EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000004489 (Gene tree)
Gene ID: -
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 37723 bases
Position: chr1:27234792-27272514
Accession: 103388059
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000007044	ResIII	PF04851.15	4.2e-07	1	1
ENSCSEP00000007005	ResIII	PF04851.15	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000007080	-	5337	XM_017033938	ENSCSEP00000007005	1778 (aa)	XP_016889433	-
ENSCSET00000007119	-	5292	-	ENSCSEP00000007044	1763 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000004489's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000004489's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000004489	chd3	93	78.829	ENSCSEG00000017173	chd4a	93	66.249
ENSCSEG00000004489	chd3	94	73.106	ENSCSEG00000018096	-	93	68.406
ENSCSEG00000004489	chd3	90	77.523	ENSCSEG00000019943	-	90	77.523

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000004489	chd3	99	76.156	ENSG00000170004	CHD3	91	79.605	Homo_sapiens
ENSCSEG00000004489	chd3	90	88.041	ENSAPOG00000005614	chd3	93	92.800	Acanthochromis_polyacanthus
ENSCSEG00000004489	chd3	70	82.604	ENSAMEG00000003025	-	95	76.085	Ailuropoda_melanoleuca
ENSCSEG00000004489	chd3	90	87.142	ENSACIG00000019671	chd3	99	89.139	Amphilophus_citrinellus
ENSCSEG00000004489	chd3	100	91.336	ENSAOCG00000023784	chd3	99	87.750	Amphiprion_ocellaris
ENSCSEG00000004489	chd3	100	91.270	ENSAPEG00000006341	chd3	91	88.107	Amphiprion_percula
ENSCSEG00000004489	chd3	100	90.476	ENSATEG00000000848	chd3	99	84.245	Anabas_testudineus
ENSCSEG00000004489	chd3	98	81.145	ENSACAG00000004276	CHD3	86	81.145	Anolis_carolinensis
ENSCSEG00000004489	chd3	97	76.976	ENSANAG00000034323	CHD3	92	79.605	Aotus_nancymaae
ENSCSEG00000004489	chd3	100	89.608	ENSACLG00000009222	chd3	99	88.847	Astatotilapia_calliptera
ENSCSEG00000004489	chd3	98	78.114	ENSBTAG00000014377	CHD3	88	83.712	Bos_taurus
ENSCSEG00000004489	chd3	99	76.090	ENSCJAG00000014766	CHD3	91	79.605	Callithrix_jacchus
ENSCSEG00000004489	chd3	99	76.090	ENSCAFG00000016859	CHD3	89	79.605	Canis_familiaris
ENSCSEG00000004489	chd3	97	77.732	ENSCAFG00020007422	CHD3	93	79.605	Canis_lupus_dingo
ENSCSEG00000004489	chd3	99	77.116	ENSCHIG00000016737	CHD3	90	79.605	Capra_hircus
ENSCSEG00000004489	chd3	99	76.156	ENSTSYG00000035658	CHD3	85	85.776	Carlito_syrichta
ENSCSEG00000004489	chd3	99	75.595	ENSCAPG00000014864	CHD3	89	79.868	Cavia_aperea
ENSCSEG00000004489	chd3	99	76.024	ENSCPOG00000022653	CHD3	83	86.147	Cavia_porcellus
ENSCSEG00000004489	chd3	99	76.156	ENSCCAG00000034792	CHD3	89	79.605	Cebus_capucinus
ENSCSEG00000004489	chd3	99	76.090	ENSCATG00000041717	CHD3	91	79.605	Cercocebus_atys
ENSCSEG00000004489	chd3	99	76.090	ENSCLAG00000010523	CHD3	92	79.868	Chinchilla_lanigera
ENSCSEG00000004489	chd3	99	76.093	ENSCSAG00000011122	CHD3	95	77.044	Chlorocebus_sabaeus
