EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSEG00000004748 (Gene tree)
Gene ID
103382608
Gene Symbol
snrpf
Alias
snrpfl
Full Name
small nuclear ribonucleoprotein polypeptide F
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Minus strand
Length
4019 bases
Position
chr8:18228591-18232609
Accession
103382608
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSEP00000007362LSMPF01423.224.5e-2111
ENSCSEP00000007365LSMPF01423.226.5e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSET00000007444-2067-ENSCSEP0000000736597 (aa)--
ENSCSET00000007441-2034XM_008315459ENSCSEP0000000736286 (aa)XP_008313681UPI00049805A0
Gene Model
Click here to download ENSCSEG00000004748's gene model file
Pathways
Pathway IDPathway NameSource
csem03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000004748's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSEG00000004748snrpf7750.000ENSCSEG00000000423lsm68350.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSEG00000004748snrpf8796.000ENSG00000139343SNRPF8796.000Homo_sapiens
ENSCSEG00000004748snrpf9998.824ENSAPOG00000003377snrpf6798.837Acanthochromis_polyacanthus
ENSCSEG00000004748snrpf8695.946ENSAMEG00000002166-8795.946Ailuropoda_melanoleuca
ENSCSEG00000004748snrpf8882.895ENSAMEG00000018718-8784.000Ailuropoda_melanoleuca
ENSCSEG00000004748snrpf9898.810ENSACIG00000013216snrpf9998.810Amphilophus_citrinellus
ENSCSEG00000004748snrpf9898.810ENSAOCG00000015108snrpf9998.810Amphiprion_ocellaris
ENSCSEG00000004748snrpf9898.810ENSAPEG00000022022snrpf9998.810Amphiprion_percula
ENSCSEG00000004748snrpf9898.810ENSATEG00000022625snrpf9098.810Anabas_testudineus
ENSCSEG00000004748snrpf8694.595ENSACAG00000014073SNRPF8694.667Anolis_carolinensis
ENSCSEG00000004748snrpf8387.324ENSANAG00000020297-7580.488Aotus_nancymaae
ENSCSEG00000004748snrpf8796.000ENSANAG00000032845SNRPF8796.000Aotus_nancymaae
ENSCSEG00000004748snrpf8768.000ENSANAG00000025860-8568.000Aotus_nancymaae
ENSCSEG00000004748snrpf9898.810ENSACLG00000016066snrpf9998.810Astatotilapia_calliptera
ENSCSEG00000004748snrpf8796.000ENSAMXG00000007421snrpf8796.000Astyanax_mexicanus
ENSCSEG00000004748snrpf9189.744ENSBTAG00000050012-9389.333Bos_taurus
ENSCSEG00000004748snrpf8796.000ENSBTAG00000016271SNRPF8796.000Bos_taurus
ENSCSEG00000004748snrpf9071.429WBGene00004918snr-58573.611Caenorhabditis_elegans
ENSCSEG00000004748snrpf8796.000ENSCJAG00000002705-8796.000Callithrix_jacchus
ENSCSEG00000004748snrpf8587.671ENSCAFG00000031151-8590.411Canis_familiaris
ENSCSEG00000004748snrpf8796.000ENSCAFG00000006395-6896.000Canis_familiaris
ENSCSEG00000004748snrpf9184.615ENSCAFG00020013161-7492.857Canis_lupus_dingo
ENSCSEG00000004748snrpf8587.671ENSCAFG00020010823-8590.411Canis_lupus_dingo
ENSCSEG00000004748snrpf9490.123ENSTSYG00000031636-6191.781Carlito_syrichta
ENSCSEG00000004748snrpf8790.789ENSTSYG00000036502-8790.789Carlito_syrichta
ENSCSEG00000004748snrpf8784.000ENSTSYG00000030635-8784.000Carlito_syrichta
