EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000005536 (Gene tree)
Gene ID: 103380125
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 7698 bases
Position: chr6:11175776-11183473
Accession: 103380125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000008693	PRP4	PF08799.11	2.8e-13	1	1
ENSCSEP00000008685	PRP4	PF08799.11	3e-13	1	1
ENSCSEP00000008663	PRP4	PF08799.11	3.1e-13	1	1
ENSCSEP00000008685	Prp18	PF02840.15	1e-61	1	1
ENSCSEP00000008663	Prp18	PF02840.15	1e-61	1	1
ENSCSEP00000008693	Prp18	PF02840.15	3.6e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000008755	-	3727	XM_008311944	ENSCSEP00000008663	351 (aa)	XP_008310166	UPI000496B93D
ENSCSET00000008777	-	3700	XM_008311945	ENSCSEP00000008685	342 (aa)	XP_008310167	UPI000497FD11
ENSCSET00000008785	-	969	-	ENSCSEP00000008693	322 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000005536's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000005536's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000005536	prpf18	99	83.041	ENSG00000165630	PRPF18	100	83.041	Homo_sapiens
ENSCSEG00000005536	prpf18	99	92.669	ENSAPOG00000024177	prpf18	100	92.669	Acanthochromis_polyacanthus
ENSCSEG00000005536	prpf18	99	82.456	ENSAMEG00000013591	-	100	82.456	Ailuropoda_melanoleuca
ENSCSEG00000005536	prpf18	99	90.616	ENSACIG00000001186	prpf18	100	90.616	Amphilophus_citrinellus
ENSCSEG00000005536	prpf18	98	91.916	ENSAOCG00000006572	prpf18	94	91.520	Amphiprion_ocellaris
ENSCSEG00000005536	prpf18	99	92.082	ENSAPEG00000004564	prpf18	100	92.082	Amphiprion_percula
ENSCSEG00000005536	prpf18	99	92.082	ENSATEG00000000303	prpf18	100	92.082	Anabas_testudineus
ENSCSEG00000005536	prpf18	99	80.882	ENSAPLG00000003387	-	99	80.882	Anas_platyrhynchos
ENSCSEG00000005536	prpf18	99	82.267	ENSACAG00000000818	-	100	82.267	Anolis_carolinensis
ENSCSEG00000005536	prpf18	99	83.041	ENSANAG00000037445	-	100	83.041	Aotus_nancymaae
ENSCSEG00000005536	prpf18	99	89.736	ENSACLG00000026296	prpf18	100	89.736	Astatotilapia_calliptera
ENSCSEG00000005536	prpf18	99	87.429	ENSAMXG00000012848	prpf18	100	87.429	Astyanax_mexicanus
ENSCSEG00000005536	prpf18	99	82.749	ENSBTAG00000017244	PRPF18	100	82.749	Bos_taurus
ENSCSEG00000005536	prpf18	98	40.171	WBGene00009320	F32B6.3	97	40.171	Caenorhabditis_elegans
ENSCSEG00000005536	prpf18	99	83.041	ENSCJAG00000009432	-	100	83.041	Callithrix_jacchus
ENSCSEG00000005536	prpf18	99	82.456	ENSCAFG00000004735	-	100	82.456	Canis_familiaris
ENSCSEG00000005536	prpf18	99	82.456	ENSCAFG00020007712	-	100	82.456	Canis_lupus_dingo
ENSCSEG00000005536	prpf18	99	82.749	ENSCHIG00000000499	-	100	82.749	Capra_hircus
ENSCSEG00000005536	prpf18	99	82.456	ENSTSYG00000003517	-	100	82.456	Carlito_syrichta
ENSCSEG00000005536	prpf18	99	83.041	ENSCPOG00000021069	-	100	83.041	Cavia_porcellus
ENSCSEG00000005536	prpf18	99	83.041	ENSCCAG00000036822	-	100	83.041	Cebus_capucinus