ENSCSEG00000004489	chd3	89	93.151	ENSCPBG00000011966	CHD3	92	90.667	Chrysemys_picta_bellii
ENSCSEG00000004489	chd3	99	76.090	ENSCANG00000037641	CHD3	92	79.605	Colobus_angolensis_palliatus
ENSCSEG00000004489	chd3	99	75.529	ENSCGRG00001011306	Chd3	92	79.868	Cricetulus_griseus_chok1gshd
ENSCSEG00000004489	chd3	99	74.846	ENSCGRG00000007878	Chd3	85	77.070	Cricetulus_griseus_crigri
ENSCSEG00000004489	chd3	99	86.571	ENSCVAG00000007293	chd3	99	86.429	Cyprinodon_variegatus
ENSCSEG00000004489	chd3	98	85.608	ENSDARG00000021405	chd3	99	83.243	Danio_rerio
ENSCSEG00000004489	chd3	90	84.039	ENSDNOG00000047846	CHD3	77	83.434	Dasypus_novemcinctus
ENSCSEG00000004489	chd3	98	79.801	ENSDORG00000010713	Chd3	92	79.801	Dipodomys_ordii
ENSCSEG00000004489	chd3	98	76.689	ENSETEG00000017733	CHD3	90	82.197	Echinops_telfairi
ENSCSEG00000004489	chd3	73	86.730	ENSEBUG00000008310	chd3	97	66.800	Eptatretus_burgeri
ENSCSEG00000004489	chd3	95	78.076	ENSEASG00005019360	CHD3	92	79.934	Equus_asinus_asinus
ENSCSEG00000004489	chd3	95	78.076	ENSECAG00000010051	CHD3	92	79.934	Equus_caballus
ENSCSEG00000004489	chd3	88	80.634	ENSEEUG00000015205	CHD3	81	89.691	Erinaceus_europaeus
ENSCSEG00000004489	chd3	84	97.279	ENSELUG00000019499	chd3	99	97.279	Esox_lucius
ENSCSEG00000004489	chd3	99	76.222	ENSFCAG00000009629	CHD3	87	78.947	Felis_catus
ENSCSEG00000004489	chd3	97	77.579	ENSFDAG00000008220	CHD3	84	86.147	Fukomys_damarensis
ENSCSEG00000004489	chd3	94	89.030	ENSGMOG00000013599	chd3	86	89.030	Gadus_morhua
ENSCSEG00000004489	chd3	63	88.451	ENSGAFG00000004055	chd3	99	89.151	Gambusia_affinis
ENSCSEG00000004489	chd3	100	87.500	ENSGACG00000019275	chd3	92	87.500	Gasterosteus_aculeatus
ENSCSEG00000004489	chd3	74	88.679	ENSGAGG00000013164	CHD3	90	88.679	Gopherus_agassizii
ENSCSEG00000004489	chd3	99	76.090	ENSGGOG00000013496	CHD3	92	79.605	Gorilla_gorilla
ENSCSEG00000004489	chd3	99	75.892	ENSHGLG00000012017	CHD3	90	79.868	Heterocephalus_glaber_female
ENSCSEG00000004489	chd3	88	84.490	ENSHGLG00100013902	CHD3	91	82.449	Heterocephalus_glaber_male
ENSCSEG00000004489	chd3	99	86.196	ENSHCOG00000010170	chd3	90	86.724	Hippocampus_comes
ENSCSEG00000004489	chd3	91	83.190	ENSIPUG00000003271	chd3	93	83.170	Ictalurus_punctatus
ENSCSEG00000004489	chd3	99	76.156	ENSSTOG00000025907	CHD3	92	79.868	Ictidomys_tridecemlineatus
ENSCSEG00000004489	chd3	98	79.605	ENSJJAG00000017633	Chd3	92	79.605	Jaculus_jaculus
ENSCSEG00000004489	chd3	99	89.077	ENSKMAG00000019292	chd3	100	89.231	Kryptolebias_marmoratus
ENSCSEG00000004489	chd3	99	86.292	ENSLBEG00000028485	chd3	93	86.348	Labrus_bergylta
ENSCSEG00000004489	chd3	98	73.329	ENSLACG00000008031	CHD3	92	72.923	Latimeria_chalumnae
ENSCSEG00000004489	chd3	100	82.477	ENSLOCG00000013965	chd3	88	82.477	Lepisosteus_oculatus
ENSCSEG00000004489	chd3	96	80.556	ENSLAFG00000000572	CHD3	85	91.589	Loxodonta_africana