ENSCSEG00000004748snrpf8695.946ENSCAPG00000007242SNRPF8795.946Cavia_aperea
ENSCSEG00000004748snrpf8796.000ENSCPOG00000013898SNRPF8796.000Cavia_porcellus
ENSCSEG00000004748snrpf10095.349ENSCCAG00000017356-8796.000Cebus_capucinus
ENSCSEG00000004748snrpf10086.047ENSCCAG00000033627-6185.714Cebus_capucinus
ENSCSEG00000004748snrpf8796.000ENSCCAG00000037378-8796.000Cebus_capucinus
ENSCSEG00000004748snrpf8796.000ENSCLAG00000007200SNRPF8796.000Chinchilla_lanigera
ENSCSEG00000004748snrpf8796.000ENSCSAG00000003602-6196.000Chlorocebus_sabaeus
ENSCSEG00000004748snrpf7495.312ENSCHOG00000009392SNRPF10095.312Choloepus_hoffmanni
ENSCSEG00000004748snrpf10084.884ENSCPBG00000001985-8986.667Chrysemys_picta_bellii
ENSCSEG00000004748snrpf8789.333ENSCPBG00000006227-8789.333Chrysemys_picta_bellii
ENSCSEG00000004748snrpf10087.209ENSCPBG00000026463-8788.000Chrysemys_picta_bellii
ENSCSEG00000004748snrpf9990.588ENSCPBG00000024287-6091.892Chrysemys_picta_bellii
ENSCSEG00000004748snrpf9985.882ENSCSAVG00000007498-8487.838Ciona_savignyi
ENSCSEG00000004748snrpf8788.000ENSCGRG00001008965-5789.041Cricetulus_griseus_chok1gshd
ENSCSEG00000004748snrpf8796.000ENSCGRG00001017100-8796.000Cricetulus_griseus_chok1gshd
ENSCSEG00000004748snrpf8796.000ENSCGRG00000000336-8796.000Cricetulus_griseus_crigri
ENSCSEG00000004748snrpf9388.750ENSCGRG00000018878-9488.000Cricetulus_griseus_crigri
ENSCSEG00000004748snrpf9998.824ENSCVAG00000000397snrpf6898.837Cyprinodon_variegatus
ENSCSEG00000004748snrpf10096.591ENSDARG00000105037snrpf10096.591Danio_rerio
ENSCSEG00000004748snrpf8794.667ENSDNOG00000048989-6794.667Dasypus_novemcinctus
ENSCSEG00000004748snrpf8780.000ENSDNOG00000049373-6580.000Dasypus_novemcinctus
ENSCSEG00000004748snrpf8486.111ENSDORG00000025351-10086.111Dipodomys_ordii
ENSCSEG00000004748snrpf6993.220ENSDORG00000029740-7293.220Dipodomys_ordii
ENSCSEG00000004748snrpf9878.571FBgn0000426SmF8382.192Drosophila_melanogaster
ENSCSEG00000004748snrpf8796.000ENSETEG00000001558-8796.000Echinops_telfairi
ENSCSEG00000004748snrpf9574.390ENSEBUG00000001793-7285.075Eptatretus_burgeri
ENSCSEG00000004748snrpf8796.000ENSECAG00000019817SNRPF6196.000Equus_caballus
ENSCSEG00000004748snrpf8695.946ENSEEUG00000013509SNRPF8795.946Erinaceus_europaeus
ENSCSEG00000004748snrpf10093.023ENSELUG00000007737RUXF8694.667Esox_lucius
ENSCSEG00000004748snrpf10096.512ENSELUG00000003121RUXF10096.512Esox_lucius
ENSCSEG00000004748snrpf8796.000ENSFCAG00000029966-8796.000Felis_catus
ENSCSEG00000004748snrpf8773.333ENSFCAG00000021942-8773.333Felis_catus
ENSCSEG00000004748snrpf9875.000ENSFCAG00000031148-7273.077Felis_catus
ENSCSEG00000004748snrpf8695.946ENSFALG00000010799SNRPF8796.000Ficedula_albicollis
ENSCSEG00000004748snrpf8796.000ENSFDAG00000002831-8796.000Fukomys_damarensis
ENSCSEG00000004748snrpf9998.824ENSFHEG00000003240snrpf7598.837Fundulus_heteroclitus
ENSCSEG00000004748snrpf9998.824ENSGMOG00000007741snrpf10098.824Gadus_morhua
ENSCSEG00000004748snrpf8796.000ENSGALG00000011409SNRPF8796.000Gallus_gallus