ENSCSEG00000005536	prpf18	99	72.515	ENSCATG00000016633	-	100	72.515	Cercocebus_atys
ENSCSEG00000005536	prpf18	99	82.749	ENSCLAG00000011770	-	100	82.749	Chinchilla_lanigera
ENSCSEG00000005536	prpf18	99	81.481	ENSCSAG00000013109	-	100	81.481	Chlorocebus_sabaeus
ENSCSEG00000005536	prpf18	99	78.933	ENSCPBG00000003100	-	100	79.213	Chrysemys_picta_bellii
ENSCSEG00000005536	prpf18	99	55.588	ENSCING00000020481	-	97	55.588	Ciona_intestinalis
ENSCSEG00000005536	prpf18	99	55.425	ENSCSAVG00000010546	-	99	55.425	Ciona_savignyi
ENSCSEG00000005536	prpf18	99	83.041	ENSCANG00000034900	-	100	83.041	Colobus_angolensis_palliatus
ENSCSEG00000005536	prpf18	99	82.749	ENSCGRG00001023665	Prpf18	100	82.749	Cricetulus_griseus_chok1gshd
ENSCSEG00000005536	prpf18	99	82.749	ENSCGRG00000014690	Prpf18	100	82.749	Cricetulus_griseus_crigri
ENSCSEG00000005536	prpf18	99	89.150	ENSCVAG00000012401	prpf18	100	89.150	Cyprinodon_variegatus
ENSCSEG00000005536	prpf18	99	87.427	ENSDARG00000058306	prpf18	100	87.427	Danio_rerio
ENSCSEG00000005536	prpf18	99	82.749	ENSDNOG00000035607	-	100	82.749	Dasypus_novemcinctus
ENSCSEG00000005536	prpf18	99	82.164	ENSDORG00000000858	Prpf18	100	82.164	Dipodomys_ordii
ENSCSEG00000005536	prpf18	99	51.479	FBgn0027784	Prp18	98	51.479	Drosophila_melanogaster
ENSCSEG00000005536	prpf18	99	73.977	ENSETEG00000015060	-	100	73.977	Echinops_telfairi
ENSCSEG00000005536	prpf18	99	68.012	ENSEBUG00000016502	prpf18	99	68.012	Eptatretus_burgeri
ENSCSEG00000005536	prpf18	99	82.749	ENSEASG00005019373	-	100	82.749	Equus_asinus_asinus
ENSCSEG00000005536	prpf18	100	82.622	ENSECAG00000006997	PRPF18	100	82.749	Equus_caballus
ENSCSEG00000005536	prpf18	92	50.633	ENSEEUG00000001171	-	100	50.633	Erinaceus_europaeus
ENSCSEG00000005536	prpf18	99	87.464	ENSELUG00000022190	prpf18	100	87.464	Esox_lucius
ENSCSEG00000005536	prpf18	99	82.164	ENSFCAG00000004436	-	100	82.164	Felis_catus
ENSCSEG00000005536	prpf18	92	78.769	ENSFALG00000001912	-	97	78.769	Ficedula_albicollis
ENSCSEG00000005536	prpf18	99	55.587	ENSFDAG00000010713	-	97	55.587	Fukomys_damarensis
ENSCSEG00000005536	prpf18	93	85.000	ENSFDAG00000014026	-	100	85.000	Fukomys_damarensis
ENSCSEG00000005536	prpf18	80	92.308	ENSFHEG00000020125	prpf18	100	92.308	Fundulus_heteroclitus
ENSCSEG00000005536	prpf18	99	85.588	ENSGMOG00000012210	prpf18	99	85.588	Gadus_morhua
ENSCSEG00000005536	prpf18	99	81.871	ENSGALG00000043593	-	100	81.871	Gallus_gallus
ENSCSEG00000005536	prpf18	99	89.150	ENSGAFG00000006034	prpf18	100	89.150	Gambusia_affinis
ENSCSEG00000005536	prpf18	99	91.496	ENSGACG00000012232	prpf18	100	91.496	Gasterosteus_aculeatus
ENSCSEG00000005536	prpf18	99	81.871	ENSGAGG00000016878	-	100	81.871	Gopherus_agassizii
ENSCSEG00000005536	prpf18	92	81.962	ENSGGOG00000025188	-	96	81.962	Gorilla_gorilla
ENSCSEG00000005536	prpf18	99	89.736	ENSHBUG00000010264	prpf18	100	89.736	Haplochromis_burtoni