ENSCSEG00000004489	chd3	99	76.090	ENSMFAG00000020113	CHD3	92	79.605	Macaca_fascicularis
ENSCSEG00000004489	chd3	99	75.224	ENSMMUG00000022221	CHD3	90	78.878	Macaca_mulatta
ENSCSEG00000004489	chd3	99	76.090	ENSMNEG00000001728	CHD3	92	79.605	Macaca_nemestrina
ENSCSEG00000004489	chd3	99	76.090	ENSMLEG00000032249	CHD3	91	79.605	Mandrillus_leucophaeus
ENSCSEG00000004489	chd3	87	92.153	ENSMAMG00000000564	chd3	97	90.988	Mastacembelus_armatus
ENSCSEG00000004489	chd3	99	75.529	ENSMAUG00000013873	Chd3	90	79.868	Mesocricetus_auratus
ENSCSEG00000004489	chd3	99	76.288	ENSMICG00000008741	CHD3	89	79.538	Microcebus_murinus
ENSCSEG00000004489	chd3	99	75.529	ENSMOCG00000004848	Chd3	92	79.868	Microtus_ochrogaster
ENSCSEG00000004489	chd3	98	90.941	ENSMMOG00000012699	chd3	95	90.941	Mola_mola
ENSCSEG00000004489	chd3	94	79.208	ENSMODG00000007509	CHD3	94	79.208	Monodelphis_domestica
ENSCSEG00000004489	chd3	98	78.351	MGP_CAROLIEiJ_G0016564	Chd3	93	83.650	Mus_caroli
ENSCSEG00000004489	chd3	98	78.351	ENSMUSG00000018474	Chd3	92	83.650	Mus_musculus
ENSCSEG00000004489	chd3	98	78.351	MGP_PahariEiJ_G0017695	Chd3	92	83.650	Mus_pahari
ENSCSEG00000004489	chd3	98	78.351	MGP_SPRETEiJ_G0017400	Chd3	92	83.650	Mus_spretus
ENSCSEG00000004489	chd3	89	79.286	ENSMPUG00000008861	CHD3	91	77.107	Mustela_putorius_furo
ENSCSEG00000004489	chd3	99	75.578	ENSMLUG00000014643	-	89	80.328	Myotis_lucifugus
ENSCSEG00000004489	chd3	99	75.826	ENSNGAG00000000773	Chd3	89	79.868	Nannospalax_galili
ENSCSEG00000004489	chd3	91	87.219	ENSNBRG00000000636	chd3	98	87.523	Neolamprologus_brichardi
ENSCSEG00000004489	chd3	96	82.996	ENSNLEG00000009770	CHD3	90	82.996	Nomascus_leucogenys
ENSCSEG00000004489	chd3	90	80.066	ENSMEUG00000005852	CHD3	84	80.066	Notamacropus_eugenii
ENSCSEG00000004489	chd3	95	77.741	ENSOPRG00000011069	CHD3	92	77.741	Ochotona_princeps
ENSCSEG00000004489	chd3	99	76.008	ENSODEG00000017785	CHD3	90	79.868	Octodon_degus
ENSCSEG00000004489	chd3	98	91.096	ENSONIG00000009292	chd3	92	91.096	Oreochromis_niloticus
ENSCSEG00000004489	chd3	99	75.016	ENSOCUG00000029299	CHD3	91	72.973	Oryctolagus_cuniculus
ENSCSEG00000004489	chd3	87	88.384	ENSORLG00000007107	chd3	93	88.125	Oryzias_latipes
ENSCSEG00000004489	chd3	62	85.103	ENSORLG00020008387	chd3	92	92.614	Oryzias_latipes_hni
ENSCSEG00000004489	chd3	88	90.706	ENSOMEG00000013691	chd3	99	86.006	Oryzias_melastigma
ENSCSEG00000004489	chd3	99	76.288	ENSOGAG00000003216	CHD3	91	79.276	Otolemur_garnettii
ENSCSEG00000004489	chd3	99	75.719	ENSOARG00000017855	CHD3	89	76.144	Ovis_aries
ENSCSEG00000004489	chd3	99	74.481	ENSPPAG00000032886	CHD3	92	78.457	Pan_paniscus
ENSCSEG00000004489	chd3	99	76.222	ENSPPRG00000000626	CHD3	91	79.276	Panthera_pardus
ENSCSEG00000004489	chd3	99	76.156	ENSPTRG00000008714	CHD3	92	79.605	Pan_troglodytes
ENSCSEG00000004489	chd3	99	76.090	ENSPANG00000023938	CHD3	92	79.605	Papio_anubis
ENSCSEG00000004489	chd3	100	86.196	ENSPKIG00000006305	chd3	94	85.930	Paramormyrops_kingsleyae