ENSCSEG00000004748snrpf9898.810ENSGAFG00000016187snrpf9798.810Gambusia_affinis
ENSCSEG00000004748snrpf9997.647ENSGACG00000020055snrpf10097.647Gasterosteus_aculeatus
ENSCSEG00000004748snrpf8689.189ENSGAGG00000012945-6990.667Gopherus_agassizii
ENSCSEG00000004748snrpf9287.342ENSGAGG00000022991-8089.706Gopherus_agassizii
ENSCSEG00000004748snrpf7086.667ENSGAGG00000011163-8689.796Gopherus_agassizii
ENSCSEG00000004748snrpf7291.935ENSGAGG00000020974-5489.062Gopherus_agassizii
ENSCSEG00000004748snrpf8082.609ENSGAGG00000014132-8382.609Gopherus_agassizii
ENSCSEG00000004748snrpf8796.000ENSGGOG00000001127-8796.000Gorilla_gorilla
ENSCSEG00000004748snrpf9877.381ENSGGOG00000039936-8374.667Gorilla_gorilla
ENSCSEG00000004748snrpf9273.418ENSGGOG00000039564-9072.000Gorilla_gorilla
ENSCSEG00000004748snrpf8794.667ENSHGLG00000021172-8794.667Heterocephalus_glaber_female
ENSCSEG00000004748snrpf8796.000ENSHGLG00000009108SNRPF8796.000Heterocephalus_glaber_female
ENSCSEG00000004748snrpf8695.946ENSHGLG00100008103-8795.946Heterocephalus_glaber_male
ENSCSEG00000004748snrpf8794.667ENSHGLG00100019596-8794.667Heterocephalus_glaber_male
ENSCSEG00000004748snrpf7387.143ENSHCOG00000018663snrpf5587.143Hippocampus_comes
ENSCSEG00000004748snrpf10098.837ENSIPUG00000018994snrpf10098.837Ictalurus_punctatus
ENSCSEG00000004748snrpf8796.000ENSSTOG00000010434-8796.000Ictidomys_tridecemlineatus
ENSCSEG00000004748snrpf7889.552ENSJJAG00000004828-8691.071Jaculus_jaculus
ENSCSEG00000004748snrpf10077.907ENSJJAG00000004558-8978.667Jaculus_jaculus
ENSCSEG00000004748snrpf8796.000ENSJJAG00000011272-8796.000Jaculus_jaculus
ENSCSEG00000004748snrpf10081.395ENSJJAG00000010502-8982.667Jaculus_jaculus
ENSCSEG00000004748snrpf10097.674ENSKMAG00000013566snrpf10097.674Kryptolebias_marmoratus
ENSCSEG00000004748snrpf10097.674ENSLBEG00000008800snrpf10097.674Labrus_bergylta
ENSCSEG00000004748snrpf8794.667ENSLACG00000002456-6395.946Latimeria_chalumnae
ENSCSEG00000004748snrpf10096.512ENSLOCG00000015744snrpf10096.512Lepisosteus_oculatus
ENSCSEG00000004748snrpf8695.946ENSLAFG00000017426SNRPF8796.000Loxodonta_africana
ENSCSEG00000004748snrpf9897.619ENSMAMG00000016593snrpf9997.619Mastacembelus_armatus
ENSCSEG00000004748snrpf9898.810ENSMZEG00005014701snrpf9998.810Maylandia_zebra
ENSCSEG00000004748snrpf8595.890ENSMGAG00000011453-6695.890Meleagris_gallopavo
ENSCSEG00000004748snrpf7395.238ENSMAUG00000016909-8595.238Mesocricetus_auratus
ENSCSEG00000004748snrpf8792.000ENSMAUG00000008799-8792.000Mesocricetus_auratus
ENSCSEG00000004748snrpf7395.238ENSMAUG00000019737-8595.238Mesocricetus_auratus
ENSCSEG00000004748snrpf9771.084ENSMAUG00000010289-8670.833Mesocricetus_auratus
ENSCSEG00000004748snrpf8796.000ENSMICG00000012153-8796.000Microcebus_murinus
ENSCSEG00000004748snrpf8789.333ENSMICG00000030494-6089.333Microcebus_murinus
ENSCSEG00000004748snrpf8782.667ENSMOCG00000022166-8282.667Microtus_ochrogaster
ENSCSEG00000004748snrpf7979.412ENSMOCG00000020220-8779.412Microtus_ochrogaster
