
ENSCSEP00000006356	Lactamase_B	PF00753.27	5.1e-06	1	1
ENSCSEP00000006362	RMMBL	PF07521.12	9.3e-15	1	1
ENSCSEP00000006356	RMMBL	PF07521.12	9.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000006434	-	4234	XM_008313501	ENSCSEP00000006362	788 (aa)	XP_008311723	-
ENSCSET00000006428	-	2650	-	ENSCSEP00000006356	795 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000004116's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000004116's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000004116	cpsf2	100	83.777	ENSG00000165934	CPSF2	100	87.500	Homo_sapiens
ENSCSEG00000004116	cpsf2	100	94.162	ENSAPOG00000001242	cpsf2	100	94.162	Acanthochromis_polyacanthus
ENSCSEG00000004116	cpsf2	100	94.043	ENSACIG00000009331	cpsf2	100	94.043	Amphilophus_citrinellus
ENSCSEG00000004116	cpsf2	100	94.543	ENSAOCG00000014095	cpsf2	100	94.543	Amphiprion_ocellaris
ENSCSEG00000004116	cpsf2	100	94.543	ENSAPEG00000009158	cpsf2	100	94.543	Amphiprion_percula
ENSCSEG00000004116	cpsf2	96	94.203	ENSATEG00000017644	cpsf2	99	93.802	Anabas_testudineus
ENSCSEG00000004116	cpsf2	100	83.565	ENSAPLG00000006330	CPSF2	100	83.565	Anas_platyrhynchos
ENSCSEG00000004116	cpsf2	100	83.397	ENSACAG00000009245	CPSF2	100	83.397	Anolis_carolinensis
ENSCSEG00000004116	cpsf2	100	83.904	ENSANAG00000022915	CPSF2	100	83.904	Aotus_nancymaae
ENSCSEG00000004116	cpsf2	100	89.227	ENSAMXG00000018696	cpsf2	100	89.227	Astyanax_mexicanus
ENSCSEG00000004116	cpsf2	100	83.904	ENSBTAG00000010227	CPSF2	100	83.904	Bos_taurus
ENSCSEG00000004116	cpsf2	100	42.173	WBGene00017313	cpsf-2	100	41.901	Caenorhabditis_elegans
ENSCSEG00000004116	cpsf2	100	83.904	ENSCJAG00000018069	CPSF2	100	83.904	Callithrix_jacchus
ENSCSEG00000004116	cpsf2	100	83.777	ENSCAFG00000010909	CPSF2	100	83.777	Canis_familiaris
ENSCSEG00000004116	cpsf2	100	83.777	ENSCAFG00020020670	CPSF2	100	83.777	Canis_lupus_dingo
ENSCSEG00000004116	cpsf2	100	83.904	ENSCHIG00000023848	CPSF2	100	83.904	Capra_hircus
ENSCSEG00000004116	cpsf2	100	83.777	ENSTSYG00000009036	CPSF2	100	83.777	Carlito_syrichta
ENSCSEG00000004116	cpsf2	100	83.904	ENSCPOG00000010899	CPSF2	100	83.904	Cavia_porcellus
ENSCSEG00000004116	cpsf2	100	83.904	ENSCCAG00000028088	CPSF2	100	83.904	Cebus_capucinus
ENSCSEG00000004116	cpsf2	100	83.904	ENSCATG00000030132	CPSF2	100	83.904	Cercocebus_atys
ENSCSEG00000004116	cpsf2	100	83.904	ENSCLAG00000012404	CPSF2	100	83.904	Chinchilla_lanigera
ENSCSEG00000004116	cpsf2	100	83.904	ENSCSAG00000011300	CPSF2	100	83.904	Chlorocebus_sabaeus
ENSCSEG00000004116	cpsf2	100	78.454	ENSCHOG00000012904	CPSF2	100	78.454	Choloepus_hoffmanni
