EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000005798 (Gene tree)
Gene ID: 103377867
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 5520 bases
Position: chr4:7186120-7191639
Accession: 103377867
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000009046	SBDS	PF01172.18	6e-34	1	1
ENSCSEP00000009046	SBDS_C	PF09377.10	1.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000009152	-	5027	XM_008308836	ENSCSEP00000009046	249 (aa)	XP_008307058	UPI0004963C8A

Gene Model

Click here to download ENSCSEG00000005798's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000005798's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000005798	sbds	100	81.526	ENSG00000126524	SBDS	97	85.542	Homo_sapiens
ENSCSEG00000005798	sbds	100	95.984	ENSAPOG00000014285	sbds	100	95.984	Acanthochromis_polyacanthus
ENSCSEG00000005798	sbds	100	81.526	ENSAMEG00000018167	SBDS	99	81.526	Ailuropoda_melanoleuca
ENSCSEG00000005798	sbds	100	94.444	ENSACIG00000007308	sbds	100	94.444	Amphilophus_citrinellus
ENSCSEG00000005798	sbds	100	97.189	ENSAOCG00000016770	sbds	100	97.189	Amphiprion_ocellaris
ENSCSEG00000005798	sbds	100	96.787	ENSAPEG00000015897	sbds	100	96.787	Amphiprion_percula
ENSCSEG00000005798	sbds	100	95.984	ENSATEG00000006901	sbds	100	95.984	Anabas_testudineus
ENSCSEG00000005798	sbds	83	80.097	ENSANAG00000037501	-	99	80.097	Aotus_nancymaae
ENSCSEG00000005798	sbds	93	74.892	ENSANAG00000024342	-	97	74.892	Aotus_nancymaae
ENSCSEG00000005798	sbds	100	94.779	ENSACLG00000018750	sbds	100	94.779	Astatotilapia_calliptera
ENSCSEG00000005798	sbds	100	89.157	ENSAMXG00000005361	sbds	99	89.157	Astyanax_mexicanus
ENSCSEG00000005798	sbds	100	81.526	ENSBTAG00000004051	SBDS	99	81.526	Bos_taurus
ENSCSEG00000005798	sbds	98	55.691	WBGene00021063	sbds-1	97	55.691	Caenorhabditis_elegans
ENSCSEG00000005798	sbds	100	81.526	ENSCJAG00000041007	SBDS	99	81.526	Callithrix_jacchus
ENSCSEG00000005798	sbds	100	79.681	ENSCAFG00000010797	SBDS	99	79.681	Canis_familiaris
ENSCSEG00000005798	sbds	100	81.526	ENSCAFG00020005357	SBDS	99	81.526	Canis_lupus_dingo
ENSCSEG00000005798	sbds	100	81.526	ENSCHIG00000026854	SBDS	99	81.526	Capra_hircus
ENSCSEG00000005798	sbds	100	81.526	ENSTSYG00000033822	SBDS	99	81.526	Carlito_syrichta
ENSCSEG00000005798	sbds	65	80.368	ENSCAPG00000006634	SBDS	99	80.368	Cavia_aperea
ENSCSEG00000005798	sbds	100	82.329	ENSCPOG00000036143	SBDS	99	82.329	Cavia_porcellus
ENSCSEG00000005798	sbds	100	81.526	ENSCCAG00000020671	SBDS	99	81.526	Cebus_capucinus
ENSCSEG00000005798	sbds	100	81.526	ENSCATG00000039026	SBDS	99	81.526	Cercocebus_atys
ENSCSEG00000005798	sbds	99	58.871	ENSCLAG00000002113	-	99	58.871	Chinchilla_lanigera
ENSCSEG00000005798	sbds	100	82.731	ENSCLAG00000005721	-	99	82.731	Chinchilla_lanigera
