EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000005106 (Gene tree)
Gene ID: 103391816
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 4121 bases
Position: chr16:5371608-5375728
Accession: 103391816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000007936	Smg4_UPF3	PF03467.15	4.6e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000008022	-	1917	XM_008328230	ENSCSEP00000007936	459 (aa)	XP_008326452	UPI000497C429

Gene Model

Click here to download ENSCSEG00000005106's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000005106's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000005106	upf3a	88	57.208	ENSG00000169062	UPF3A	89	57.604	Homo_sapiens
ENSCSEG00000005106	upf3a	99	91.126	ENSAPOG00000013484	upf3a	99	91.126	Acanthochromis_polyacanthus
ENSCSEG00000005106	upf3a	89	57.931	ENSAMEG00000004259	UPF3A	95	57.931	Ailuropoda_melanoleuca
ENSCSEG00000005106	upf3a	98	87.395	ENSACIG00000020468	upf3a	99	87.395	Amphilophus_citrinellus
ENSCSEG00000005106	upf3a	51	62.069	ENSACIG00000013582	upf3b	98	47.629	Amphilophus_citrinellus
ENSCSEG00000005106	upf3a	84	53.125	ENSAOCG00000000706	upf3b	93	50.575	Amphiprion_ocellaris
ENSCSEG00000005106	upf3a	99	91.558	ENSAOCG00000020784	upf3a	99	91.558	Amphiprion_ocellaris
ENSCSEG00000005106	upf3a	99	91.558	ENSAPEG00000003519	upf3a	99	91.558	Amphiprion_percula
ENSCSEG00000005106	upf3a	99	89.827	ENSATEG00000005843	upf3a	99	89.827	Anabas_testudineus
ENSCSEG00000005106	upf3a	91	52.784	ENSATEG00000018742	upf3b	93	50.673	Anabas_testudineus
ENSCSEG00000005106	upf3a	83	66.919	ENSACAG00000001540	UPF3A	94	66.919	Anolis_carolinensis
ENSCSEG00000005106	upf3a	93	51.992	ENSANAG00000021713	UPF3A	97	52.411	Aotus_nancymaae
ENSCSEG00000005106	upf3a	88	50.000	ENSANAG00000021894	-	77	70.909	Aotus_nancymaae
ENSCSEG00000005106	upf3a	88	45.154	ENSANAG00000025598	-	62	66.667	Aotus_nancymaae
ENSCSEG00000005106	upf3a	99	87.292	ENSACLG00000026274	upf3a	99	87.292	Astatotilapia_calliptera
ENSCSEG00000005106	upf3a	99	79.956	ENSAMXG00000002608	upf3a	100	79.956	Astyanax_mexicanus
ENSCSEG00000005106	upf3a	91	54.607	ENSCJAG00000019102	UPF3A	94	54.967	Callithrix_jacchus
ENSCSEG00000005106	upf3a	88	50.000	ENSCJAG00000004975	UPF3B	77	70.303	Callithrix_jacchus
ENSCSEG00000005106	upf3a	90	57.143	ENSCAFG00000006504	UPF3A	93	57.143	Canis_familiaris
ENSCSEG00000005106	upf3a	88	45.176	ENSCAFG00020004074	UPF3B	64	72.603	Canis_lupus_dingo
ENSCSEG00000005106	upf3a	90	57.143	ENSCAFG00020014268	UPF3A	91	57.143	Canis_lupus_dingo
ENSCSEG00000005106	upf3a	91	53.741	ENSCHIG00000008682	UPF3A	87	53.741	Capra_hircus