ENSCSEG00000004116	cpsf2	100	83.904	ENSCPBG00000008766	CPSF2	98	83.924	Chrysemys_picta_bellii
ENSCSEG00000004116	cpsf2	100	52.547	ENSCING00000007881	-	100	52.298	Ciona_intestinalis
ENSCSEG00000004116	cpsf2	94	83.875	ENSCANG00000041651	CPSF2	99	83.989	Colobus_angolensis_palliatus
ENSCSEG00000004116	cpsf2	100	83.397	ENSCGRG00001006901	Cpsf2	100	83.397	Cricetulus_griseus_chok1gshd
ENSCSEG00000004116	cpsf2	100	83.397	ENSCGRG00000012416	Cpsf2	100	83.397	Cricetulus_griseus_crigri
ENSCSEG00000004116	cpsf2	100	92.766	ENSCVAG00000000095	cpsf2	100	92.766	Cyprinodon_variegatus
ENSCSEG00000004116	cpsf2	100	87.215	ENSDARG00000028971	cpsf2	100	87.215	Danio_rerio
ENSCSEG00000004116	cpsf2	100	83.904	ENSDNOG00000042757	CPSF2	100	83.904	Dasypus_novemcinctus
ENSCSEG00000004116	cpsf2	100	83.904	ENSDORG00000013709	Cpsf2	100	83.904	Dipodomys_ordii
ENSCSEG00000004116	cpsf2	100	52.658	FBgn0027873	Cpsf100	100	52.599	Drosophila_melanogaster
ENSCSEG00000004116	cpsf2	100	76.709	ENSETEG00000012123	CPSF2	100	76.709	Echinops_telfairi
ENSCSEG00000004116	cpsf2	52	76.773	ENSEBUG00000012098	cpsf2	93	76.773	Eptatretus_burgeri
ENSCSEG00000004116	cpsf2	89	88.737	ENSEASG00005021193	CPSF2	100	88.737	Equus_asinus_asinus
ENSCSEG00000004116	cpsf2	100	83.777	ENSECAG00000023935	CPSF2	100	83.777	Equus_caballus
ENSCSEG00000004116	cpsf2	100	88.972	ENSELUG00000008442	cpsf2	100	88.972	Esox_lucius
ENSCSEG00000004116	cpsf2	100	83.777	ENSFCAG00000007886	CPSF2	100	83.777	Felis_catus
ENSCSEG00000004116	cpsf2	100	83.650	ENSFALG00000002412	CPSF2	100	83.650	Ficedula_albicollis
ENSCSEG00000004116	cpsf2	100	83.777	ENSFDAG00000006327	CPSF2	100	83.777	Fukomys_damarensis
ENSCSEG00000004116	cpsf2	96	90.969	ENSFHEG00000015465	cpsf2	98	91.492	Fundulus_heteroclitus
ENSCSEG00000004116	cpsf2	100	89.001	ENSGMOG00000008761	cpsf2	100	89.001	Gadus_morhua
ENSCSEG00000004116	cpsf2	100	83.904	ENSGALG00000010783	CPSF2	100	84.157	Gallus_gallus
ENSCSEG00000004116	cpsf2	100	93.147	ENSGAFG00000001407	cpsf2	100	93.147	Gambusia_affinis
ENSCSEG00000004116	cpsf2	100	93.147	ENSGACG00000008418	cpsf2	100	93.147	Gasterosteus_aculeatus
ENSCSEG00000004116	cpsf2	100	83.777	ENSGAGG00000008287	CPSF2	100	83.777	Gopherus_agassizii
ENSCSEG00000004116	cpsf2	100	83.777	ENSGGOG00000011799	CPSF2	100	83.777	Gorilla_gorilla
ENSCSEG00000004116	cpsf2	100	92.513	ENSHBUG00000023466	cpsf2	100	92.513	Haplochromis_burtoni
ENSCSEG00000004116	cpsf2	100	83.904	ENSHGLG00000018311	CPSF2	100	83.904	Heterocephalus_glaber_female
ENSCSEG00000004116	cpsf2	100	83.904	ENSHGLG00100016460	CPSF2	100	83.904	Heterocephalus_glaber_male
ENSCSEG00000004116	cpsf2	100	92.132	ENSHCOG00000019527	cpsf2	98	92.132	Hippocampus_comes