ENSCSEG00000004489	chd3	58	81.161	ENSPSIG00000010177	CHD3	97	78.300	Pelodiscus_sinensis
ENSCSEG00000004489	chd3	99	75.116	ENSPEMG00000014262	Chd3	90	79.538	Peromyscus_maniculatus_bairdii
ENSCSEG00000004489	chd3	96	82.573	ENSPCIG00000005442	CHD3	89	87.054	Phascolarctos_cinereus
ENSCSEG00000004489	chd3	98	91.438	ENSPFOG00000012464	chd3	83	91.438	Poecilia_formosa
ENSCSEG00000004489	chd3	98	87.402	ENSPLAG00000002887	chd3	94	90.952	Poecilia_latipinna
ENSCSEG00000004489	chd3	60	85.914	ENSPMEG00000016725	chd3	91	87.593	Poecilia_mexicana
ENSCSEG00000004489	chd3	98	88.612	ENSPREG00000011044	chd3	97	87.625	Poecilia_reticulata
ENSCSEG00000004489	chd3	99	75.522	ENSPPYG00000007940	CHD3	91	79.605	Pongo_abelii
ENSCSEG00000004489	chd3	96	82.391	ENSPCAG00000004350	CHD3	87	81.750	Procavia_capensis
ENSCSEG00000004489	chd3	99	76.288	ENSPCOG00000020952	CHD3	86	85.776	Propithecus_coquereli
ENSCSEG00000004489	chd3	82	83.491	ENSPVAG00000016344	CHD3	68	90.826	Pteropus_vampyrus
ENSCSEG00000004489	chd3	100	86.503	ENSPNAG00000020393	chd3	98	85.503	Pygocentrus_nattereri
ENSCSEG00000004489	chd3	95	77.385	ENSRNOG00000009722	Chd3	92	79.344	Rattus_norvegicus
ENSCSEG00000004489	chd3	99	75.455	ENSRBIG00000033562	CHD3	90	76.743	Rhinopithecus_bieti
ENSCSEG00000004489	chd3	99	76.090	ENSRROG00000029554	CHD3	92	79.605	Rhinopithecus_roxellana
ENSCSEG00000004489	chd3	99	76.156	ENSSBOG00000020719	CHD3	92	79.605	Saimiri_boliviensis_boliviensis
ENSCSEG00000004489	chd3	99	74.211	ENSSHAG00000014412	CHD3	93	79.208	Sarcophilus_harrisii
ENSCSEG00000004489	chd3	89	92.424	ENSSFOG00015023123	chd3	89	92.424	Scleropages_formosus
ENSCSEG00000004489	chd3	93	93.688	ENSSMAG00000006451	chd3	99	87.546	Scophthalmus_maximus
ENSCSEG00000004489	chd3	60	86.017	ENSSDUG00000005792	chd3	96	86.973	Seriola_dumerili
ENSCSEG00000004489	chd3	98	91.336	ENSSPAG00000013694	chd3	99	87.679	Stegastes_partitus
ENSCSEG00000004489	chd3	95	81.967	ENSSSCG00000021363	CHD3	90	87.349	Sus_scrofa
ENSCSEG00000004489	chd3	81	90.593	ENSTRUG00000014990	chd3	89	90.631	Takifugu_rubripes
ENSCSEG00000004489	chd3	99	89.877	ENSTNIG00000012998	chd3	94	89.877	Tetraodon_nigroviridis
ENSCSEG00000004489	chd3	64	89.691	ENSTBEG00000011454	-	65	87.755	Tupaia_belangeri
ENSCSEG00000004489	chd3	99	80.000	ENSTTRG00000010295	CHD3	89	76.021	Tursiops_truncatus
ENSCSEG00000004489	chd3	98	73.798	ENSUAMG00000005475	CHD3	93	88.208	Ursus_americanus
ENSCSEG00000004489	chd3	54	95.349	ENSVPAG00000010794	-	55	96.078	Vicugna_pacos
ENSCSEG00000004489	chd3	97	77.732	ENSVVUG00000028011	CHD3	91	79.605	Vulpes_vulpes
ENSCSEG00000004489	chd3	95	82.031	ENSXETG00000012991	chd3	88	69.626	Xenopus_tropicalis
ENSCSEG00000004489	chd3	64	87.072	ENSXCOG00000000809	chd3	96	86.044	Xiphophorus_couchianus
ENSCSEG00000004489	chd3	86	91.099	ENSXMAG00000016035	chd3	99	91.099	Xiphophorus_maculatus