ENSCSEG00000005106	upf3a	88	49.773	ENSTSYG00000014690	UPF3B	76	65.882	Carlito_syrichta
ENSCSEG00000005106	upf3a	76	53.619	ENSTSYG00000001918	UPF3A	99	53.867	Carlito_syrichta
ENSCSEG00000005106	upf3a	75	58.904	ENSCPOG00000006824	UPF3A	78	61.493	Cavia_porcellus
ENSCSEG00000005106	upf3a	81	40.155	ENSCCAG00000029813	-	52	60.127	Cebus_capucinus
ENSCSEG00000005106	upf3a	91	55.605	ENSCCAG00000018406	UPF3A	93	56.347	Cebus_capucinus
ENSCSEG00000005106	upf3a	92	58.222	ENSCATG00000029733	UPF3A	93	58.613	Cercocebus_atys
ENSCSEG00000005106	upf3a	91	58.014	ENSCSAG00000017388	UPF3A	93	57.778	Chlorocebus_sabaeus
ENSCSEG00000005106	upf3a	80	59.677	ENSCGRG00001017387	Upf3a	87	58.177	Cricetulus_griseus_chok1gshd
ENSCSEG00000005106	upf3a	80	59.677	ENSCGRG00000001468	Upf3a	87	58.177	Cricetulus_griseus_crigri
ENSCSEG00000005106	upf3a	99	84.449	ENSCVAG00000022333	upf3a	99	84.449	Cyprinodon_variegatus
ENSCSEG00000005106	upf3a	99	80.000	ENSDARG00000069297	upf3a	100	80.000	Danio_rerio
ENSCSEG00000005106	upf3a	81	61.713	ENSDNOG00000034391	UPF3A	89	62.217	Dasypus_novemcinctus
ENSCSEG00000005106	upf3a	85	55.446	ENSETEG00000010110	UPF3A	89	53.613	Echinops_telfairi
ENSCSEG00000005106	upf3a	88	57.882	ENSEASG00005021884	UPF3A	88	57.882	Equus_asinus_asinus
ENSCSEG00000005106	upf3a	88	46.528	ENSEASG00005012919	UPF3B	62	69.565	Equus_asinus_asinus
ENSCSEG00000005106	upf3a	88	58.726	ENSECAG00000017141	UPF3A	88	57.968	Equus_caballus
ENSCSEG00000005106	upf3a	88	46.528	ENSECAG00000016947	UPF3B	62	62.857	Equus_caballus
ENSCSEG00000005106	upf3a	97	83.040	ENSELUG00000011050	upf3a	99	82.112	Esox_lucius
ENSCSEG00000005106	upf3a	90	58.182	ENSFCAG00000014602	UPF3A	91	58.182	Felis_catus
ENSCSEG00000005106	upf3a	83	52.184	ENSFHEG00000017895	upf3b	89	52.163	Fundulus_heteroclitus
ENSCSEG00000005106	upf3a	70	80.061	ENSGMOG00000019615	upf3a	100	80.061	Gadus_morhua
ENSCSEG00000005106	upf3a	99	85.097	ENSGAFG00000021170	upf3a	99	85.097	Gambusia_affinis
ENSCSEG00000005106	upf3a	83	46.305	ENSGAFG00000000829	upf3b	89	51.951	Gambusia_affinis
ENSCSEG00000005106	upf3a	70	81.875	ENSGACG00000001972	upf3a	100	81.875	Gasterosteus_aculeatus
ENSCSEG00000005106	upf3a	54	62.637	ENSGACG00000017435	upf3b	60	70.732	Gasterosteus_aculeatus
ENSCSEG00000005106	upf3a	83	45.894	ENSGAGG00000001219	UPF3B	88	50.594	Gopherus_agassizii
ENSCSEG00000005106	upf3a	83	61.013	ENSGGOG00000015428	UPF3A	89	58.118	Gorilla_gorilla
ENSCSEG00000005106	upf3a	88	45.985	ENSGGOG00000043074	-	88	47.202	Gorilla_gorilla
ENSCSEG00000005106	upf3a	81	48.541	ENSGGOG00000041219	-	85	50.000	Gorilla_gorilla
ENSCSEG00000005106	upf3a	99	90.693	ENSHBUG00000011325	upf3a	99	90.693	Haplochromis_burtoni