ENSCSEG00000005798	sbds	100	81.526	ENSCSAG00000018275	SBDS	99	81.526	Chlorocebus_sabaeus
ENSCSEG00000005798	sbds	100	76.707	ENSCHOG00000003795	SBDS	99	76.707	Choloepus_hoffmanni
ENSCSEG00000005798	sbds	100	85.141	ENSCPBG00000014893	SBDS	99	85.141	Chrysemys_picta_bellii
ENSCSEG00000005798	sbds	100	68.400	ENSCSAVG00000011811	-	100	68.400	Ciona_savignyi
ENSCSEG00000005798	sbds	100	81.124	ENSCANG00000032368	SBDS	99	81.124	Colobus_angolensis_palliatus
ENSCSEG00000005798	sbds	65	80.368	ENSCGRG00001019886	Sbds	99	80.368	Cricetulus_griseus_chok1gshd
ENSCSEG00000005798	sbds	83	81.068	ENSCGRG00000009211	Sbds	99	81.068	Cricetulus_griseus_crigri
ENSCSEG00000005798	sbds	100	91.968	ENSCVAG00000001053	sbds	100	91.968	Cyprinodon_variegatus
ENSCSEG00000005798	sbds	100	88.755	ENSDARG00000027803	sbds	99	88.755	Danio_rerio
ENSCSEG00000005798	sbds	100	81.526	ENSDNOG00000041174	SBDS	99	81.526	Dasypus_novemcinctus
ENSCSEG00000005798	sbds	100	82.731	ENSDORG00000026218	Sbds	99	82.731	Dipodomys_ordii
ENSCSEG00000005798	sbds	91	61.404	FBgn0035714	CG8549	99	61.044	Drosophila_melanogaster
ENSCSEG00000005798	sbds	93	56.897	ENSEBUG00000015780	sbds	99	56.897	Eptatretus_burgeri
ENSCSEG00000005798	sbds	100	81.526	ENSEASG00005008821	SBDS	99	81.526	Equus_asinus_asinus
ENSCSEG00000005798	sbds	100	81.526	ENSECAG00000008202	SBDS	99	81.526	Equus_caballus
ENSCSEG00000005798	sbds	84	62.981	ENSEEUG00000004768	SBDS	100	62.981	Erinaceus_europaeus
ENSCSEG00000005798	sbds	100	90.361	ENSELUG00000008382	sbds	99	90.361	Esox_lucius
ENSCSEG00000005798	sbds	100	81.526	ENSFCAG00000022142	SBDS	99	81.526	Felis_catus
ENSCSEG00000005798	sbds	100	85.141	ENSFALG00000013808	SBDS	99	85.141	Ficedula_albicollis
ENSCSEG00000005798	sbds	100	82.329	ENSFDAG00000018947	-	99	82.329	Fukomys_damarensis
ENSCSEG00000005798	sbds	99	91.093	ENSFHEG00000000708	sbds	99	91.093	Fundulus_heteroclitus
ENSCSEG00000005798	sbds	100	88.755	ENSGMOG00000018356	sbds	99	88.755	Gadus_morhua
ENSCSEG00000005798	sbds	100	82.731	ENSGALG00000027989	SBDS	99	82.731	Gallus_gallus
ENSCSEG00000005798	sbds	92	89.130	ENSGAFG00000014204	sbds	100	89.130	Gambusia_affinis
ENSCSEG00000005798	sbds	100	90.361	ENSGACG00000012697	sbds	100	90.361	Gasterosteus_aculeatus
ENSCSEG00000005798	sbds	86	85.446	ENSGAGG00000022402	SBDS	99	85.446	Gopherus_agassizii
ENSCSEG00000005798	sbds	96	63.750	ENSGGOG00000040023	-	92	63.750	Gorilla_gorilla
ENSCSEG00000005798	sbds	100	94.779	ENSHBUG00000002660	sbds	100	94.779	Haplochromis_burtoni
ENSCSEG00000005798	sbds	100	80.723	ENSHGLG00000009671	SBDS	99	80.723	Heterocephalus_glaber_female
ENSCSEG00000005798	sbds	100	80.723	ENSHGLG00100011332	SBDS	99	80.723	Heterocephalus_glaber_male
ENSCSEG00000005798	sbds	100	89.960	ENSHCOG00000018606	sbds	100	89.960	Hippocampus_comes
