EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000005255 (Gene tree)
Gene ID: 103387272
Gene Symbol: si:dkey-85a20.4
Alias: -
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 12066 bases
Position: chr12:7553202-7565267
Accession: 103387272
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000008246	SpoU_methylase	PF00588.19	1.7e-29	1	1
ENSCSEP00000008228	SpoU_methylase	PF00588.19	1.8e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000008314	-	4515	XM_008321828	ENSCSEP00000008228	1504 (aa)	-	-
ENSCSET00000008332	-	4143	-	ENSCSEP00000008246	1380 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000005255's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000005255's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000005255	si:dkey-85a20.4	99	39.464	ENSG00000059588	TARBP1	99	39.903	Homo_sapiens
ENSCSEG00000005255	si:dkey-85a20.4	99	70.747	ENSAPOG00000016419	si:dkey-85a20.4	95	70.624	Acanthochromis_polyacanthus
ENSCSEG00000005255	si:dkey-85a20.4	85	44.681	ENSAMEG00000003359	TARBP1	99	41.588	Ailuropoda_melanoleuca
ENSCSEG00000005255	si:dkey-85a20.4	99	70.343	ENSATEG00000020266	si:dkey-85a20.4	99	66.339	Anabas_testudineus
ENSCSEG00000005255	si:dkey-85a20.4	83	46.715	ENSAPLG00000007666	TARBP1	99	42.564	Anas_platyrhynchos
ENSCSEG00000005255	si:dkey-85a20.4	84	42.494	ENSACAG00000001142	TARBP1	86	39.754	Anolis_carolinensis
ENSCSEG00000005255	si:dkey-85a20.4	87	46.272	ENSANAG00000022031	TARBP1	88	42.011	Aotus_nancymaae
ENSCSEG00000005255	si:dkey-85a20.4	85	54.449	ENSBTAG00000004517	TARBP1	99	49.902	Bos_taurus
ENSCSEG00000005255	si:dkey-85a20.4	93	48.594	ENSCJAG00000018155	TARBP1	99	40.182	Callithrix_jacchus
ENSCSEG00000005255	si:dkey-85a20.4	86	45.390	ENSCAFG00000011533	TARBP1	98	42.143	Canis_familiaris
ENSCSEG00000005255	si:dkey-85a20.4	86	45.433	ENSCAFG00020027141	TARBP1	99	39.149	Canis_lupus_dingo
ENSCSEG00000005255	si:dkey-85a20.4	79	48.103	ENSCHIG00000011437	TARBP1	99	38.940	Capra_hircus
ENSCSEG00000005255	si:dkey-85a20.4	80	44.905	ENSTSYG00000010382	TARBP1	96	42.357	Carlito_syrichta
ENSCSEG00000005255	si:dkey-85a20.4	76	47.027	ENSCAPG00000010831	TARBP1	99	40.687	Cavia_aperea
ENSCSEG00000005255	si:dkey-85a20.4	86	49.531	ENSCPOG00000013995	TARBP1	99	39.606	Cavia_porcellus
ENSCSEG00000005255	si:dkey-85a20.4	83	49.004	ENSCCAG00000037278	TARBP1	99	39.733	Cebus_capucinus
ENSCSEG00000005255	si:dkey-85a20.4	88	45.597	ENSCATG00000011754	TARBP1	99	39.672	Cercocebus_atys
ENSCSEG00000005255	si:dkey-85a20.4	78	48.868	ENSCLAG00000003655	TARBP1	96	41.591	Chinchilla_lanigera
ENSCSEG00000005255	si:dkey-85a20.4	78	45.411	ENSCSAG00000010100	TARBP1	99	43.111	Chlorocebus_sabaeus