ENSCSEG00000005106	upf3a	75	57.263	ENSHGLG00000001544	UPF3A	84	57.465	Heterocephalus_glaber_female
ENSCSEG00000005106	upf3a	75	57.263	ENSHGLG00100013244	UPF3A	84	57.465	Heterocephalus_glaber_male
ENSCSEG00000005106	upf3a	95	80.682	ENSHCOG00000013985	upf3a	94	80.682	Hippocampus_comes
ENSCSEG00000005106	upf3a	99	78.261	ENSIPUG00000023450	upf3a	100	78.261	Ictalurus_punctatus
ENSCSEG00000005106	upf3a	99	89.417	ENSKMAG00000004381	upf3a	99	89.417	Kryptolebias_marmoratus
ENSCSEG00000005106	upf3a	98	86.154	ENSLBEG00000021570	upf3a	99	85.495	Labrus_bergylta
ENSCSEG00000005106	upf3a	61	43.149	ENSLACG00000006645	UPF3A	66	87.500	Latimeria_chalumnae
ENSCSEG00000005106	upf3a	97	74.891	ENSLOCG00000002665	upf3a	98	74.891	Lepisosteus_oculatus
ENSCSEG00000005106	upf3a	91	57.541	ENSMFAG00000045016	UPF3A	93	56.849	Macaca_fascicularis
ENSCSEG00000005106	upf3a	87	58.894	ENSMMUG00000007449	UPF3A	93	57.534	Macaca_mulatta
ENSCSEG00000005106	upf3a	83	61.364	ENSMNEG00000036402	UPF3A	82	60.591	Macaca_nemestrina
ENSCSEG00000005106	upf3a	83	60.859	ENSMLEG00000014726	UPF3A	93	60.099	Mandrillus_leucophaeus
ENSCSEG00000005106	upf3a	99	87.238	ENSMAMG00000018364	upf3a	99	87.238	Mastacembelus_armatus
ENSCSEG00000005106	upf3a	99	87.292	ENSMZEG00005021571	upf3a	99	87.292	Maylandia_zebra
ENSCSEG00000005106	upf3a	86	62.990	ENSMGAG00000014837	UPF3A	99	63.235	Meleagris_gallopavo
ENSCSEG00000005106	upf3a	54	73.200	ENSMOCG00000000550	Upf3a	56	70.352	Microtus_ochrogaster
ENSCSEG00000005106	upf3a	99	85.325	ENSMMOG00000019751	upf3a	99	85.325	Mola_mola
ENSCSEG00000005106	upf3a	84	66.750	ENSMODG00000003159	UPF3A	93	67.750	Monodelphis_domestica
ENSCSEG00000005106	upf3a	82	60.526	MGP_CAROLIEiJ_G0030848	Upf3a	88	57.215	Mus_caroli
ENSCSEG00000005106	upf3a	83	59.000	ENSMUSG00000038398	Upf3a	92	54.300	Mus_musculus
ENSCSEG00000005106	upf3a	80	62.042	MGP_PahariEiJ_G0021311	Upf3a	87	59.640	Mus_pahari
ENSCSEG00000005106	upf3a	83	58.750	MGP_SPRETEiJ_G0031958	Upf3a	92	54.054	Mus_spretus
ENSCSEG00000005106	upf3a	91	57.303	ENSMPUG00000009139	UPF3A	91	57.303	Mustela_putorius_furo
ENSCSEG00000005106	upf3a	81	61.637	ENSMLUG00000015905	UPF3A	92	61.637	Myotis_lucifugus
ENSCSEG00000005106	upf3a	84	56.750	ENSNGAG00000019314	Upf3a	94	56.750	Nannospalax_galili
ENSCSEG00000005106	upf3a	99	90.260	ENSNBRG00000000828	upf3a	99	90.260	Neolamprologus_brichardi
ENSCSEG00000005106	upf3a	83	61.013	ENSNLEG00000007563	UPF3A	89	58.451	Nomascus_leucogenys
ENSCSEG00000005106	upf3a	99	89.462	ENSONIG00000006817	upf3a	99	89.462	Oreochromis_niloticus
ENSCSEG00000005106	upf3a	77	55.707	ENSOANG00000006985	-	95	55.586	Ornithorhynchus_anatinus