ENSCSEG00000005798	sbds	100	88.353	ENSIPUG00000006536	sbds	99	88.353	Ictalurus_punctatus
ENSCSEG00000005798	sbds	100	58.730	ENSJJAG00000003934	-	99	58.730	Jaculus_jaculus
ENSCSEG00000005798	sbds	100	79.920	ENSJJAG00000012033	-	99	79.920	Jaculus_jaculus
ENSCSEG00000005798	sbds	100	93.574	ENSKMAG00000018542	sbds	100	93.574	Kryptolebias_marmoratus
ENSCSEG00000005798	sbds	100	91.566	ENSLBEG00000016687	sbds	100	91.566	Labrus_bergylta
ENSCSEG00000005798	sbds	100	74.704	ENSLACG00000018916	SBDS	99	74.704	Latimeria_chalumnae
ENSCSEG00000005798	sbds	100	89.960	ENSLOCG00000004073	sbds	99	89.960	Lepisosteus_oculatus
ENSCSEG00000005798	sbds	100	81.124	ENSLAFG00000008763	SBDS	99	81.124	Loxodonta_africana
ENSCSEG00000005798	sbds	100	81.526	ENSMFAG00000032620	SBDS	99	81.526	Macaca_fascicularis
ENSCSEG00000005798	sbds	100	81.526	ENSMMUG00000045653	SBDS	99	81.526	Macaca_mulatta
ENSCSEG00000005798	sbds	100	81.526	ENSMNEG00000031523	SBDS	99	81.526	Macaca_nemestrina
ENSCSEG00000005798	sbds	100	64.822	ENSMLEG00000036826	SBDS	99	64.822	Mandrillus_leucophaeus
ENSCSEG00000005798	sbds	100	94.779	ENSMAMG00000016062	sbds	100	94.779	Mastacembelus_armatus
ENSCSEG00000005798	sbds	100	94.779	ENSMZEG00005024385	sbds	100	94.779	Maylandia_zebra
ENSCSEG00000005798	sbds	100	82.731	ENSMGAG00000002119	SBDS	99	82.731	Meleagris_gallopavo
ENSCSEG00000005798	sbds	100	66.667	ENSMAUG00000022214	-	100	66.667	Mesocricetus_auratus
ENSCSEG00000005798	sbds	100	81.526	ENSMICG00000014366	SBDS	99	81.526	Microcebus_murinus
ENSCSEG00000005798	sbds	100	81.928	ENSMOCG00000011739	Sbds	99	81.928	Microtus_ochrogaster
ENSCSEG00000005798	sbds	100	83.600	ENSMMOG00000005061	sbds	100	83.600	Mola_mola
ENSCSEG00000005798	sbds	100	82.731	ENSMODG00000006644	SBDS	99	82.731	Monodelphis_domestica
ENSCSEG00000005798	sbds	100	89.558	ENSMALG00000010219	sbds	100	89.558	Monopterus_albus
ENSCSEG00000005798	sbds	100	82.731	MGP_CAROLIEiJ_G0027800	Sbds	98	92.857	Mus_caroli
ENSCSEG00000005798	sbds	100	83.133	ENSMUSG00000025337	Sbds	98	92.857	Mus_musculus
ENSCSEG00000005798	sbds	100	82.731	MGP_PahariEiJ_G0024384	Sbds	98	92.857	Mus_pahari
ENSCSEG00000005798	sbds	100	83.133	MGP_SPRETEiJ_G0028798	Sbds	98	92.857	Mus_spretus
ENSCSEG00000005798	sbds	67	82.036	ENSMPUG00000016192	SBDS	96	82.036	Mustela_putorius_furo
ENSCSEG00000005798	sbds	73	76.796	ENSMLUG00000013575	SBDS	99	76.796	Myotis_lucifugus
ENSCSEG00000005798	sbds	100	81.928	ENSNGAG00000012093	Sbds	99	81.928	Nannospalax_galili
ENSCSEG00000005798	sbds	100	94.779	ENSNBRG00000017027	sbds	100	94.779	Neolamprologus_brichardi
ENSCSEG00000005798	sbds	100	81.526	ENSNLEG00000013288	SBDS	99	81.526	Nomascus_leucogenys
ENSCSEG00000005798	sbds	100	82.731	ENSOPRG00000008721	SBDS	99	82.731	Ochotona_princeps