ENSCSEG00000005255	si:dkey-85a20.4	78	43.356	ENSCPBG00000005587	TARBP1	93	42.494	Chrysemys_picta_bellii
ENSCSEG00000005255	si:dkey-85a20.4	84	45.444	ENSCANG00000034343	TARBP1	99	43.035	Colobus_angolensis_palliatus
ENSCSEG00000005255	si:dkey-85a20.4	99	39.321	ENSCGRG00001016690	Tarbp1	99	39.396	Cricetulus_griseus_chok1gshd
ENSCSEG00000005255	si:dkey-85a20.4	86	45.949	ENSCGRG00000016893	Tarbp1	94	42.117	Cricetulus_griseus_crigri
ENSCSEG00000005255	si:dkey-85a20.4	98	58.416	ENSDARG00000079055	si:dkey-85a20.4	99	65.180	Danio_rerio
ENSCSEG00000005255	si:dkey-85a20.4	93	45.634	ENSDNOG00000008637	TARBP1	99	39.378	Dasypus_novemcinctus
ENSCSEG00000005255	si:dkey-85a20.4	73	49.865	ENSDORG00000007984	Tarbp1	100	42.912	Dipodomys_ordii
ENSCSEG00000005255	si:dkey-85a20.4	99	39.522	ENSEASG00005000252	TARBP1	99	39.853	Equus_asinus_asinus
ENSCSEG00000005255	si:dkey-85a20.4	99	40.087	ENSECAG00000023673	TARBP1	97	44.260	Equus_caballus
ENSCSEG00000005255	si:dkey-85a20.4	99	58.014	ENSELUG00000012193	si:dkey-85a20.4	99	55.953	Esox_lucius
ENSCSEG00000005255	si:dkey-85a20.4	86	43.514	ENSFCAG00000014183	TARBP1	99	38.373	Felis_catus
ENSCSEG00000005255	si:dkey-85a20.4	80	46.902	ENSFALG00000013565	TARBP1	99	42.555	Ficedula_albicollis
ENSCSEG00000005255	si:dkey-85a20.4	74	47.082	ENSFDAG00000001308	TARBP1	99	41.501	Fukomys_damarensis
ENSCSEG00000005255	si:dkey-85a20.4	100	58.137	ENSFHEG00000007565	si:dkey-85a20.4	99	58.264	Fundulus_heteroclitus
ENSCSEG00000005255	si:dkey-85a20.4	87	60.123	ENSGMOG00000004549	si:dkey-85a20.4	99	58.393	Gadus_morhua
ENSCSEG00000005255	si:dkey-85a20.4	84	46.107	ENSGALG00000011000	TARBP1	97	43.158	Gallus_gallus
ENSCSEG00000005255	si:dkey-85a20.4	99	66.015	ENSGAFG00000007387	si:dkey-85a20.4	99	61.870	Gambusia_affinis
ENSCSEG00000005255	si:dkey-85a20.4	86	68.357	ENSGACG00000005865	si:dkey-85a20.4	99	65.502	Gasterosteus_aculeatus
ENSCSEG00000005255	si:dkey-85a20.4	84	47.087	ENSGAGG00000012102	TARBP1	89	42.653	Gopherus_agassizii
ENSCSEG00000005255	si:dkey-85a20.4	85	43.772	ENSGGOG00000022879	TARBP1	99	42.302	Gorilla_gorilla
ENSCSEG00000005255	si:dkey-85a20.4	99	71.078	ENSHBUG00000008877	si:dkey-85a20.4	99	67.449	Haplochromis_burtoni
ENSCSEG00000005255	si:dkey-85a20.4	81	48.991	ENSHGLG00000011592	TARBP1	99	38.920	Heterocephalus_glaber_female
ENSCSEG00000005255	si:dkey-85a20.4	81	48.991	ENSHGLG00100015169	TARBP1	95	41.875	Heterocephalus_glaber_male
ENSCSEG00000005255	si:dkey-85a20.4	99	57.640	ENSIPUG00000005249	si:dkey-85a20.4	98	50.155	Ictalurus_punctatus
ENSCSEG00000005255	si:dkey-85a20.4	82	42.109	ENSSTOG00000032291	TARBP1	96	42.109	Ictidomys_tridecemlineatus