ENSCSEG00000005536	prpf18	99	82.456	ENSHGLG00000018534	PRPF18	100	82.456	Heterocephalus_glaber_female
ENSCSEG00000005536	prpf18	93	84.688	ENSHGLG00100012161	-	98	84.688	Heterocephalus_glaber_male
ENSCSEG00000005536	prpf18	99	92.082	ENSHCOG00000015987	prpf18	100	92.082	Hippocampus_comes
ENSCSEG00000005536	prpf18	99	82.720	ENSIPUG00000007432	prpf18	100	82.720	Ictalurus_punctatus
ENSCSEG00000005536	prpf18	99	82.456	ENSSTOG00000008735	-	100	82.456	Ictidomys_tridecemlineatus
ENSCSEG00000005536	prpf18	99	83.041	ENSJJAG00000024041	-	100	83.041	Jaculus_jaculus
ENSCSEG00000005536	prpf18	100	64.087	ENSJJAG00000015191	-	100	64.087	Jaculus_jaculus
ENSCSEG00000005536	prpf18	100	89.130	ENSKMAG00000012124	prpf18	100	89.130	Kryptolebias_marmoratus
ENSCSEG00000005536	prpf18	99	87.390	ENSLBEG00000028466	prpf18	100	87.390	Labrus_bergylta
ENSCSEG00000005536	prpf18	99	82.164	ENSLACG00000009885	prpf18	100	82.456	Latimeria_chalumnae
ENSCSEG00000005536	prpf18	99	86.550	ENSLOCG00000016736	prpf18	100	86.550	Lepisosteus_oculatus
ENSCSEG00000005536	prpf18	99	83.041	ENSLAFG00000007753	-	100	83.041	Loxodonta_africana
ENSCSEG00000005536	prpf18	99	83.041	ENSMFAG00000000540	-	100	83.041	Macaca_fascicularis
ENSCSEG00000005536	prpf18	99	83.041	ENSMMUG00000015071	PRPF18	99	86.335	Macaca_mulatta
ENSCSEG00000005536	prpf18	99	83.041	ENSMNEG00000024679	-	100	83.041	Macaca_nemestrina
ENSCSEG00000005536	prpf18	99	67.836	ENSMLEG00000031715	-	100	67.836	Mandrillus_leucophaeus
ENSCSEG00000005536	prpf18	99	91.496	ENSMAMG00000006610	prpf18	100	91.496	Mastacembelus_armatus
ENSCSEG00000005536	prpf18	99	89.736	ENSMZEG00005019392	prpf18	100	89.736	Maylandia_zebra
ENSCSEG00000005536	prpf18	99	81.871	ENSMGAG00000005023	-	100	81.871	Meleagris_gallopavo
ENSCSEG00000005536	prpf18	99	82.749	ENSMICG00000006572	-	100	82.749	Microcebus_murinus
ENSCSEG00000005536	prpf18	99	83.041	ENSMOCG00000021468	Prpf18	100	83.041	Microtus_ochrogaster
ENSCSEG00000005536	prpf18	99	90.323	ENSMMOG00000013012	prpf18	100	90.323	Mola_mola
ENSCSEG00000005536	prpf18	99	75.862	ENSMODG00000016902	-	95	75.862	Monodelphis_domestica
ENSCSEG00000005536	prpf18	99	75.439	ENSMODG00000024043	-	100	75.439	Monodelphis_domestica
ENSCSEG00000005536	prpf18	100	82.249	ENSMALG00000005486	prpf18	100	84.058	Monopterus_albus
ENSCSEG00000005536	prpf18	99	82.456	MGP_CAROLIEiJ_G0023143	Prpf18	100	94.521	Mus_caroli
ENSCSEG00000005536	prpf18	99	82.749	ENSMUSG00000039449	Prpf18	100	94.521	Mus_musculus
ENSCSEG00000005536	prpf18	99	82.749	MGP_PahariEiJ_G0019203	Prpf18	100	94.521	Mus_pahari
ENSCSEG00000005536	prpf18	99	82.456	MGP_SPRETEiJ_G0024061	Prpf18	100	94.521	Mus_spretus
ENSCSEG00000005536	prpf18	99	82.164	ENSMPUG00000000938	-	100	82.164	Mustela_putorius_furo
ENSCSEG00000005536	prpf18	99	82.164	ENSMLUG00000009200	-	100	82.164	Myotis_lucifugus
ENSCSEG00000005536	prpf18	99	83.041	ENSNGAG00000012500	-	100	83.041	Nannospalax_galili