ENSCSEG00000004748snrpf8796.000ENSMOCG00000020437Snrpf8796.000Microtus_ochrogaster
ENSCSEG00000004748snrpf9997.647ENSMMOG00000007127snrpf10097.647Mola_mola
ENSCSEG00000004748snrpf8796.000ENSMODG00000008091SNRPF6696.000Monodelphis_domestica
ENSCSEG00000004748snrpf9898.810ENSMALG00000012328snrpf9998.810Monopterus_albus
ENSCSEG00000004748snrpf8796.000MGP_CAROLIEiJ_G0015735-8796.000Mus_caroli
ENSCSEG00000004748snrpf8796.000ENSMUSG00000020018Snrpf8796.000Mus_musculus
ENSCSEG00000004748snrpf8796.000MGP_PahariEiJ_G0031350Snrpf8796.000Mus_pahari
ENSCSEG00000004748snrpf8796.000MGP_SPRETEiJ_G0016553Snrpf8796.000Mus_spretus
ENSCSEG00000004748snrpf8796.000ENSMPUG00000007176-6796.000Mustela_putorius_furo
ENSCSEG00000004748snrpf10076.744ENSMLUG00000026269-7075.676Myotis_lucifugus
ENSCSEG00000004748snrpf8796.000ENSMLUG00000026149-7196.000Myotis_lucifugus
ENSCSEG00000004748snrpf8796.000ENSMLUG00000027932-7196.000Myotis_lucifugus
ENSCSEG00000004748snrpf8796.000ENSMLUG00000029201-7196.000Myotis_lucifugus
ENSCSEG00000004748snrpf8695.946ENSMLUG00000013577-8795.946Myotis_lucifugus
ENSCSEG00000004748snrpf8796.000ENSNGAG00000024292-8796.000Nannospalax_galili
ENSCSEG00000004748snrpf7388.889ENSNGAG00000005851-7188.333Nannospalax_galili
ENSCSEG00000004748snrpf9998.824ENSNBRG00000011682snrpf8898.837Neolamprologus_brichardi
ENSCSEG00000004748snrpf8670.270ENSMEUG00000000671SNRPF8770.270Notamacropus_eugenii
ENSCSEG00000004748snrpf8796.000ENSODEG00000010328-8796.000Octodon_degus
ENSCSEG00000004748snrpf8794.667ENSOCUG00000010925SNRPF7192.500Oryctolagus_cuniculus
ENSCSEG00000004748snrpf8695.946ENSORLG00020008216snrpf8795.946Oryzias_latipes_hni
ENSCSEG00000004748snrpf8695.946ENSORLG00015007418snrpf8795.946Oryzias_latipes_hsok
ENSCSEG00000004748snrpf9897.619ENSOMEG00000003018snrpf9997.619Oryzias_melastigma
ENSCSEG00000004748snrpf8794.667ENSOGAG00000030323-8794.667Otolemur_garnettii
ENSCSEG00000004748snrpf8796.000ENSOARG00000011853-6596.000Ovis_aries
ENSCSEG00000004748snrpf9877.381ENSPPAG00000037544-8374.667Pan_paniscus
ENSCSEG00000004748snrpf9273.418ENSPPAG00000037479-9172.000Pan_paniscus
ENSCSEG00000004748snrpf9873.810ENSPPRG00000007449-7773.333Panthera_pardus
ENSCSEG00000004748snrpf8796.000ENSPPRG00000005875-8796.000Panthera_pardus
ENSCSEG00000004748snrpf8796.000ENSPTIG00000007520SNRPF8796.000Panthera_tigris_altaica
ENSCSEG00000004748snrpf9876.190ENSPTIG00000005117-8973.333Panthera_tigris_altaica
ENSCSEG00000004748snrpf9877.381ENSPTRG00000043814-8374.667Pan_troglodytes
ENSCSEG00000004748snrpf9273.418ENSPTRG00000047717-9172.000Pan_troglodytes
ENSCSEG00000004748snrpf9998.824ENSPKIG00000014784snrpf9597.674Paramormyrops_kingsleyae
ENSCSEG00000004748snrpf8695.946ENSPSIG00000016462SNRPF8796.000Pelodiscus_sinensis
ENSCSEG00000004748snrpf9997.647ENSPMGG00000023548snrpf10097.647Periophthalmus_magnuspinnatus
ENSCSEG00000004748snrpf8796.000ENSPEMG00000023326Snrpf8796.000Peromyscus_maniculatus_bairdii
ENSCSEG00000004748snrpf9898.810ENSPLAG00000023932snrpf9998.810Poecilia_latipinna