ENSCSEG00000005798	sbds	100	73.092	ENSODEG00000019253	-	84	73.092	Octodon_degus
ENSCSEG00000005798	sbds	100	63.855	ENSODEG00000001116	-	99	63.855	Octodon_degus
ENSCSEG00000005798	sbds	100	61.446	ENSODEG00000000137	-	84	64.257	Octodon_degus
ENSCSEG00000005798	sbds	100	94.779	ENSONIG00000005874	sbds	100	94.779	Oreochromis_niloticus
ENSCSEG00000005798	sbds	83	80.583	ENSOANG00000007674	-	99	80.583	Ornithorhynchus_anatinus
ENSCSEG00000005798	sbds	100	83.534	ENSOCUG00000003170	SBDS	99	83.534	Oryctolagus_cuniculus
ENSCSEG00000005798	sbds	100	89.558	ENSORLG00000023489	sbds	100	89.558	Oryzias_latipes
ENSCSEG00000005798	sbds	100	89.157	ENSORLG00020019282	sbds	100	89.157	Oryzias_latipes_hni
ENSCSEG00000005798	sbds	100	89.157	ENSORLG00015008005	sbds	100	89.157	Oryzias_latipes_hsok
ENSCSEG00000005798	sbds	100	90.763	ENSOMEG00000022747	sbds	100	90.763	Oryzias_melastigma
ENSCSEG00000005798	sbds	100	69.880	ENSOGAG00000015036	-	99	69.880	Otolemur_garnettii
ENSCSEG00000005798	sbds	100	81.928	ENSOGAG00000009011	-	99	81.928	Otolemur_garnettii
ENSCSEG00000005798	sbds	100	81.526	ENSOARG00000010609	SBDS	99	81.526	Ovis_aries
ENSCSEG00000005798	sbds	100	80.723	ENSPPAG00000043889	-	99	80.723	Pan_paniscus
ENSCSEG00000005798	sbds	100	81.526	ENSPPRG00000002307	SBDS	99	81.526	Panthera_pardus
ENSCSEG00000005798	sbds	100	81.526	ENSPTIG00000021308	SBDS	99	81.526	Panthera_tigris_altaica
ENSCSEG00000005798	sbds	100	81.526	ENSPTRG00000019254	SBDS	99	81.526	Pan_troglodytes
ENSCSEG00000005798	sbds	100	68.273	ENSPTRG00000047744	-	99	68.273	Pan_troglodytes
ENSCSEG00000005798	sbds	100	68.273	ENSPTRG00000050835	-	99	68.273	Pan_troglodytes
ENSCSEG00000005798	sbds	84	81.340	ENSPTRG00000048174	-	93	81.340	Pan_troglodytes
ENSCSEG00000005798	sbds	100	81.526	ENSPANG00000004078	SBDS	99	81.526	Papio_anubis
ENSCSEG00000005798	sbds	100	91.566	ENSPKIG00000006489	sbds	99	91.566	Paramormyrops_kingsleyae
ENSCSEG00000005798	sbds	83	84.058	ENSPSIG00000014603	SBDS	99	84.058	Pelodiscus_sinensis
ENSCSEG00000005798	sbds	100	95.181	ENSPMGG00000004246	sbds	100	95.181	Periophthalmus_magnuspinnatus
ENSCSEG00000005798	sbds	100	81.928	ENSPEMG00000008728	Sbds	99	81.928	Peromyscus_maniculatus_bairdii
ENSCSEG00000005798	sbds	100	83.133	ENSPCIG00000029718	SBDS	99	83.133	Phascolarctos_cinereus
ENSCSEG00000005798	sbds	100	91.165	ENSPFOG00000015837	sbds	100	91.165	Poecilia_formosa
ENSCSEG00000005798	sbds	100	91.566	ENSPLAG00000003641	sbds	100	91.566	Poecilia_latipinna
ENSCSEG00000005798	sbds	100	91.165	ENSPMEG00000019483	sbds	100	91.165	Poecilia_mexicana
ENSCSEG00000005798	sbds	100	91.165	ENSPREG00000018758	sbds	100	91.165	Poecilia_reticulata
ENSCSEG00000005798	sbds	100	81.526	ENSPPYG00000017513	SBDS	99	81.526	Pongo_abelii
