EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000005258 (Gene tree)
Gene ID: 103389541
Gene Symbol: arl13b
Alias: arl2l1|chunp6872|dkfzp761h079|fc23g07|scorpion|un-named hi459|unm hi459|wu:fc23g07|zgc:123149
Full Name: ADP ribosylation factor like GTPase 13B
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 6092 bases
Position: chr14:9761406-9767497
Accession: 103389541
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000008219	MMR_HSR1	PF01926.23	1.1e-05	1	1
ENSCSEP00000008205	MMR_HSR1	PF01926.23	2e-05	1	1
ENSCSEP00000008209	MMR_HSR1	PF01926.23	2.2e-05	1	1
ENSCSEP00000008211	MMR_HSR1	PF01926.23	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000008290	-	2162	XM_008324984	ENSCSEP00000008205	391 (aa)	XP_008323206	UPI0004955B8D
ENSCSET00000008305	-	1029	-	ENSCSEP00000008219	342 (aa)	-	-
ENSCSET00000008295	-	2207	-	ENSCSEP00000008209	406 (aa)	-	-
ENSCSET00000008297	-	1227	XM_008324983	ENSCSEP00000008211	408 (aa)	XP_008323205	UPI0004968D3D

Gene Model

Click here to download ENSCSEG00000005258's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000005258's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000005258	arl13b	51	32.948	ENSCSEG00000012285	-	92	32.948
ENSCSEG00000005258	arl13b	51	32.386	ENSCSEG00000018550	-	92	32.386
ENSCSEG00000005258	arl13b	52	34.239	ENSCSEG00000012307	-	84	34.239
ENSCSEG00000005258	arl13b	50	34.884	ENSCSEG00000010824	arl3l2	87	34.884
ENSCSEG00000005258	arl13b	51	33.526	ENSCSEG00000013309	arl3	89	33.526
ENSCSEG00000005258	arl13b	51	30.058	ENSCSEG00000006004	arf5	91	30.058
ENSCSEG00000005258	arl13b	51	31.111	ENSCSEG00000005784	ARL6	92	31.111
ENSCSEG00000005258	arl13b	53	32.258	ENSCSEG00000000838	arl4cb	77	32.967
ENSCSEG00000005258	arl13b	50	32.164	ENSCSEG00000007217	-	90	32.164
ENSCSEG00000005258	arl13b	54	30.526	ENSCSEG00000005387	-	92	30.526
ENSCSEG00000005258	arl13b	50	32.164	ENSCSEG00000003101	arf3b	90	32.164
ENSCSEG00000005258	arl13b	73	40.070	ENSCSEG00000002533	arl13a	56	44.068
ENSCSEG00000005258	arl13b	53	38.889	ENSCSEG00000016811	arl2	93	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000005258	arl13b	100	79.661	ENSAPOG00000013256	arl13b	100	80.630	Acanthochromis_polyacanthus
ENSCSEG00000005258	arl13b	99	81.265	ENSACIG00000017582	arl13b	95	96.507	Amphilophus_citrinellus
ENSCSEG00000005258	arl13b	100	79.419	ENSAOCG00000002828	arl13b	100	80.387	Amphiprion_ocellaris
ENSCSEG00000005258	arl13b	99	79.795	ENSAPEG00000014654	arl13b	100	80.357	Amphiprion_percula
ENSCSEG00000005258	arl13b	95	79.798	ENSATEG00000017586	arl13b	97	78.030	Anabas_testudineus
ENSCSEG00000005258	arl13b	98	59.615	ENSACAG00000000523	ARL13B	65	74.265	Anolis_carolinensis
ENSCSEG00000005258	arl13b	99	76.284	ENSACLG00000024227	arl13b	91	95.794	Astatotilapia_calliptera
ENSCSEG00000005258	arl13b	99	72.837	ENSAMXG00000042824	arl13b	100	71.899	Astyanax_mexicanus