ENSCSEG00000005106	upf3a	99	83.441	ENSORLG00000010911	upf3a	99	83.441	Oryzias_latipes
ENSCSEG00000005106	upf3a	99	82.646	ENSORLG00020014317	upf3a	99	82.646	Oryzias_latipes_hni
ENSCSEG00000005106	upf3a	84	41.784	ENSORLG00020003758	upf3b	57	61.714	Oryzias_latipes_hni
ENSCSEG00000005106	upf3a	99	83.948	ENSORLG00015017339	upf3a	58	83.948	Oryzias_latipes_hsok
ENSCSEG00000005106	upf3a	99	85.900	ENSOMEG00000014425	upf3a	99	85.900	Oryzias_melastigma
ENSCSEG00000005106	upf3a	73	62.178	ENSOGAG00000004788	UPF3A	84	62.178	Otolemur_garnettii
ENSCSEG00000005106	upf3a	84	58.105	ENSOARG00000009004	UPF3A	87	56.501	Ovis_aries
ENSCSEG00000005106	upf3a	83	59.653	ENSPPAG00000042267	UPF3A	89	57.143	Pan_paniscus
ENSCSEG00000005106	upf3a	90	57.955	ENSPPRG00000025062	UPF3A	91	57.955	Panthera_pardus
ENSCSEG00000005106	upf3a	81	48.958	ENSPTRG00000041187	-	86	48.698	Pan_troglodytes
ENSCSEG00000005106	upf3a	81	45.547	ENSPTRG00000051640	-	85	47.583	Pan_troglodytes
ENSCSEG00000005106	upf3a	83	59.653	ENSPTRG00000006073	UPF3A	89	57.143	Pan_troglodytes
ENSCSEG00000005106	upf3a	88	60.000	ENSPANG00000004346	UPF3A	93	58.520	Papio_anubis
ENSCSEG00000005106	upf3a	99	70.122	ENSPKIG00000004422	upf3a	100	70.122	Paramormyrops_kingsleyae
ENSCSEG00000005106	upf3a	86	51.501	ENSPKIG00000019226	upf3b	75	76.068	Paramormyrops_kingsleyae
ENSCSEG00000005106	upf3a	84	66.584	ENSPSIG00000007468	UPF3A	98	66.584	Pelodiscus_sinensis
ENSCSEG00000005106	upf3a	99	82.365	ENSPMGG00000012696	upf3a	99	82.365	Periophthalmus_magnuspinnatus
ENSCSEG00000005106	upf3a	80	60.377	ENSPEMG00000019968	-	87	60.377	Peromyscus_maniculatus_bairdii
ENSCSEG00000005106	upf3a	74	69.912	ENSPCIG00000019590	-	90	67.476	Phascolarctos_cinereus
ENSCSEG00000005106	upf3a	99	85.931	ENSPFOG00000013222	upf3a	99	85.931	Poecilia_formosa
ENSCSEG00000005106	upf3a	98	85.120	ENSPLAG00000011960	upf3a	100	85.120	Poecilia_latipinna
ENSCSEG00000005106	upf3a	85	44.470	ENSPLAG00000005105	upf3b	93	50.340	Poecilia_latipinna
ENSCSEG00000005106	upf3a	85	44.470	ENSPLAG00000019922	upf3b	93	50.340	Poecilia_latipinna
ENSCSEG00000005106	upf3a	99	81.950	ENSPMEG00000000836	upf3a	99	81.950	Poecilia_mexicana
ENSCSEG00000005106	upf3a	85	44.470	ENSPMEG00000023532	upf3b	93	50.340	Poecilia_mexicana
ENSCSEG00000005106	upf3a	88	57.208	ENSPPYG00000005536	UPF3A	89	57.604	Pongo_abelii
ENSCSEG00000005106	upf3a	56	62.257	ENSPCAG00000013124	UPF3A	54	61.923	Procavia_capensis
ENSCSEG00000005106	upf3a	87	55.478	ENSPVAG00000005656	UPF3A	88	55.478	Pteropus_vampyrus
ENSCSEG00000005106	upf3a	99	87.292	ENSPNYG00000011289	upf3a	99	87.292	Pundamilia_nyererei