ENSCSEG00000005255	si:dkey-85a20.4	81	47.066	ENSJJAG00000017840	Tarbp1	94	40.738	Jaculus_jaculus
ENSCSEG00000005255	si:dkey-85a20.4	90	67.166	ENSKMAG00000017546	si:dkey-85a20.4	99	56.043	Kryptolebias_marmoratus
ENSCSEG00000005255	si:dkey-85a20.4	84	75.000	ENSLBEG00000012132	si:dkey-85a20.4	95	75.000	Labrus_bergylta
ENSCSEG00000005255	si:dkey-85a20.4	99	47.774	ENSLACG00000004337	TARBP1	93	47.653	Latimeria_chalumnae
ENSCSEG00000005255	si:dkey-85a20.4	99	55.542	ENSLOCG00000016214	si:dkey-85a20.4	100	49.629	Lepisosteus_oculatus
ENSCSEG00000005255	si:dkey-85a20.4	86	45.775	ENSLAFG00000011394	TARBP1	95	40.637	Loxodonta_africana
ENSCSEG00000005255	si:dkey-85a20.4	89	45.292	ENSMFAG00000041068	TARBP1	99	39.852	Macaca_fascicularis
ENSCSEG00000005255	si:dkey-85a20.4	89	45.292	ENSMMUG00000021703	TARBP1	99	39.744	Macaca_mulatta
ENSCSEG00000005255	si:dkey-85a20.4	89	45.292	ENSMNEG00000045002	TARBP1	99	39.733	Macaca_nemestrina
ENSCSEG00000005255	si:dkey-85a20.4	83	45.411	ENSMLEG00000044182	TARBP1	99	42.910	Mandrillus_leucophaeus
ENSCSEG00000005255	si:dkey-85a20.4	100	70.624	ENSMAMG00000021760	si:dkey-85a20.4	99	65.732	Mastacembelus_armatus
ENSCSEG00000005255	si:dkey-85a20.4	99	70.833	ENSMZEG00005005751	si:dkey-85a20.4	99	67.264	Maylandia_zebra
ENSCSEG00000005255	si:dkey-85a20.4	99	46.026	ENSMAUG00000020968	Tarbp1	99	40.136	Mesocricetus_auratus
ENSCSEG00000005255	si:dkey-85a20.4	86	41.577	ENSMICG00000015280	TARBP1	99	36.855	Microcebus_murinus
ENSCSEG00000005255	si:dkey-85a20.4	99	44.915	ENSMOCG00000004128	Tarbp1	99	39.301	Microtus_ochrogaster
ENSCSEG00000005255	si:dkey-85a20.4	99	69.125	ENSMMOG00000007795	si:dkey-85a20.4	99	63.474	Mola_mola
ENSCSEG00000005255	si:dkey-85a20.4	99	39.151	ENSMODG00000008504	TARBP1	99	39.545	Monodelphis_domestica
ENSCSEG00000005255	si:dkey-85a20.4	99	70.603	ENSMALG00000002916	si:dkey-85a20.4	99	66.624	Monopterus_albus
ENSCSEG00000005255	si:dkey-85a20.4	99	46.080	MGP_CAROLIEiJ_G0031729	Tarbp1	99	39.323	Mus_caroli
ENSCSEG00000005255	si:dkey-85a20.4	99	46.347	ENSMUSG00000090290	Tarbp1	99	39.668	Mus_musculus
ENSCSEG00000005255	si:dkey-85a20.4	99	45.894	MGP_PahariEiJ_G0023326	Tarbp1	99	39.792	Mus_pahari
ENSCSEG00000005255	si:dkey-85a20.4	99	46.347	MGP_SPRETEiJ_G0032846	Tarbp1	99	39.914	Mus_spretus
ENSCSEG00000005255	si:dkey-85a20.4	76	45.972	ENSMPUG00000002802	TARBP1	99	42.502	Mustela_putorius_furo
ENSCSEG00000005255	si:dkey-85a20.4	84	44.203	ENSMLUG00000002414	TARBP1	99	41.194	Myotis_lucifugus
ENSCSEG00000005255	si:dkey-85a20.4	83	48.862	ENSNLEG00000002518	TARBP1	99	40.219	Nomascus_leucogenys