ENSCSEG00000005258	arl13b	95	56.633	ENSCAPG00000006764	ARL13B	57	82.266	Cavia_aperea
ENSCSEG00000005258	arl13b	99	56.265	ENSCPOG00000002558	ARL13B	82	60.127	Cavia_porcellus
ENSCSEG00000005258	arl13b	95	58.392	ENSCLAG00000006379	ARL13B	99	59.615	Chinchilla_lanigera
ENSCSEG00000005258	arl13b	99	59.862	ENSCPBG00000005599	ARL13B	99	60.508	Chrysemys_picta_bellii
ENSCSEG00000005258	arl13b	99	76.329	ENSCVAG00000001545	arl13b	91	94.323	Cyprinodon_variegatus
ENSCSEG00000005258	arl13b	99	72.087	ENSDARG00000012763	arl13b	88	92.576	Danio_rerio
ENSCSEG00000005258	arl13b	68	54.701	ENSEBUG00000006528	arl13b	87	54.701	Eptatretus_burgeri
ENSCSEG00000005258	arl13b	99	57.991	ENSEEUG00000010823	ARL13B	74	75.000	Erinaceus_europaeus
ENSCSEG00000005258	arl13b	98	57.463	ENSFALG00000001654	ARL13B	99	55.831	Ficedula_albicollis
ENSCSEG00000005258	arl13b	99	59.677	ENSFDAG00000006556	ARL13B	99	61.072	Fukomys_damarensis
ENSCSEG00000005258	arl13b	99	74.809	ENSFHEG00000016049	arl13b	100	76.650	Fundulus_heteroclitus
ENSCSEG00000005258	arl13b	95	65.128	ENSGMOG00000018628	arl13b	99	78.195	Gadus_morhua
ENSCSEG00000005258	arl13b	99	75.184	ENSGAFG00000000025	arl13b	86	93.913	Gambusia_affinis
ENSCSEG00000005258	arl13b	100	76.284	ENSGACG00000014228	arl13b	100	75.182	Gasterosteus_aculeatus
ENSCSEG00000005258	arl13b	99	57.848	ENSGAGG00000019336	ARL13B	99	59.584	Gopherus_agassizii
ENSCSEG00000005258	arl13b	99	79.612	ENSHBUG00000020619	arl13b	99	80.825	Haplochromis_burtoni
ENSCSEG00000005258	arl13b	99	77.436	ENSHCOG00000006106	arl13b	100	75.959	Hippocampus_comes
ENSCSEG00000005258	arl13b	100	77.616	ENSKMAG00000001122	arl13b	99	79.903	Kryptolebias_marmoratus
ENSCSEG00000005258	arl13b	100	77.590	ENSLBEG00000014612	arl13b	100	77.349	Labrus_bergylta
ENSCSEG00000005258	arl13b	75	89.720	ENSLOCG00000010465	arl13b	66	78.819	Lepisosteus_oculatus
ENSCSEG00000005258	arl13b	100	80.241	ENSMAMG00000021452	arl13b	100	80.000	Mastacembelus_armatus
ENSCSEG00000005258	arl13b	99	79.369	ENSMZEG00005017827	arl13b	99	80.583	Maylandia_zebra
ENSCSEG00000005258	arl13b	100	75.426	ENSMMOG00000010253	arl13b	100	74.092	Mola_mola
ENSCSEG00000005258	arl13b	89	88.278	ENSMALG00000014655	arl13b	97	88.278	Monopterus_albus
ENSCSEG00000005258	arl13b	99	59.217	MGP_CAROLIEiJ_G0020856	Arl13b	99	58.275	Mus_caroli
ENSCSEG00000005258	arl13b	99	60.981	ENSMUSG00000022911	Arl13b	99	58.275	Mus_musculus
ENSCSEG00000005258	arl13b	99	62.704	MGP_PahariEiJ_G0016561	Arl13b	99	61.628	Mus_pahari
ENSCSEG00000005258	arl13b	99	60.280	MGP_SPRETEiJ_G0021763	Arl13b	99	60.930	Mus_spretus
ENSCSEG00000005258	arl13b	95	60.488	ENSMLUG00000017473	ARL13B	96	61.463	Myotis_lucifugus
ENSCSEG00000005258	arl13b	99	77.751	ENSNBRG00000004078	arl13b	92	96.957	Neolamprologus_brichardi
ENSCSEG00000005258	arl13b	98	59.259	ENSNLEG00000001772	ARL13B	99	58.645	Nomascus_leucogenys
ENSCSEG00000005258	arl13b	78	65.587	ENSMEUG00000008036	-	61	65.587	Notamacropus_eugenii
