EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000004426 (Gene tree)
Gene ID: 103388634
Gene Symbol: si:ch211-212k18.5
Alias: fb25b09|wu:fb25b09
Full Name: spalt like transcription factor 2
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 7967 bases
Position: chr1:27161723-27169689
Accession: 103388634
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000006846	zf-C2H2	PF00096.26	2.3e-16	1	2
ENSCSEP00000006846	zf-C2H2	PF00096.26	2.3e-16	2	2
ENSCSEP00000006843	zf-C2H2	PF00096.26	2.8e-16	1	2
ENSCSEP00000006843	zf-C2H2	PF00096.26	2.8e-16	2	2
ENSCSEP00000006846	zf-met	PF12874.7	7.3e-10	1	2
ENSCSEP00000006846	zf-met	PF12874.7	7.3e-10	2	2
ENSCSEP00000006843	zf-met	PF12874.7	8.6e-10	1	2
ENSCSEP00000006843	zf-met	PF12874.7	8.6e-10	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000006918	-	6007	XM_008323704	ENSCSEP00000006843	1214 (aa)	XP_008321926	UPI0004956E5A
ENSCSET00000006921	-	6135	-	ENSCSEP00000006846	1183 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000004426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000004426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000004426	si:ch211-212k18.5	82	38.670	ENSCSEG00000021148	sall2	70	40.020

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000004426	si:ch211-212k18.5	73	69.444	ENSAPOG00000015347	sall2	64	69.444	Acanthochromis_polyacanthus
ENSCSEG00000004426	si:ch211-212k18.5	99	72.087	ENSAPOG00000013387	si:ch211-212k18.5	99	72.573	Acanthochromis_polyacanthus
ENSCSEG00000004426	si:ch211-212k18.5	80	79.044	ENSACIG00000019922	si:ch211-212k18.5	99	79.044	Amphilophus_citrinellus
ENSCSEG00000004426	si:ch211-212k18.5	99	70.931	ENSAOCG00000010737	si:ch211-212k18.5	99	71.151	Amphiprion_ocellaris
ENSCSEG00000004426	si:ch211-212k18.5	75	49.254	ENSAOCG00000016559	sall2	52	50.160	Amphiprion_ocellaris
ENSCSEG00000004426	si:ch211-212k18.5	99	71.012	ENSAPEG00000006751	si:ch211-212k18.5	99	71.232	Amphiprion_percula
ENSCSEG00000004426	si:ch211-212k18.5	55	47.219	ENSAPEG00000020215	sall2	66	49.440	Amphiprion_percula
ENSCSEG00000004426	si:ch211-212k18.5	66	46.506	ENSATEG00000007303	sall2	57	48.878	Anabas_testudineus
ENSCSEG00000004426	si:ch211-212k18.5	76	82.105	ENSATEG00000001254	si:ch211-212k18.5	99	82.456	Anabas_testudineus
ENSCSEG00000004426	si:ch211-212k18.5	99	70.364	ENSACLG00000009709	si:ch211-212k18.5	99	70.283	Astatotilapia_calliptera
ENSCSEG00000004426	si:ch211-212k18.5	98	54.582	ENSAMXG00000010979	si:ch211-212k18.5	99	53.431	Astyanax_mexicanus
ENSCSEG00000004426	si:ch211-212k18.5	61	48.459	ENSAMXG00000020956	sall2	64	48.252	Astyanax_mexicanus
ENSCSEG00000004426	si:ch211-212k18.5	58	71.875	ENSCVAG00000006032	sall2	62	71.875	Cyprinodon_variegatus