ENSCSEG00000004116	cpsf2	100	89.861	ENSIPUG00000020857	cpsf2	100	89.861	Ictalurus_punctatus
ENSCSEG00000004116	cpsf2	100	83.904	ENSSTOG00000009528	CPSF2	100	83.904	Ictidomys_tridecemlineatus
ENSCSEG00000004116	cpsf2	100	83.777	ENSJJAG00000017925	Cpsf2	100	83.777	Jaculus_jaculus
ENSCSEG00000004116	cpsf2	100	91.878	ENSKMAG00000019429	cpsf2	100	91.878	Kryptolebias_marmoratus
ENSCSEG00000004116	cpsf2	95	92.637	ENSLBEG00000011585	cpsf2	100	92.637	Labrus_bergylta
ENSCSEG00000004116	cpsf2	100	82.256	ENSLACG00000019024	CPSF2	100	82.636	Latimeria_chalumnae
ENSCSEG00000004116	cpsf2	100	88.481	ENSLOCG00000014102	cpsf2	100	88.481	Lepisosteus_oculatus
ENSCSEG00000004116	cpsf2	100	83.565	ENSLAFG00000004891	CPSF2	100	83.565	Loxodonta_africana
ENSCSEG00000004116	cpsf2	100	83.904	ENSMFAG00000041212	CPSF2	100	83.904	Macaca_fascicularis
ENSCSEG00000004116	cpsf2	100	83.904	ENSMMUG00000000699	CPSF2	100	83.904	Macaca_mulatta
ENSCSEG00000004116	cpsf2	100	83.904	ENSMNEG00000031584	CPSF2	100	83.904	Macaca_nemestrina
ENSCSEG00000004116	cpsf2	100	83.904	ENSMLEG00000029394	CPSF2	100	83.904	Mandrillus_leucophaeus
ENSCSEG00000004116	cpsf2	100	94.924	ENSMAMG00000004235	cpsf2	100	94.924	Mastacembelus_armatus
ENSCSEG00000004116	cpsf2	100	92.640	ENSMZEG00005001769	cpsf2	100	92.640	Maylandia_zebra
ENSCSEG00000004116	cpsf2	100	83.671	ENSMGAG00000013122	CPSF2	100	83.924	Meleagris_gallopavo
ENSCSEG00000004116	cpsf2	100	83.523	ENSMAUG00000015160	Cpsf2	100	83.523	Mesocricetus_auratus
ENSCSEG00000004116	cpsf2	100	83.904	ENSMICG00000016441	CPSF2	100	83.904	Microcebus_murinus
ENSCSEG00000004116	cpsf2	100	83.397	ENSMOCG00000015372	Cpsf2	100	83.397	Microtus_ochrogaster
ENSCSEG00000004116	cpsf2	100	88.325	ENSMMOG00000015590	cpsf2	100	88.325	Mola_mola
ENSCSEG00000004116	cpsf2	100	84.030	ENSMODG00000002042	CPSF2	100	84.030	Monodelphis_domestica
ENSCSEG00000004116	cpsf2	100	90.482	ENSMALG00000022275	cpsf2	100	90.482	Monopterus_albus
ENSCSEG00000004116	cpsf2	100	83.523	ENSMUSG00000041781	Cpsf2	100	83.523	Mus_musculus
ENSCSEG00000004116	cpsf2	100	83.270	MGP_PahariEiJ_G0029791	Cpsf2	100	83.270	Mus_pahari
ENSCSEG00000004116	cpsf2	100	83.523	MGP_SPRETEiJ_G0018877	Cpsf2	100	83.523	Mus_spretus
ENSCSEG00000004116	cpsf2	100	83.777	ENSMPUG00000007617	CPSF2	98	83.797	Mustela_putorius_furo
ENSCSEG00000004116	cpsf2	100	83.523	ENSMLUG00000005570	CPSF2	100	83.523	Myotis_lucifugus
ENSCSEG00000004116	cpsf2	100	83.650	ENSNGAG00000020312	Cpsf2	100	83.650	Nannospalax_galili
ENSCSEG00000004116	cpsf2	100	92.893	ENSNBRG00000022402	cpsf2	100	92.893	Neolamprologus_brichardi
ENSCSEG00000004116	cpsf2	100	83.016	ENSNLEG00000017132	CPSF2	100	83.016	Nomascus_leucogenys