ENSCSEG00000005255	si:dkey-85a20.4	66	54.255	ENSMEUG00000011370	-	64	54.255	Notamacropus_eugenii
ENSCSEG00000005255	si:dkey-85a20.4	75	51.414	ENSOPRG00000013822	TARBP1	69	50.500	Ochotona_princeps
ENSCSEG00000005255	si:dkey-85a20.4	93	48.797	ENSODEG00000005238	TARBP1	87	48.663	Octodon_degus
ENSCSEG00000005255	si:dkey-85a20.4	87	71.463	ENSONIG00000009789	si:dkey-85a20.4	99	68.973	Oreochromis_niloticus
ENSCSEG00000005255	si:dkey-85a20.4	84	47.510	ENSOCUG00000017418	TARBP1	99	38.757	Oryctolagus_cuniculus
ENSCSEG00000005255	si:dkey-85a20.4	99	65.031	ENSORLG00000010529	si:dkey-85a20.4	99	59.097	Oryzias_latipes
ENSCSEG00000005255	si:dkey-85a20.4	99	64.908	ENSORLG00020019264	si:dkey-85a20.4	99	59.158	Oryzias_latipes_hni
ENSCSEG00000005255	si:dkey-85a20.4	99	64.785	ENSORLG00015003276	si:dkey-85a20.4	99	58.849	Oryzias_latipes_hsok
ENSCSEG00000005255	si:dkey-85a20.4	89	41.833	ENSOGAG00000002379	TARBP1	99	37.205	Otolemur_garnettii
ENSCSEG00000005255	si:dkey-85a20.4	79	48.243	ENSOARG00000003434	TARBP1	92	41.709	Ovis_aries
ENSCSEG00000005255	si:dkey-85a20.4	84	45.680	ENSPPAG00000028097	TARBP1	99	43.475	Pan_paniscus
ENSCSEG00000005255	si:dkey-85a20.4	85	40.909	ENSPPRG00000013561	TARBP1	86	43.184	Panthera_pardus
ENSCSEG00000005255	si:dkey-85a20.4	82	41.883	ENSPTIG00000009281	TARBP1	99	41.883	Panthera_tigris_altaica
ENSCSEG00000005255	si:dkey-85a20.4	89	45.680	ENSPTRG00000002124	TARBP1	99	40.049	Pan_troglodytes
ENSCSEG00000005255	si:dkey-85a20.4	89	45.292	ENSPANG00000021933	TARBP1	99	39.416	Papio_anubis
ENSCSEG00000005255	si:dkey-85a20.4	99	57.837	ENSPKIG00000016716	si:dkey-85a20.4	99	53.228	Paramormyrops_kingsleyae
ENSCSEG00000005255	si:dkey-85a20.4	78	46.890	ENSPSIG00000010699	TARBP1	99	42.352	Pelodiscus_sinensis
ENSCSEG00000005255	si:dkey-85a20.4	86	45.728	ENSPEMG00000006888	Tarbp1	92	41.441	Peromyscus_maniculatus_bairdii
ENSCSEG00000005255	si:dkey-85a20.4	90	69.036	ENSPCIG00000029710	TARBP1	96	69.036	Phascolarctos_cinereus
ENSCSEG00000005255	si:dkey-85a20.4	87	65.610	ENSPFOG00000013020	si:dkey-85a20.4	99	62.894	Poecilia_formosa
ENSCSEG00000005255	si:dkey-85a20.4	99	66.544	ENSPLAG00000006044	si:dkey-85a20.4	99	61.747	Poecilia_latipinna
ENSCSEG00000005255	si:dkey-85a20.4	99	66.176	ENSPMEG00000017857	si:dkey-85a20.4	99	61.685	Poecilia_mexicana
ENSCSEG00000005255	si:dkey-85a20.4	99	66.749	ENSPREG00000022753	si:dkey-85a20.4	99	61.776	Poecilia_reticulata
ENSCSEG00000005255	si:dkey-85a20.4	82	45.230	ENSPPYG00000000102	TARBP1	99	43.700	Pongo_abelii
ENSCSEG00000005255	si:dkey-85a20.4	80	78.231	ENSPCAG00000004808	TARBP1	79	78.231	Procavia_capensis