ENSCSEG00000004748snrpf9898.810ENSPMEG00000003377snrpf9998.810Poecilia_mexicana
ENSCSEG00000004748snrpf9898.810ENSPREG00000022635snrpf9798.810Poecilia_reticulata
ENSCSEG00000004748snrpf8796.000ENSPPYG00000004847-8796.000Pongo_abelii
ENSCSEG00000004748snrpf8796.000ENSPCOG00000023833-8796.000Propithecus_coquereli
ENSCSEG00000004748snrpf8796.000ENSPVAG00000009036SNRPF8796.000Pteropus_vampyrus
ENSCSEG00000004748snrpf9898.810ENSPNYG00000021712snrpf9998.810Pundamilia_nyererei
ENSCSEG00000004748snrpf9897.619ENSPNAG00000019117snrpf9997.619Pygocentrus_nattereri
ENSCSEG00000004748snrpf8796.000ENSRNOG00000005556Snrpf8796.000Rattus_norvegicus
ENSCSEG00000004748snrpf8793.333ENSRBIG00000030414-8793.333Rhinopithecus_bieti
ENSCSEG00000004748snrpf8793.333ENSRROG00000021975-8793.333Rhinopithecus_roxellana
ENSCSEG00000004748snrpf8160.563YPR182WSMX38360.563Saccharomyces_cerevisiae
ENSCSEG00000004748snrpf8781.333ENSSBOG00000032297-8681.333Saimiri_boliviensis_boliviensis
ENSCSEG00000004748snrpf8796.000ENSSBOG00000012868-8796.000Saimiri_boliviensis_boliviensis
ENSCSEG00000004748snrpf8796.000ENSSBOG00000036179-8796.000Saimiri_boliviensis_boliviensis
ENSCSEG00000004748snrpf9176.543ENSSBOG00000027638-9176.543Saimiri_boliviensis_boliviensis
ENSCSEG00000004748snrpf8695.946ENSSHAG00000012294SNRPF6795.946Sarcophilus_harrisii
ENSCSEG00000004748snrpf7498.438ENSSFOG00015021523snrpf9698.438Scleropages_formosus
ENSCSEG00000004748snrpf10096.512ENSSMAG00000005533snrpf9897.647Scophthalmus_maximus
ENSCSEG00000004748snrpf7698.462ENSSDUG00000016283snrpf7798.462Seriola_dumerili
ENSCSEG00000004748snrpf9371.250ENSSLDG00000003885-9173.333Seriola_lalandi_dorsalis
ENSCSEG00000004748snrpf10097.674ENSSLDG00000005119snrpf10097.674Seriola_lalandi_dorsalis
ENSCSEG00000004748snrpf8595.890ENSSPUG00000014590-8695.890Sphenodon_punctatus
ENSCSEG00000004748snrpf9998.824ENSSPAG00000003283snrpf9798.824Stegastes_partitus
ENSCSEG00000004748snrpf8796.000ENSSSCG00000000895SNRPF8796.000Sus_scrofa
ENSCSEG00000004748snrpf8097.101ENSTRUG00000014956snrpf10097.101Takifugu_rubripes
ENSCSEG00000004748snrpf10097.674ENSTNIG00000012672snrpf10097.674Tetraodon_nigroviridis
ENSCSEG00000004748snrpf8770.667ENSTTRG00000006070SNRPF8770.667Tursiops_truncatus
ENSCSEG00000004748snrpf8796.000ENSUAMG00000008176-8796.000Ursus_americanus
ENSCSEG00000004748snrpf10083.721ENSUAMG00000001101-8885.333Ursus_americanus
ENSCSEG00000004748snrpf8785.333ENSUMAG00000006177-8885.333Ursus_maritimus
ENSCSEG00000004748snrpf8796.000ENSUMAG00000003528-8796.000Ursus_maritimus
ENSCSEG00000004748snrpf8796.000ENSVPAG00000008712-8796.000Vicugna_pacos
ENSCSEG00000004748snrpf9189.744ENSVVUG00000023821-9689.333Vulpes_vulpes
ENSCSEG00000004748snrpf8672.368ENSXETG00000021630snrpf8772.368Xenopus_tropicalis
ENSCSEG00000004748snrpf9898.810ENSXCOG00000013860snrpf9798.810Xiphophorus_couchianus
ENSCSEG00000004748snrpf9898.810ENSXMAG00000015448snrpf9998.810Xiphophorus_maculatus

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