ENSCSEG00000004116	cpsf2	91	91.586	ENSMEUG00000008138	CPSF2	91	91.586	Notamacropus_eugenii
ENSCSEG00000004116	cpsf2	94	79.810	ENSOPRG00000008484	-	99	79.810	Ochotona_princeps
ENSCSEG00000004116	cpsf2	100	83.777	ENSODEG00000008682	CPSF2	100	83.777	Octodon_degus
ENSCSEG00000004116	cpsf2	100	93.020	ENSONIG00000005901	cpsf2	100	93.020	Oreochromis_niloticus
ENSCSEG00000004116	cpsf2	100	83.904	ENSOANG00000003822	CPSF2	100	83.904	Ornithorhynchus_anatinus
ENSCSEG00000004116	cpsf2	100	83.777	ENSOCUG00000005713	CPSF2	100	83.777	Oryctolagus_cuniculus
ENSCSEG00000004116	cpsf2	100	88.071	ENSORLG00000011628	cpsf2	100	88.071	Oryzias_latipes
ENSCSEG00000004116	cpsf2	100	93.401	ENSORLG00020016980	cpsf2	100	93.401	Oryzias_latipes_hni
ENSCSEG00000004116	cpsf2	100	93.401	ENSORLG00015011910	cpsf2	100	93.401	Oryzias_latipes_hsok
ENSCSEG00000004116	cpsf2	100	92.893	ENSOMEG00000022876	cpsf2	100	92.893	Oryzias_melastigma
ENSCSEG00000004116	cpsf2	100	80.910	ENSOARG00000012889	CPSF2	100	80.910	Ovis_aries
ENSCSEG00000004116	cpsf2	100	83.777	ENSPPAG00000039666	CPSF2	100	83.777	Pan_paniscus
ENSCSEG00000004116	cpsf2	99	83.756	ENSPPRG00000010869	CPSF2	100	83.756	Panthera_pardus
ENSCSEG00000004116	cpsf2	100	83.777	ENSPTIG00000021202	CPSF2	100	83.777	Panthera_tigris_altaica
ENSCSEG00000004116	cpsf2	100	83.777	ENSPTRG00000006651	CPSF2	100	83.777	Pan_troglodytes
ENSCSEG00000004116	cpsf2	100	83.904	ENSPANG00000017417	CPSF2	100	83.904	Papio_anubis
ENSCSEG00000004116	cpsf2	100	84.030	ENSPKIG00000021453	cpsf2	100	84.030	Paramormyrops_kingsleyae
ENSCSEG00000004116	cpsf2	100	83.397	ENSPSIG00000006289	CPSF2	100	83.397	Pelodiscus_sinensis
ENSCSEG00000004116	cpsf2	76	86.689	ENSPMGG00000002511	cpsf2	99	87.833	Periophthalmus_magnuspinnatus
ENSCSEG00000004116	cpsf2	100	83.523	ENSPEMG00000007917	Cpsf2	100	83.523	Peromyscus_maniculatus_bairdii
ENSCSEG00000004116	cpsf2	100	72.682	ENSPMAG00000006205	cpsf2	100	73.034	Petromyzon_marinus
ENSCSEG00000004116	cpsf2	100	84.030	ENSPCIG00000011393	CPSF2	100	84.030	Phascolarctos_cinereus
ENSCSEG00000004116	cpsf2	100	93.401	ENSPFOG00000018648	cpsf2	100	93.401	Poecilia_formosa
ENSCSEG00000004116	cpsf2	100	93.401	ENSPLAG00000019199	cpsf2	99	93.409	Poecilia_latipinna
ENSCSEG00000004116	cpsf2	96	93.281	ENSPMEG00000012100	cpsf2	100	93.039	Poecilia_mexicana
ENSCSEG00000004116	cpsf2	100	92.640	ENSPREG00000008960	cpsf2	100	92.640	Poecilia_reticulata
ENSCSEG00000004116	cpsf2	64	79.722	ENSPPYG00000029685	-	100	79.722	Pongo_abelii
ENSCSEG00000004116	cpsf2	100	83.777	ENSPCAG00000012477	CPSF2	100	83.777	Procavia_capensis