ENSCSEG00000005536	prpf18	68	81.034	ENSNGAG00000023550	-	83	81.034	Nannospalax_galili
ENSCSEG00000005536	prpf18	99	90.029	ENSNBRG00000001778	prpf18	100	90.029	Neolamprologus_brichardi
ENSCSEG00000005536	prpf18	99	83.041	ENSNLEG00000012186	-	100	83.041	Nomascus_leucogenys
ENSCSEG00000005536	prpf18	76	72.587	ENSMEUG00000005032	-	75	72.587	Notamacropus_eugenii
ENSCSEG00000005536	prpf18	77	63.396	ENSOPRG00000002153	-	100	63.396	Ochotona_princeps
ENSCSEG00000005536	prpf18	99	82.164	ENSODEG00000003770	-	100	82.164	Octodon_degus
ENSCSEG00000005536	prpf18	98	89.820	ENSONIG00000014854	prpf18	96	89.820	Oreochromis_niloticus
ENSCSEG00000005536	prpf18	99	82.456	ENSOANG00000015404	-	100	82.456	Ornithorhynchus_anatinus
ENSCSEG00000005536	prpf18	99	82.749	ENSOCUG00000027756	-	97	83.384	Oryctolagus_cuniculus
ENSCSEG00000005536	prpf18	99	90.286	ENSORLG00000010293	prpf18	100	90.286	Oryzias_latipes
ENSCSEG00000005536	prpf18	100	90.373	ENSORLG00020001530	prpf18	100	90.616	Oryzias_latipes_hni
ENSCSEG00000005536	prpf18	99	90.029	ENSORLG00015013705	prpf18	100	90.029	Oryzias_latipes_hsok
ENSCSEG00000005536	prpf18	99	91.202	ENSOMEG00000009167	prpf18	100	91.202	Oryzias_melastigma
ENSCSEG00000005536	prpf18	99	82.164	ENSOGAG00000007294	-	100	82.164	Otolemur_garnettii
ENSCSEG00000005536	prpf18	99	81.765	ENSOARG00000006243	-	100	81.197	Ovis_aries
ENSCSEG00000005536	prpf18	99	83.041	ENSPPAG00000041959	-	100	83.041	Pan_paniscus
ENSCSEG00000005536	prpf18	99	82.164	ENSPPRG00000000107	-	100	82.164	Panthera_pardus
ENSCSEG00000005536	prpf18	99	82.164	ENSPTIG00000021094	-	100	82.164	Panthera_tigris_altaica
ENSCSEG00000005536	prpf18	99	83.041	ENSPTRG00000002306	PRPF18	100	83.041	Pan_troglodytes
ENSCSEG00000005536	prpf18	99	82.749	ENSPANG00000023346	-	100	82.749	Papio_anubis
ENSCSEG00000005536	prpf18	100	85.511	ENSPKIG00000014128	prpf18	96	85.511	Paramormyrops_kingsleyae
ENSCSEG00000005536	prpf18	99	82.456	ENSPSIG00000016064	-	100	82.456	Pelodiscus_sinensis
ENSCSEG00000005536	prpf18	100	88.073	ENSPMGG00000016486	prpf18	100	88.073	Periophthalmus_magnuspinnatus
ENSCSEG00000005536	prpf18	99	82.749	ENSPEMG00000013704	Prpf18	100	82.749	Peromyscus_maniculatus_bairdii
ENSCSEG00000005536	prpf18	99	72.911	ENSPMAG00000000204	prpf18	100	72.911	Petromyzon_marinus
ENSCSEG00000005536	prpf18	92	81.329	ENSPCIG00000012963	-	99	81.329	Phascolarctos_cinereus
ENSCSEG00000005536	prpf18	99	88.000	ENSPFOG00000017611	prpf18	100	88.000	Poecilia_formosa
ENSCSEG00000005536	prpf18	99	88.270	ENSPLAG00000000369	prpf18	100	88.270	Poecilia_latipinna
ENSCSEG00000005536	prpf18	99	88.270	ENSPMEG00000005183	prpf18	100	88.270	Poecilia_mexicana
ENSCSEG00000005536	prpf18	99	88.856	ENSPREG00000015232	prpf18	100	88.856	Poecilia_reticulata
ENSCSEG00000005536	prpf18	99	82.749	ENSPPYG00000002101	PRPF18	100	82.749	Pongo_abelii
