EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000004701 (Gene tree)
Gene ID: 103386093
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 12431 bases
Position: chr11:5772257-5784687
Accession: 103386093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000007284	RRM_1	PF00076.22	5.2e-17	1	1
ENSCSEP00000007283	RRM_1	PF00076.22	5.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000007361	-	872	XM_008320201	ENSCSEP00000007283	242 (aa)	XP_008318423	UPI0004976388
ENSCSET00000007362	-	684	-	ENSCSEP00000007284	227 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000004701's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000004701's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000004701	-	80	62.500	ENSCSEG00000020943	rbm38	61	64.324
ENSCSEG00000004701	-	67	70.513	ENSCSEG00000017958	rbm24a	100	61.373
ENSCSEG00000004701	-	68	69.325	ENSCSEG00000004378	rbm24b	92	58.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000004701	-	93	71.818	ENSG00000132819	RBM38	94	86.441	Homo_sapiens
ENSCSEG00000004701	-	100	64.173	ENSAPOG00000003301	rbm38	98	64.143	Acanthochromis_polyacanthus
ENSCSEG00000004701	-	100	91.393	ENSAPOG00000009939	-	100	91.393	Acanthochromis_polyacanthus
ENSCSEG00000004701	-	100	90.164	ENSACIG00000012502	-	100	94.068	Amphilophus_citrinellus
ENSCSEG00000004701	-	100	63.386	ENSACIG00000000010	rbm38	98	62.698	Amphilophus_citrinellus
ENSCSEG00000004701	-	100	64.567	ENSAOCG00000013497	-	98	64.542	Amphiprion_ocellaris
ENSCSEG00000004701	-	97	91.139	ENSAOCG00000012559	RBM38	100	91.139	Amphiprion_ocellaris
ENSCSEG00000004701	-	100	64.567	ENSAPEG00000013137	rbm38	98	64.542	Amphiprion_percula
ENSCSEG00000004701	-	100	90.984	ENSAPEG00000023581	-	100	90.984	Amphiprion_percula
ENSCSEG00000004701	-	100	92.623	ENSATEG00000016710	-	100	92.623	Anabas_testudineus
ENSCSEG00000004701	-	100	63.137	ENSATEG00000016366	rbm38	98	63.492	Anabas_testudineus
ENSCSEG00000004701	-	95	67.382	ENSACAG00000016238	RBM38	88	67.742	Anolis_carolinensis
ENSCSEG00000004701	-	93	72.727	ENSANAG00000031959	RBM38	78	93.617	Aotus_nancymaae
ENSCSEG00000004701	-	100	89.344	ENSACLG00000019514	-	100	89.344	Astatotilapia_calliptera
ENSCSEG00000004701	-	100	77.273	ENSAMXG00000015601	-	100	75.820	Astyanax_mexicanus
ENSCSEG00000004701	-	98	63.900	ENSAMXG00000038120	rbm38	92	66.972	Astyanax_mexicanus
ENSCSEG00000004701	-	93	70.776	ENSBTAG00000008105	RBM38	89	70.183	Bos_taurus
ENSCSEG00000004701	-	74	55.618	WBGene00006321	sup-12	59	82.022	Caenorhabditis_elegans
ENSCSEG00000004701	-	93	72.727	ENSCJAG00000019139	RBM38	78	93.617	Callithrix_jacchus
ENSCSEG00000004701	-	93	70.776	ENSCAFG00020021943	RBM38	89	70.183	Canis_lupus_dingo
ENSCSEG00000004701	-	93	69.406	ENSCHIG00000002609	RBM38	89	68.807	Capra_hircus
ENSCSEG00000004701	-	93	70.909	ENSCPOG00000012781	RBM38	89	70.320	Cavia_porcellus
ENSCSEG00000004701	-	93	72.727	ENSCCAG00000036872	RBM38	78	93.617	Cebus_capucinus
ENSCSEG00000004701	-	93	70.968	ENSCATG00000032133	RBM38	78	93.617	Cercocebus_atys
ENSCSEG00000004701	-	93	70.909	ENSCLAG00000005906	RBM38	92	69.863	Chinchilla_lanigera
