EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000005478 (Gene tree)
Gene ID: 107989418
Gene Symbol: -
Alias: -
Full Name: zinc finger protein 62 homolog
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 8525 bases
Position: chr13:10277322-10285846
Accession: 107989418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000008584	zf-C2H2	PF00096.26	1.5e-45	1	7
ENSCSEP00000008584	zf-C2H2	PF00096.26	1.5e-45	2	7
ENSCSEP00000008584	zf-C2H2	PF00096.26	1.5e-45	3	7
ENSCSEP00000008584	zf-C2H2	PF00096.26	1.5e-45	4	7
ENSCSEP00000008584	zf-C2H2	PF00096.26	1.5e-45	5	7
ENSCSEP00000008584	zf-C2H2	PF00096.26	1.5e-45	6	7
ENSCSEP00000008584	zf-C2H2	PF00096.26	1.5e-45	7	7
ENSCSEP00000008584	zf-met	PF12874.7	7.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000008673	-	5582	XM_017037888	ENSCSEP00000008584	1323 (aa)	XP_016893377	UPI000D62F552

Gene Model

Click here to download ENSCSEG00000005478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000005478's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000005478	-	50	31.982	ENSCSEG00000003757	-	99	30.802
ENSCSEG00000005478	-	50	34.483	ENSCSEG00000005491	-	92	34.483

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000005478	-	51	30.449	ENSACIG00000011541	-	72	30.449	Amphilophus_citrinellus
ENSCSEG00000005478	-	50	36.765	ENSAMXG00000035127	-	96	32.922	Astyanax_mexicanus
ENSCSEG00000005478	-	53	39.053	ENSCVAG00000008535	-	72	39.053	Cyprinodon_variegatus
ENSCSEG00000005478	-	51	37.963	ENSCVAG00000003497	-	90	37.714	Cyprinodon_variegatus
ENSCSEG00000005478	-	50	37.821	ENSFHEG00000008029	-	96	39.007	Fundulus_heteroclitus
ENSCSEG00000005478	-	51	39.394	ENSFHEG00000002638	-	69	39.394	Fundulus_heteroclitus
ENSCSEG00000005478	-	50	38.144	ENSGAFG00000011884	-	94	35.227	Gambusia_affinis
ENSCSEG00000005478	-	51	37.824	ENSGAFG00000013934	-	99	30.952	Gambusia_affinis
ENSCSEG00000005478	-	51	39.157	ENSKMAG00000006450	-	95	39.157	Kryptolebias_marmoratus
ENSCSEG00000005478	-	50	40.278	ENSLBEG00000015694	-	83	39.583	Labrus_bergylta
ENSCSEG00000005478	-	52	30.689	ENSLBEG00000000373	-	72	30.689	Labrus_bergylta
ENSCSEG00000005478	-	50	34.359	ENSLBEG00000018970	-	78	34.359	Labrus_bergylta
ENSCSEG00000005478	-	52	42.647	ENSMMOG00000016958	-	98	33.495	Mola_mola
ENSCSEG00000005478	-	50	35.000	ENSORLG00020010250	-	86	39.103	Oryzias_latipes_hni
ENSCSEG00000005478	-	50	37.436	ENSORLG00020020419	-	78	37.436	Oryzias_latipes_hni
ENSCSEG00000005478	-	51	45.562	ENSOMEG00000021945	-	87	43.089	Oryzias_melastigma
ENSCSEG00000005478	-	50	43.624	ENSPFOG00000007728	-	100	30.469	Poecilia_formosa
ENSCSEG00000005478	-	50	36.154	ENSPLAG00000018294	-	96	36.154	Poecilia_latipinna
ENSCSEG00000005478	-	50	34.146	ENSPLAG00000010379	-	60	34.146	Poecilia_latipinna
ENSCSEG00000005478	-	50	40.351	ENSPMEG00000012698	-	88	32.917	Poecilia_mexicana
ENSCSEG00000005478	-	52	37.037	ENSSDUG00000020810	-	86	37.037	Seriola_dumerili
ENSCSEG00000005478	-	50	39.241	ENSSPAG00000013118	-	60	38.824	Stegastes_partitus
ENSCSEG00000005478	-	50	35.211	ENSXCOG00000003435	-	85	35.211	Xiphophorus_couchianus
ENSCSEG00000005478	-	50	32.797	ENSXMAG00000023184	-	88	39.153	Xiphophorus_maculatus
ENSCSEG00000005478	-	50	33.745	ENSXMAG00000027664	-	98	33.745	Xiphophorus_maculatus
ENSCSEG00000005478	-	56	30.208	ENSXMAG00000029713	-	82	30.208	Xiphophorus_maculatus
ENSCSEG00000005478	-	50	38.095	ENSXMAG00000029039	-	70	44.068	Xiphophorus_maculatus
ENSCSEG00000005478	-	51	30.544	ENSXMAG00000025968	-	80	30.544	Xiphophorus_maculatus
ENSCSEG00000005478	-	51	40.909	ENSXMAG00000029641	-	82	40.909	Xiphophorus_maculatus