ENSCSEG00000005536	prpf18	99	65.789	ENSPCAG00000010833	-	100	65.789	Procavia_capensis
ENSCSEG00000005536	prpf18	99	77.713	ENSPCOG00000013057	-	100	77.713	Propithecus_coquereli
ENSCSEG00000005536	prpf18	100	49.711	ENSPVAG00000002947	-	100	50.292	Pteropus_vampyrus
ENSCSEG00000005536	prpf18	99	90.029	ENSPNYG00000003554	prpf18	100	90.029	Pundamilia_nyererei
ENSCSEG00000005536	prpf18	99	86.040	ENSPNAG00000023151	prpf18	100	86.040	Pygocentrus_nattereri
ENSCSEG00000005536	prpf18	99	82.749	ENSRNOG00000018396	Prpf18	100	82.749	Rattus_norvegicus
ENSCSEG00000005536	prpf18	100	83.591	ENSRBIG00000028028	-	100	83.591	Rhinopithecus_bieti
ENSCSEG00000005536	prpf18	99	83.041	ENSRROG00000040695	-	100	83.041	Rhinopithecus_roxellana
ENSCSEG00000005536	prpf18	99	83.041	ENSSBOG00000034482	-	100	83.041	Saimiri_boliviensis_boliviensis
ENSCSEG00000005536	prpf18	99	69.298	ENSSHAG00000009669	-	100	69.298	Sarcophilus_harrisii
ENSCSEG00000005536	prpf18	99	82.749	ENSSHAG00000016463	-	100	82.749	Sarcophilus_harrisii
ENSCSEG00000005536	prpf18	100	84.098	ENSSFOG00015022118	prpf18	100	84.098	Scleropages_formosus
ENSCSEG00000005536	prpf18	77	46.212	ENSSFOG00015021154	-	89	53.333	Scleropages_formosus
ENSCSEG00000005536	prpf18	99	90.029	ENSSMAG00000005308	prpf18	100	90.029	Scophthalmus_maximus
ENSCSEG00000005536	prpf18	99	93.255	ENSSDUG00000015428	prpf18	100	93.255	Seriola_dumerili
ENSCSEG00000005536	prpf18	99	93.255	ENSSLDG00000023989	prpf18	100	93.255	Seriola_lalandi_dorsalis
ENSCSEG00000005536	prpf18	85	69.600	ENSSARG00000005307	-	100	54.094	Sorex_araneus
ENSCSEG00000005536	prpf18	100	81.714	ENSSPUG00000002619	-	100	82.164	Sphenodon_punctatus
ENSCSEG00000005536	prpf18	99	92.669	ENSSPAG00000019502	prpf18	100	92.669	Stegastes_partitus
ENSCSEG00000005536	prpf18	100	83.282	ENSSSCG00000026354	-	100	83.282	Sus_scrofa
ENSCSEG00000005536	prpf18	99	81.579	ENSTGUG00000002286	-	100	81.579	Taeniopygia_guttata
ENSCSEG00000005536	prpf18	99	86.217	ENSTRUG00000011278	prpf18	100	86.217	Takifugu_rubripes
ENSCSEG00000005536	prpf18	99	87.977	ENSTNIG00000000911	prpf18	100	87.977	Tetraodon_nigroviridis
ENSCSEG00000005536	prpf18	79	98.718	ENSTBEG00000013011	-	79	98.718	Tupaia_belangeri
ENSCSEG00000005536	prpf18	99	83.041	ENSTTRG00000011117	PRPF18	100	83.041	Tursiops_truncatus
ENSCSEG00000005536	prpf18	91	84.887	ENSUAMG00000001815	-	93	84.887	Ursus_americanus
ENSCSEG00000005536	prpf18	99	78.070	ENSUMAG00000012329	-	100	78.070	Ursus_maritimus
ENSCSEG00000005536	prpf18	99	76.901	ENSVPAG00000011486	-	100	76.901	Vicugna_pacos
ENSCSEG00000005536	prpf18	99	82.456	ENSVVUG00000005453	-	100	82.456	Vulpes_vulpes
ENSCSEG00000005536	prpf18	99	76.232	ENSXETG00000024057	prpf18	100	76.232	Xenopus_tropicalis
ENSCSEG00000005536	prpf18	99	88.338	ENSXCOG00000020414	prpf18	100	88.338	Xiphophorus_couchianus
ENSCSEG00000005536	prpf18	99	88.856	ENSXMAG00000004713	prpf18	91	88.856	Xiphophorus_maculatus