ENSCSEG00000004701	-	93	70.968	ENSCSAG00000015503	RBM38	89	70.370	Chlorocebus_sabaeus
ENSCSEG00000004701	-	94	71.493	ENSCPBG00000024059	RBM38	100	68.807	Chrysemys_picta_bellii
ENSCSEG00000004701	-	66	65.385	ENSCSAVG00000001132	-	51	70.588	Ciona_savignyi
ENSCSEG00000004701	-	93	55.349	ENSCANG00000030105	-	78	53.488	Colobus_angolensis_palliatus
ENSCSEG00000004701	-	96	65.333	ENSCGRG00001012928	Rbm38	93	67.544	Cricetulus_griseus_chok1gshd
ENSCSEG00000004701	-	99	61.355	ENSCVAG00000015952	rbm38	98	63.347	Cyprinodon_variegatus
ENSCSEG00000004701	-	100	86.475	ENSCVAG00000005472	-	100	86.475	Cyprinodon_variegatus
ENSCSEG00000004701	-	99	70.782	ENSDARG00000058818	rbm38	94	70.982	Danio_rerio
ENSCSEG00000004701	-	93	71.028	ENSDNOG00000032004	RBM38	98	69.953	Dasypus_novemcinctus
ENSCSEG00000004701	-	93	69.863	ENSECAG00000007700	RBM38	89	68.807	Equus_caballus
ENSCSEG00000004701	-	93	69.231	ENSEEUG00000013489	RBM38	89	69.545	Erinaceus_europaeus
ENSCSEG00000004701	-	88	67.281	ENSELUG00000000585	-	98	64.000	Esox_lucius
ENSCSEG00000004701	-	100	79.116	ENSELUG00000005849	-	100	78.313	Esox_lucius
ENSCSEG00000004701	-	93	67.890	ENSFCAG00000042916	RBM38	78	92.553	Felis_catus
ENSCSEG00000004701	-	78	76.111	ENSFALG00000010805	RBM38	94	73.077	Ficedula_albicollis
ENSCSEG00000004701	-	100	81.048	ENSFHEG00000006160	-	100	81.452	Fundulus_heteroclitus
ENSCSEG00000004701	-	100	63.889	ENSFHEG00000017748	rbm38	98	63.347	Fundulus_heteroclitus
ENSCSEG00000004701	-	78	84.916	ENSGMOG00000016655	-	98	81.522	Gadus_morhua
ENSCSEG00000004701	-	94	70.721	ENSGALG00000026081	RBM38	100	68.778	Gallus_gallus
ENSCSEG00000004701	-	93	70.561	ENSGACG00000015224	rbm38	99	70.561	Gasterosteus_aculeatus
ENSCSEG00000004701	-	93	88.679	ENSGACG00000009873	-	98	88.679	Gasterosteus_aculeatus
ENSCSEG00000004701	-	94	71.041	ENSGAGG00000001187	RBM38	100	68.807	Gopherus_agassizii
ENSCSEG00000004701	-	100	64.286	ENSHBUG00000012058	rbm38	98	64.940	Haplochromis_burtoni
ENSCSEG00000004701	-	100	89.344	ENSHBUG00000011778	-	100	89.344	Haplochromis_burtoni
ENSCSEG00000004701	-	93	67.580	ENSHGLG00000015077	RBM38	89	69.406	Heterocephalus_glaber_female
ENSCSEG00000004701	-	86	88.889	ENSHCOG00000005622	-	57	89.447	Hippocampus_comes
ENSCSEG00000004701	-	97	48.583	ENSHCOG00000019040	rbm38	78	54.082	Hippocampus_comes
ENSCSEG00000004701	-	100	72.245	ENSIPUG00000019349	-	100	71.020	Ictalurus_punctatus
ENSCSEG00000004701	-	92	59.307	ENSKMAG00000012402	rbm38	98	59.307	Kryptolebias_marmoratus
ENSCSEG00000004701	-	100	63.137	ENSLBEG00000018878	rbm38	98	62.353	Labrus_bergylta
ENSCSEG00000004701	-	100	87.903	ENSLBEG00000016163	RBM38	100	87.903	Labrus_bergylta
ENSCSEG00000004701	-	100	73.361	ENSLOCG00000003456	rbm38	100	73.361	Lepisosteus_oculatus
ENSCSEG00000004701	-	93	70.968	ENSMFAG00000043808	RBM38	78	93.617	Macaca_fascicularis
ENSCSEG00000004701	-	93	70.968	ENSMMUG00000031391	RBM38	78	93.617	Macaca_mulatta
ENSCSEG00000004701	-	93	70.968	ENSMNEG00000034683	RBM38	78	93.617	Macaca_nemestrina
ENSCSEG00000004701	-	100	89.344	ENSMAMG00000020499	RBM38	100	89.344	Mastacembelus_armatus
ENSCSEG00000004701	-	100	64.683	ENSMAMG00000024135	rbm38	98	63.095	Mastacembelus_armatus