ENSCSEG00000004116	cpsf2	100	84.030	ENSPCOG00000026387	CPSF2	100	84.030	Propithecus_coquereli
ENSCSEG00000004116	cpsf2	64	89.286	ENSPVAG00000004223	CPSF2	65	89.286	Pteropus_vampyrus
ENSCSEG00000004116	cpsf2	100	92.522	ENSPNYG00000023356	cpsf2	100	92.522	Pundamilia_nyererei
ENSCSEG00000004116	cpsf2	100	90.114	ENSPNAG00000001849	cpsf2	100	90.114	Pygocentrus_nattereri
ENSCSEG00000004116	cpsf2	100	83.397	ENSRNOG00000005733	Cpsf2	100	83.397	Rattus_norvegicus
ENSCSEG00000004116	cpsf2	100	83.904	ENSRBIG00000044792	CPSF2	100	83.904	Rhinopithecus_bieti
ENSCSEG00000004116	cpsf2	100	83.904	ENSRROG00000034875	CPSF2	100	83.904	Rhinopithecus_roxellana
ENSCSEG00000004116	cpsf2	100	83.904	ENSSBOG00000024571	CPSF2	100	83.904	Saimiri_boliviensis_boliviensis
ENSCSEG00000004116	cpsf2	100	83.904	ENSSHAG00000010458	CPSF2	100	83.904	Sarcophilus_harrisii
ENSCSEG00000004116	cpsf2	100	90.621	ENSSFOG00015002117	cpsf2	100	90.621	Scleropages_formosus
ENSCSEG00000004116	cpsf2	100	92.893	ENSSMAG00000002001	cpsf2	100	93.409	Scophthalmus_maximus
ENSCSEG00000004116	cpsf2	100	94.797	ENSSDUG00000004084	cpsf2	100	94.797	Seriola_dumerili
ENSCSEG00000004116	cpsf2	100	94.162	ENSSLDG00000024330	cpsf2	100	94.162	Seriola_lalandi_dorsalis
ENSCSEG00000004116	cpsf2	58	93.333	ENSSARG00000009784	-	63	93.333	Sorex_araneus
ENSCSEG00000004116	cpsf2	100	83.904	ENSSPUG00000013485	CPSF2	100	83.904	Sphenodon_punctatus
ENSCSEG00000004116	cpsf2	100	94.416	ENSSPAG00000013284	cpsf2	100	94.416	Stegastes_partitus
ENSCSEG00000004116	cpsf2	100	83.777	ENSSSCG00000002447	CPSF2	100	83.777	Sus_scrofa
ENSCSEG00000004116	cpsf2	100	83.777	ENSTGUG00000012571	-	100	83.777	Taeniopygia_guttata
ENSCSEG00000004116	cpsf2	100	92.259	ENSTRUG00000003742	cpsf2	100	92.259	Takifugu_rubripes
ENSCSEG00000004116	cpsf2	100	91.139	ENSTNIG00000012228	cpsf2	100	91.899	Tetraodon_nigroviridis
ENSCSEG00000004116	cpsf2	91	81.739	ENSTBEG00000004530	CPSF2	94	81.739	Tupaia_belangeri
ENSCSEG00000004116	cpsf2	88	87.500	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSCSEG00000004116	cpsf2	100	83.904	ENSUAMG00000028071	CPSF2	100	83.904	Ursus_americanus
ENSCSEG00000004116	cpsf2	100	83.904	ENSUMAG00000005029	CPSF2	97	89.231	Ursus_maritimus
ENSCSEG00000004116	cpsf2	99	83.756	ENSVPAG00000003503	CPSF2	100	83.756	Vicugna_pacos
ENSCSEG00000004116	cpsf2	100	83.777	ENSVVUG00000024642	CPSF2	100	83.777	Vulpes_vulpes
ENSCSEG00000004116	cpsf2	100	82.763	ENSXETG00000010289	cpsf2	100	82.763	Xenopus_tropicalis
ENSCSEG00000004116	cpsf2	100	93.020	ENSXCOG00000001764	cpsf2	100	93.020	Xiphophorus_couchianus
ENSCSEG00000004116	cpsf2	100	93.401	ENSXMAG00000017048	cpsf2	100	93.401	Xiphophorus_maculatus