ENSCSEG00000004426	si:ch211-212k18.5	100	67.153	ENSCVAG00000007475	si:ch211-212k18.5	100	66.937	Cyprinodon_variegatus
ENSCSEG00000004426	si:ch211-212k18.5	96	54.052	ENSDARG00000103316	si:ch211-212k18.5	70	52.189	Danio_rerio
ENSCSEG00000004426	si:ch211-212k18.5	62	49.644	ENSDARG00000075116	sall2	64	49.502	Danio_rerio
ENSCSEG00000004426	si:ch211-212k18.5	99	55.476	ENSELUG00000024534	si:ch211-212k18.5	99	55.901	Esox_lucius
ENSCSEG00000004426	si:ch211-212k18.5	70	48.254	ENSELUG00000004389	sall2	71	42.673	Esox_lucius
ENSCSEG00000004426	si:ch211-212k18.5	61	71.875	ENSFHEG00000017550	sall2	63	71.875	Fundulus_heteroclitus
ENSCSEG00000004426	si:ch211-212k18.5	100	67.666	ENSFHEG00000017264	si:ch211-212k18.5	100	67.423	Fundulus_heteroclitus
ENSCSEG00000004426	si:ch211-212k18.5	60	57.407	ENSGAFG00000015194	sall2	54	47.284	Gambusia_affinis
ENSCSEG00000004426	si:ch211-212k18.5	99	67.561	ENSGAFG00000003746	si:ch211-212k18.5	99	68.211	Gambusia_affinis
ENSCSEG00000004426	si:ch211-212k18.5	99	70.607	ENSHBUG00000019672	si:ch211-212k18.5	99	71.159	Haplochromis_burtoni
ENSCSEG00000004426	si:ch211-212k18.5	97	59.534	ENSHCOG00000002842	si:ch211-212k18.5	99	59.716	Hippocampus_comes
ENSCSEG00000004426	si:ch211-212k18.5	99	53.218	ENSIPUG00000002559	sall2	99	50.827	Ictalurus_punctatus
ENSCSEG00000004426	si:ch211-212k18.5	99	68.795	ENSKMAG00000019657	si:ch211-212k18.5	99	70.113	Kryptolebias_marmoratus
ENSCSEG00000004426	si:ch211-212k18.5	81	39.792	ENSKMAG00000020172	sall2	76	38.993	Kryptolebias_marmoratus
ENSCSEG00000004426	si:ch211-212k18.5	99	70.641	ENSLBEG00000020887	si:ch211-212k18.5	99	70.665	Labrus_bergylta
ENSCSEG00000004426	si:ch211-212k18.5	71	82.735	ENSMAMG00000015887	si:ch211-212k18.5	99	81.439	Mastacembelus_armatus
ENSCSEG00000004426	si:ch211-212k18.5	99	70.526	ENSMZEG00005021214	si:ch211-212k18.5	99	70.445	Maylandia_zebra
ENSCSEG00000004426	si:ch211-212k18.5	92	78.499	ENSMMOG00000012726	si:ch211-212k18.5	99	78.387	Mola_mola
ENSCSEG00000004426	si:ch211-212k18.5	94	72.616	ENSMALG00000000979	si:ch211-212k18.5	97	72.966	Monopterus_albus
ENSCSEG00000004426	si:ch211-212k18.5	70	45.295	ENSNBRG00000017645	sall2	50	50.607	Neolamprologus_brichardi
ENSCSEG00000004426	si:ch211-212k18.5	94	67.444	ENSNBRG00000023948	si:ch211-212k18.5	96	67.498	Neolamprologus_brichardi
ENSCSEG00000004426	si:ch211-212k18.5	99	66.667	ENSORLG00000030429	si:ch211-212k18.5	99	67.105	Oryzias_latipes
ENSCSEG00000004426	si:ch211-212k18.5	99	66.448	ENSORLG00020008145	si:ch211-212k18.5	99	66.749	Oryzias_latipes_hni
ENSCSEG00000004426	si:ch211-212k18.5	99	66.419	ENSORLG00015004982	si:ch211-212k18.5	99	66.914	Oryzias_latipes_hsok