ENSCSEG00000004701	-	100	64.286	ENSMZEG00005026036	rbm38	98	64.940	Maylandia_zebra
ENSCSEG00000004701	-	100	89.344	ENSMZEG00005000849	-	100	89.344	Maylandia_zebra
ENSCSEG00000004701	-	96	66.667	ENSMAUG00000021211	Rbm38	93	68.860	Mesocricetus_auratus
ENSCSEG00000004701	-	93	71.364	ENSMICG00000038011	RBM38	98	70.320	Microcebus_murinus
ENSCSEG00000004701	-	96	66.222	ENSMOCG00000008715	Rbm38	93	68.421	Microtus_ochrogaster
ENSCSEG00000004701	-	100	90.574	ENSMMOG00000020051	-	100	90.574	Mola_mola
ENSCSEG00000004701	-	94	70.320	ENSMODG00000016458	RBM38	92	68.807	Monodelphis_domestica
ENSCSEG00000004701	-	100	57.787	ENSMALG00000022327	rbm38	91	60.268	Monopterus_albus
ENSCSEG00000004701	-	78	94.382	ENSMALG00000004680	RBM38	72	93.122	Monopterus_albus
ENSCSEG00000004701	-	96	66.228	MGP_CAROLIEiJ_G0024745	Rbm38	93	68.421	Mus_caroli
ENSCSEG00000004701	-	96	66.228	ENSMUSG00000027510	Rbm38	93	68.421	Mus_musculus
ENSCSEG00000004701	-	96	65.789	MGP_PahariEiJ_G0026186	Rbm38	93	67.982	Mus_pahari
ENSCSEG00000004701	-	96	66.228	MGP_SPRETEiJ_G0025665	Rbm38	93	68.421	Mus_spretus
ENSCSEG00000004701	-	78	74.725	ENSMPUG00000006518	RBM38	89	74.586	Mustela_putorius_furo
ENSCSEG00000004701	-	93	69.863	ENSMLUG00000011140	RBM38	98	68.807	Myotis_lucifugus
ENSCSEG00000004701	-	100	89.754	ENSNBRG00000022545	-	100	89.754	Neolamprologus_brichardi
ENSCSEG00000004701	-	100	64.683	ENSNBRG00000022685	rbm38	98	65.339	Neolamprologus_brichardi
ENSCSEG00000004701	-	56	72.519	ENSMEUG00000005475	-	98	72.519	Notamacropus_eugenii
ENSCSEG00000004701	-	93	71.818	ENSODEG00000007980	RBM38	89	71.233	Octodon_degus
ENSCSEG00000004701	-	99	89.712	ENSONIG00000020324	-	100	89.712	Oreochromis_niloticus
ENSCSEG00000004701	-	99	64.542	ENSONIG00000017073	rbm38	100	65.200	Oreochromis_niloticus
ENSCSEG00000004701	-	93	71.028	ENSOANG00000009259	RBM38	81	69.811	Ornithorhynchus_anatinus
ENSCSEG00000004701	-	100	58.730	ENSORLG00000012154	rbm38	98	57.937	Oryzias_latipes
ENSCSEG00000004701	-	100	84.959	ENSORLG00000027180	-	100	85.366	Oryzias_latipes
ENSCSEG00000004701	-	100	58.661	ENSORLG00020017871	rbm38	98	57.937	Oryzias_latipes_hni
ENSCSEG00000004701	-	100	84.959	ENSORLG00020020751	-	100	85.366	Oryzias_latipes_hni
ENSCSEG00000004701	-	100	86.122	ENSORLG00015017040	-	100	86.122	Oryzias_latipes_hsok
ENSCSEG00000004701	-	99	61.304	ENSORLG00015012606	rbm38	98	57.937	Oryzias_latipes_hsok
ENSCSEG00000004701	-	100	87.705	ENSOMEG00000023912	-	100	87.705	Oryzias_melastigma
ENSCSEG00000004701	-	99	60.714	ENSOMEG00000006805	rbm38	98	59.524	Oryzias_melastigma
ENSCSEG00000004701	-	93	72.273	ENSOGAG00000029136	RBM38	88	71.689	Otolemur_garnettii
ENSCSEG00000004701	-	93	67.890	ENSPPRG00000009507	RBM38	78	92.553	Panthera_pardus
ENSCSEG00000004701	-	53	87.500	ENSPTRG00000045845	-	66	87.500	Pan_troglodytes
ENSCSEG00000004701	-	78	75.824	ENSPTRG00000013661	RBM38	78	93.617	Pan_troglodytes
ENSCSEG00000004701	-	93	70.968	ENSPANG00000020919	-	78	93.617	Papio_anubis
ENSCSEG00000004701	-	98	54.148	ENSPANG00000033127	-	94	53.509	Papio_anubis