ENSCSEG00000005106	upf3a	97	81.250	ENSPNAG00000019532	upf3a	98	81.250	Pygocentrus_nattereri
ENSCSEG00000005106	upf3a	91	48.571	ENSPNAG00000021528	upf3b	62	65.464	Pygocentrus_nattereri
ENSCSEG00000005106	upf3a	72	63.142	ENSRNOG00000017397	Upf3a	81	60.231	Rattus_norvegicus
ENSCSEG00000005106	upf3a	85	59.506	ENSRBIG00000034007	UPF3A	92	58.571	Rhinopithecus_bieti
ENSCSEG00000005106	upf3a	85	60.298	ENSRROG00000012212	UPF3A	83	60.705	Rhinopithecus_roxellana
ENSCSEG00000005106	upf3a	75	55.435	ENSSBOG00000029989	UPF3A	83	55.820	Saimiri_boliviensis_boliviensis
ENSCSEG00000005106	upf3a	88	50.455	ENSSBOG00000019740	UPF3B	78	71.779	Saimiri_boliviensis_boliviensis
ENSCSEG00000005106	upf3a	86	65.848	ENSSHAG00000009895	UPF3A	95	67.750	Sarcophilus_harrisii
ENSCSEG00000005106	upf3a	99	69.130	ENSSFOG00015021851	upf3a	100	68.696	Scleropages_formosus
ENSCSEG00000005106	upf3a	99	82.245	ENSSMAG00000003858	upf3a	99	83.469	Scophthalmus_maximus
ENSCSEG00000005106	upf3a	82	51.325	ENSSMAG00000012913	upf3b	61	64.948	Scophthalmus_maximus
ENSCSEG00000005106	upf3a	99	88.703	ENSSDUG00000009680	upf3a	99	88.703	Seriola_dumerili
ENSCSEG00000005106	upf3a	99	91.775	ENSSLDG00000009700	upf3a	99	91.775	Seriola_lalandi_dorsalis
ENSCSEG00000005106	upf3a	80	49.081	ENSSARG00000007262	UPF3A	92	48.556	Sorex_araneus
ENSCSEG00000005106	upf3a	99	89.610	ENSSPAG00000007938	upf3a	99	87.500	Stegastes_partitus
ENSCSEG00000005106	upf3a	82	57.761	ENSSSCG00000024679	UPF3A	78	57.761	Sus_scrofa
ENSCSEG00000005106	upf3a	83	68.101	ENSTGUG00000009493	UPF3A	99	68.101	Taeniopygia_guttata
ENSCSEG00000005106	upf3a	99	84.061	ENSTRUG00000012730	upf3a	99	84.061	Takifugu_rubripes
ENSCSEG00000005106	upf3a	84	76.904	ENSTNIG00000014973	upf3a	100	76.396	Tetraodon_nigroviridis
ENSCSEG00000005106	upf3a	62	52.980	ENSTBEG00000017186	-	93	50.498	Tupaia_belangeri
ENSCSEG00000005106	upf3a	73	55.874	ENSTTRG00000015414	UPF3A	83	50.500	Tursiops_truncatus
ENSCSEG00000005106	upf3a	83	44.802	ENSUAMG00000024565	UPF3B	62	68.116	Ursus_americanus
ENSCSEG00000005106	upf3a	81	58.854	ENSVPAG00000003525	UPF3A	100	56.585	Vicugna_pacos
ENSCSEG00000005106	upf3a	83	46.482	ENSVVUG00000011594	UPF3B	77	70.909	Vulpes_vulpes
ENSCSEG00000005106	upf3a	85	58.105	ENSVVUG00000013538	UPF3A	81	58.105	Vulpes_vulpes
ENSCSEG00000005106	upf3a	83	45.792	ENSXETG00000007440	upf3b	71	71.341	Xenopus_tropicalis
ENSCSEG00000005106	upf3a	88	57.213	ENSXETG00000002572	upf3a	93	58.734	Xenopus_tropicalis
ENSCSEG00000005106	upf3a	99	85.745	ENSXMAG00000013452	upf3a	99	85.745	Xiphophorus_maculatus
ENSCSEG00000005106	upf3a	84	44.819	ENSXMAG00000013680	upf3b	90	51.442	Xiphophorus_maculatus