ENSCSEG00000004426	si:ch211-212k18.5	99	66.228	ENSOMEG00000013949	si:ch211-212k18.5	99	66.557	Oryzias_melastigma
ENSCSEG00000004426	si:ch211-212k18.5	62	55.769	ENSOMEG00000012904	sall2	54	47.500	Oryzias_melastigma
ENSCSEG00000004426	si:ch211-212k18.5	94	63.240	ENSPMGG00000018714	si:ch211-212k18.5	99	63.558	Periophthalmus_magnuspinnatus
ENSCSEG00000004426	si:ch211-212k18.5	60	57.407	ENSPFOG00000016504	sall2	61	46.257	Poecilia_formosa
ENSCSEG00000004426	si:ch211-212k18.5	99	68.160	ENSPFOG00000023705	si:ch211-212k18.5	99	69.561	Poecilia_formosa
ENSCSEG00000004426	si:ch211-212k18.5	60	57.407	ENSPLAG00000018320	sall2	54	47.687	Poecilia_latipinna
ENSCSEG00000004426	si:ch211-212k18.5	99	68.078	ENSPLAG00000002577	si:ch211-212k18.5	99	68.123	Poecilia_latipinna
ENSCSEG00000004426	si:ch211-212k18.5	60	57.407	ENSPMEG00000006335	sall2	54	48.718	Poecilia_mexicana
ENSCSEG00000004426	si:ch211-212k18.5	99	67.997	ENSPMEG00000016395	si:ch211-212k18.5	99	69.390	Poecilia_mexicana
ENSCSEG00000004426	si:ch211-212k18.5	99	68.042	ENSPREG00000005292	si:ch211-212k18.5	99	68.204	Poecilia_reticulata
ENSCSEG00000004426	si:ch211-212k18.5	59	57.407	ENSPREG00000021908	sall2	53	48.377	Poecilia_reticulata
ENSCSEG00000004426	si:ch211-212k18.5	99	67.153	ENSPNYG00000021576	si:ch211-212k18.5	99	67.640	Pundamilia_nyererei
ENSCSEG00000004426	si:ch211-212k18.5	96	56.050	ENSPNAG00000006123	si:ch211-212k18.5	94	56.255	Pygocentrus_nattereri
ENSCSEG00000004426	si:ch211-212k18.5	99	73.582	ENSSMAG00000006241	si:ch211-212k18.5	99	73.441	Scophthalmus_maximus
ENSCSEG00000004426	si:ch211-212k18.5	70	43.845	ENSSDUG00000012274	sall2	67	52.239	Seriola_dumerili
ENSCSEG00000004426	si:ch211-212k18.5	99	75.667	ENSSDUG00000006164	si:ch211-212k18.5	99	75.990	Seriola_dumerili
ENSCSEG00000004426	si:ch211-212k18.5	70	44.196	ENSSLDG00000001653	sall2	67	52.239	Seriola_lalandi_dorsalis
ENSCSEG00000004426	si:ch211-212k18.5	99	77.607	ENSSLDG00000003393	si:ch211-212k18.5	99	77.688	Seriola_lalandi_dorsalis
ENSCSEG00000004426	si:ch211-212k18.5	94	73.293	ENSSPAG00000013435	si:ch211-212k18.5	97	72.947	Stegastes_partitus
ENSCSEG00000004426	si:ch211-212k18.5	81	37.676	ENSTRUG00000024556	sall2	60	46.053	Takifugu_rubripes
ENSCSEG00000004426	si:ch211-212k18.5	89	73.007	ENSTRUG00000025082	si:ch211-212k18.5	96	74.002	Takifugu_rubripes
ENSCSEG00000004426	si:ch211-212k18.5	99	65.822	ENSXCOG00000000762	si:ch211-212k18.5	99	66.774	Xiphophorus_couchianus
ENSCSEG00000004426	si:ch211-212k18.5	99	67.866	ENSXMAG00000001461	si:ch211-212k18.5	99	68.553	Xiphophorus_maculatus
ENSCSEG00000004426	si:ch211-212k18.5	60	57.407	ENSXMAG00000000902	sall2	50	75.000	Xiphophorus_maculatus