ENSCSEG00000005255	si:dkey-85a20.4	86	45.212	ENSPCOG00000005666	TARBP1	99	38.513	Propithecus_coquereli
ENSCSEG00000005255	si:dkey-85a20.4	74	60.702	ENSPVAG00000014798	TARBP1	88	57.929	Pteropus_vampyrus
ENSCSEG00000005255	si:dkey-85a20.4	99	70.147	ENSPNYG00000019135	si:dkey-85a20.4	100	65.831	Pundamilia_nyererei
ENSCSEG00000005255	si:dkey-85a20.4	93	45.430	ENSRNOG00000053574	Tarbp1	99	38.367	Rattus_norvegicus
ENSCSEG00000005255	si:dkey-85a20.4	89	45.444	ENSRBIG00000043362	TARBP1	96	41.491	Rhinopithecus_bieti
ENSCSEG00000005255	si:dkey-85a20.4	88	45.718	ENSRROG00000029527	TARBP1	92	42.018	Rhinopithecus_roxellana
ENSCSEG00000005255	si:dkey-85a20.4	84	45.562	ENSSBOG00000034503	TARBP1	96	43.045	Saimiri_boliviensis_boliviensis
ENSCSEG00000005255	si:dkey-85a20.4	83	46.163	ENSSHAG00000000013	TARBP1	97	45.923	Sarcophilus_harrisii
ENSCSEG00000005255	si:dkey-85a20.4	99	57.927	ENSSFOG00015002660	si:dkey-85a20.4	97	55.277	Scleropages_formosus
ENSCSEG00000005255	si:dkey-85a20.4	100	73.162	ENSSMAG00000007081	si:dkey-85a20.4	95	72.672	Scophthalmus_maximus
ENSCSEG00000005255	si:dkey-85a20.4	100	69.460	ENSSDUG00000023566	si:dkey-85a20.4	99	69.714	Seriola_dumerili
ENSCSEG00000005255	si:dkey-85a20.4	99	70.481	ENSSLDG00000020200	si:dkey-85a20.4	96	74.015	Seriola_lalandi_dorsalis
ENSCSEG00000005255	si:dkey-85a20.4	70	57.044	ENSSARG00000012207	TARBP1	76	52.887	Sorex_araneus
ENSCSEG00000005255	si:dkey-85a20.4	99	38.639	ENSSPUG00000015364	TARBP1	99	38.797	Sphenodon_punctatus
ENSCSEG00000005255	si:dkey-85a20.4	99	70.991	ENSSPAG00000007213	si:dkey-85a20.4	99	66.360	Stegastes_partitus
ENSCSEG00000005255	si:dkey-85a20.4	99	43.182	ENSSSCG00000010160	TARBP1	99	40.729	Sus_scrofa
ENSCSEG00000005255	si:dkey-85a20.4	80	45.752	ENSTGUG00000010214	TARBP1	99	41.484	Taeniopygia_guttata
ENSCSEG00000005255	si:dkey-85a20.4	93	76.190	ENSTNIG00000016586	si:dkey-85a20.4	96	76.190	Tetraodon_nigroviridis
ENSCSEG00000005255	si:dkey-85a20.4	74	42.727	ENSTTRG00000008707	TARBP1	78	41.379	Tursiops_truncatus
ENSCSEG00000005255	si:dkey-85a20.4	82	45.035	ENSUMAG00000006730	TARBP1	99	41.449	Ursus_maritimus
ENSCSEG00000005255	si:dkey-85a20.4	64	77.419	ENSVPAG00000007665	TARBP1	70	77.419	Vicugna_pacos
ENSCSEG00000005255	si:dkey-85a20.4	84	45.283	ENSVVUG00000007460	TARBP1	96	42.628	Vulpes_vulpes
ENSCSEG00000005255	si:dkey-85a20.4	84	41.890	ENSXETG00000016224	tarbp1	99	39.260	Xenopus_tropicalis
ENSCSEG00000005255	si:dkey-85a20.4	89	62.005	ENSXCOG00000011779	si:dkey-85a20.4	99	61.712	Xiphophorus_couchianus
ENSCSEG00000005255	si:dkey-85a20.4	63	64.407	ENSXMAG00000009600	si:dkey-85a20.4	100	60.667	Xiphophorus_maculatus