ENSCSEG00000005258	arl13b	99	61.072	ENSODEG00000011381	ARL13B	99	60.373	Octodon_degus
ENSCSEG00000005258	arl13b	81	96.943	ENSONIG00000001864	arl13b	99	76.959	Oreochromis_niloticus
ENSCSEG00000005258	arl13b	100	77.561	ENSORLG00000006350	arl13b	91	96.070	Oryzias_latipes
ENSCSEG00000005258	arl13b	100	77.073	ENSORLG00020013754	arl13b	100	78.293	Oryzias_latipes_hni
ENSCSEG00000005258	arl13b	100	77.561	ENSORLG00015012586	arl13b	100	77.073	Oryzias_latipes_hsok
ENSCSEG00000005258	arl13b	63	91.244	ENSOMEG00000010187	arl13b	90	91.342	Oryzias_melastigma
ENSCSEG00000005258	arl13b	98	60.911	ENSPSIG00000018115	ARL13B	68	75.986	Pelodiscus_sinensis
ENSCSEG00000005258	arl13b	100	78.795	ENSPMGG00000004584	arl13b	100	78.072	Periophthalmus_magnuspinnatus
ENSCSEG00000005258	arl13b	98	48.434	ENSPCIG00000026984	ARL13B	95	47.962	Phascolarctos_cinereus
ENSCSEG00000005258	arl13b	99	76.098	ENSPFOG00000005379	arl13b	99	77.017	Poecilia_formosa
ENSCSEG00000005258	arl13b	99	75.835	ENSPLAG00000008699	arl13b	100	76.923	Poecilia_latipinna
ENSCSEG00000005258	arl13b	96	75.000	ENSPMEG00000015387	arl13b	99	77.354	Poecilia_mexicana
ENSCSEG00000005258	arl13b	99	75.669	ENSPREG00000006291	arl13b	99	77.859	Poecilia_reticulata
ENSCSEG00000005258	arl13b	95	77.436	ENSPNYG00000022879	arl13b	98	75.641	Pundamilia_nyererei
ENSCSEG00000005258	arl13b	99	72.048	ENSPNAG00000003803	arl13b	99	72.947	Pygocentrus_nattereri
ENSCSEG00000005258	arl13b	70	66.803	ENSSFOG00015023057	arl13b	92	66.803	Scleropages_formosus
ENSCSEG00000005258	arl13b	66	83.111	ENSSFOG00015005491	arl13b	88	83.111	Scleropages_formosus
ENSCSEG00000005258	arl13b	100	74.820	ENSSMAG00000015450	arl13b	100	74.820	Scophthalmus_maximus
ENSCSEG00000005258	arl13b	98	81.586	ENSSDUG00000005560	arl13b	98	81.360	Seriola_dumerili
ENSCSEG00000005258	arl13b	99	81.679	ENSSLDG00000013361	arl13b	100	81.472	Seriola_lalandi_dorsalis
ENSCSEG00000005258	arl13b	99	60.890	ENSSARG00000003872	ARL13B	99	60.656	Sorex_araneus
ENSCSEG00000005258	arl13b	70	79.498	ENSSPUG00000006649	ARL13B	97	79.498	Sphenodon_punctatus
ENSCSEG00000005258	arl13b	98	80.206	ENSSPAG00000016442	arl13b	91	79.699	Stegastes_partitus
ENSCSEG00000005258	arl13b	99	58.741	ENSTGUG00000013493	ARL13B	99	56.573	Taeniopygia_guttata
ENSCSEG00000005258	arl13b	99	51.304	ENSTRUG00000013035	-	89	73.043	Takifugu_rubripes
ENSCSEG00000005258	arl13b	61	73.077	ENSTRUG00000003641	arl13b	79	73.077	Takifugu_rubripes
ENSCSEG00000005258	arl13b	99	55.164	ENSVVUG00000021511	ARL13B	99	57.042	Vulpes_vulpes
ENSCSEG00000005258	arl13b	61	41.232	ENSXETG00000026166	arl13a	50	41.706	Xenopus_tropicalis
ENSCSEG00000005258	arl13b	99	58.239	ENSXETG00000032383	ARL13B	99	73.626	Xenopus_tropicalis
ENSCSEG00000005258	arl13b	99	74.817	ENSXCOG00000016955	arl13b	99	73.839	Xiphophorus_couchianus
ENSCSEG00000005258	arl13b	99	75.258	ENSXMAG00000002089	arl13b	100	76.410	Xiphophorus_maculatus