ENSCSEG00000004701	-	100	67.611	ENSPKIG00000025417	rbm38	100	67.068	Paramormyrops_kingsleyae
ENSCSEG00000004701	-	100	69.388	ENSPKIG00000018122	-	97	85.965	Paramormyrops_kingsleyae
ENSCSEG00000004701	-	100	68.803	ENSPSIG00000011649	RBM38	98	66.953	Pelodiscus_sinensis
ENSCSEG00000004701	-	99	61.200	ENSPMGG00000011343	rbm38	98	61.355	Periophthalmus_magnuspinnatus
ENSCSEG00000004701	-	100	81.048	ENSPMGG00000017094	-	100	81.048	Periophthalmus_magnuspinnatus
ENSCSEG00000004701	-	94	69.406	ENSPCIG00000013648	RBM38	92	67.431	Phascolarctos_cinereus
ENSCSEG00000004701	-	100	60.236	ENSPFOG00000011658	rbm38	98	61.417	Poecilia_formosa
ENSCSEG00000004701	-	100	60.784	ENSPLAG00000005218	rbm38	98	61.417	Poecilia_latipinna
ENSCSEG00000004701	-	100	85.772	ENSPLAG00000002500	-	100	85.772	Poecilia_latipinna
ENSCSEG00000004701	-	100	59.843	ENSPMEG00000015770	rbm38	98	61.417	Poecilia_mexicana
ENSCSEG00000004701	-	100	60.236	ENSPREG00000007398	rbm38	98	61.417	Poecilia_reticulata
ENSCSEG00000004701	-	93	70.455	ENSPCOG00000026201	RBM38	77	93.617	Propithecus_coquereli
ENSCSEG00000004701	-	93	44.444	ENSPVAG00000006457	RBM38	89	46.330	Pteropus_vampyrus
ENSCSEG00000004701	-	100	89.344	ENSPNYG00000019727	-	100	93.220	Pundamilia_nyererei
ENSCSEG00000004701	-	100	63.889	ENSPNYG00000021373	rbm38	98	64.542	Pundamilia_nyererei
ENSCSEG00000004701	-	100	75.000	ENSPNAG00000015123	-	97	81.203	Pygocentrus_nattereri
ENSCSEG00000004701	-	96	70.213	ENSPNAG00000010596	rbm38	82	78.571	Pygocentrus_nattereri
ENSCSEG00000004701	-	96	68.559	ENSRNOG00000006420	Rbm38	93	67.982	Rattus_norvegicus
ENSCSEG00000004701	-	94	59.174	ENSRROG00000036388	-	89	57.339	Rhinopithecus_roxellana
ENSCSEG00000004701	-	93	72.273	ENSSBOG00000031053	RBM38	93	89.109	Saimiri_boliviensis_boliviensis
ENSCSEG00000004701	-	100	68.163	ENSSFOG00015004453	rbm38	100	70.612	Scleropages_formosus
ENSCSEG00000004701	-	100	65.873	ENSSDUG00000022611	rbm38	98	65.079	Seriola_dumerili
ENSCSEG00000004701	-	100	90.574	ENSSDUG00000021082	RBM38	100	90.574	Seriola_dumerili
ENSCSEG00000004701	-	100	91.393	ENSSLDG00000011778	RBM38	100	91.393	Seriola_lalandi_dorsalis
ENSCSEG00000004701	-	99	67.249	ENSSLDG00000010845	rbm38	98	66.953	Seriola_lalandi_dorsalis
ENSCSEG00000004701	-	100	92.623	ENSSPAG00000020989	RBM38	100	92.623	Stegastes_partitus
ENSCSEG00000004701	-	100	64.706	ENSSPAG00000011113	rbm38	98	64.683	Stegastes_partitus
ENSCSEG00000004701	-	93	70.320	ENSSSCG00000007504	RBM38	89	69.725	Sus_scrofa
ENSCSEG00000004701	-	100	86.939	ENSTRUG00000019869	-	100	86.939	Takifugu_rubripes
ENSCSEG00000004701	-	98	61.789	ENSTRUG00000024954	rbm38	97	61.789	Takifugu_rubripes
ENSCSEG00000004701	-	93	87.097	ENSTNIG00000007093	-	98	87.097	Tetraodon_nigroviridis
ENSCSEG00000004701	-	93	68.950	ENSUAMG00000019780	RBM38	89	70.320	Ursus_americanus
ENSCSEG00000004701	-	93	70.776	ENSVVUG00000017246	RBM38	89	70.183	Vulpes_vulpes
ENSCSEG00000004701	-	95	66.953	ENSXETG00000011268	rbm38	99	65.766	Xenopus_tropicalis
ENSCSEG00000004701	-	71	75.281	ENSXCOG00000017324	-	68	81.410	Xiphophorus_couchianus
ENSCSEG00000004701	-	100	62.550	ENSXMAG00000023662	rbm38	98	63.745	Xiphophorus_maculatus