ENSCSEG00000005798	sbds	100	81.124	ENSPCOG00000021098	SBDS	99	81.124	Propithecus_coquereli
ENSCSEG00000005798	sbds	100	81.928	ENSPVAG00000009369	SBDS	99	81.928	Pteropus_vampyrus
ENSCSEG00000005798	sbds	100	94.378	ENSPNYG00000022403	sbds	100	94.378	Pundamilia_nyererei
ENSCSEG00000005798	sbds	100	90.361	ENSPNAG00000001120	sbds	99	90.361	Pygocentrus_nattereri
ENSCSEG00000005798	sbds	100	82.731	ENSRNOG00000000888	Sbds	99	82.731	Rattus_norvegicus
ENSCSEG00000005798	sbds	100	81.526	ENSRBIG00000035557	SBDS	99	81.526	Rhinopithecus_bieti
ENSCSEG00000005798	sbds	100	67.871	ENSRROG00000041986	-	99	67.871	Rhinopithecus_roxellana
ENSCSEG00000005798	sbds	100	81.526	ENSRROG00000040842	-	99	81.526	Rhinopithecus_roxellana
ENSCSEG00000005798	sbds	96	44.309	YLR022C	-	96	44.309	Saccharomyces_cerevisiae
ENSCSEG00000005798	sbds	93	79.654	ENSSBOG00000022460	SBDS	99	79.654	Saimiri_boliviensis_boliviensis
ENSCSEG00000005798	sbds	100	71.486	ENSSHAG00000010263	SBDS	99	71.486	Sarcophilus_harrisii
ENSCSEG00000005798	sbds	100	91.566	ENSSFOG00015001108	sbds	99	91.566	Scleropages_formosus
ENSCSEG00000005798	sbds	100	94.779	ENSSMAG00000020506	sbds	100	94.779	Scophthalmus_maximus
ENSCSEG00000005798	sbds	100	94.378	ENSSDUG00000001528	sbds	100	94.378	Seriola_dumerili
ENSCSEG00000005798	sbds	100	93.976	ENSSLDG00000003659	sbds	100	93.976	Seriola_lalandi_dorsalis
ENSCSEG00000005798	sbds	73	87.209	ENSSARG00000001899	-	73	87.209	Sorex_araneus
ENSCSEG00000005798	sbds	61	86.275	ENSSARG00000013132	-	100	86.275	Sorex_araneus
ENSCSEG00000005798	sbds	100	84.337	ENSSPUG00000002699	SBDS	99	84.337	Sphenodon_punctatus
ENSCSEG00000005798	sbds	100	96.787	ENSSPAG00000016419	sbds	100	89.200	Stegastes_partitus
ENSCSEG00000005798	sbds	100	81.526	ENSSSCG00000007732	SBDS	99	81.526	Sus_scrofa
ENSCSEG00000005798	sbds	66	84.756	ENSTGUG00000003426	SBDS	99	84.756	Taeniopygia_guttata
ENSCSEG00000005798	sbds	100	94.779	ENSTRUG00000021443	sbds	100	94.779	Takifugu_rubripes
ENSCSEG00000005798	sbds	100	93.173	ENSTNIG00000019000	sbds	100	93.173	Tetraodon_nigroviridis
ENSCSEG00000005798	sbds	84	69.231	ENSTBEG00000001178	SBDS	100	69.231	Tupaia_belangeri
ENSCSEG00000005798	sbds	100	63.052	ENSTTRG00000003921	SBDS	99	63.052	Tursiops_truncatus
ENSCSEG00000005798	sbds	100	81.526	ENSUAMG00000001326	SBDS	99	81.526	Ursus_americanus
ENSCSEG00000005798	sbds	100	81.526	ENSUMAG00000015353	SBDS	99	81.526	Ursus_maritimus
ENSCSEG00000005798	sbds	100	81.526	ENSVVUG00000016478	SBDS	99	81.526	Vulpes_vulpes
ENSCSEG00000005798	sbds	100	85.542	ENSXETG00000010093	sbds	99	85.542	Xenopus_tropicalis
ENSCSEG00000005798	sbds	100	81.124	ENSXCOG00000010639	sbds	100	81.124	Xiphophorus_couchianus
ENSCSEG00000005798	sbds	100	91.165	ENSXMAG00000006065	sbds	100	91.165	Xiphophorus_maculatus