EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000006243 (Gene tree)
Gene ID: 103391938
Gene Symbol: zgc:101559
Alias: -
Full Name: ras-related protein Rab-33B-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 1395 bases
Position: chr16:8325881-8327275
Accession: 103391938
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000009728	MMR_HSR1	PF01926.23	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000009842	-	705	XM_008328423	ENSCSEP00000009728	234 (aa)	XP_008326645	UPI0004970050

Gene Model

Click here to download ENSCSEG00000006243's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem04140	Autophagy - animal	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000006243's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000006243	zgc:101559	58	37.500	ENSCSEG00000010565	rab23	71	37.838
ENSCSEG00000006243	zgc:101559	66	42.208	ENSCSEG00000017211	rab2a	72	42.208
ENSCSEG00000006243	zgc:101559	69	30.723	ENSCSEG00000014284	dnajc27	60	30.723
ENSCSEG00000006243	zgc:101559	74	38.857	ENSCSEG00000017026	rab25a	82	38.857
ENSCSEG00000006243	zgc:101559	73	41.520	ENSCSEG00000017024	rab5c	75	41.520
ENSCSEG00000006243	zgc:101559	76	39.106	ENSCSEG00000016556	rab6bb	84	39.106
ENSCSEG00000006243	zgc:101559	72	32.143	ENSCSEG00000011820	rras	83	32.143
ENSCSEG00000006243	zgc:101559	75	47.727	ENSCSEG00000007292	rab30	81	47.727
ENSCSEG00000006243	zgc:101559	90	39.048	ENSCSEG00000013400	rab35b	100	39.048
ENSCSEG00000006243	zgc:101559	52	34.400	ENSCSEG00000011160	rab20	50	34.400
ENSCSEG00000006243	zgc:101559	54	44.444	ENSCSEG00000018133	rab34b	50	44.444
ENSCSEG00000006243	zgc:101559	79	35.294	ENSCSEG00000010116	rab9a	84	35.294
ENSCSEG00000006243	zgc:101559	78	40.110	ENSCSEG00000007121	rab11ba	67	40.110
ENSCSEG00000006243	zgc:101559	78	39.891	ENSCSEG00000012149	rab11bb	80	39.891
ENSCSEG00000006243	zgc:101559	85	37.255	ENSCSEG00000004941	rab41	93	37.255
ENSCSEG00000006243	zgc:101559	74	51.832	ENSCSEG00000014479	-	86	49.038
ENSCSEG00000006243	zgc:101559	85	40.394	ENSCSEG00000002358	rab13	91	40.394
ENSCSEG00000006243	zgc:101559	85	36.869	ENSCSEG00000007927	hrasb	97	36.869
ENSCSEG00000006243	zgc:101559	73	46.471	ENSCSEG00000020977	-	80	46.471
ENSCSEG00000006243	zgc:101559	58	33.333	ENSCSEG00000009987	rras2	72	33.333
ENSCSEG00000006243	zgc:101559	63	41.892	ENSCSEG00000010582	rab42a	67	41.892
ENSCSEG00000006243	zgc:101559	78	39.344	ENSCSEG00000007239	-	80	39.344
ENSCSEG00000006243	zgc:101559	80	35.938	ENSCSEG00000016803	rab18b	90	35.938
ENSCSEG00000006243	zgc:101559	70	40.828	ENSCSEG00000002970	RAB7A	73	40.828
ENSCSEG00000006243	zgc:101559	77	61.376	ENSCSEG00000020348	rab33ba	79	61.376
ENSCSEG00000006243	zgc:101559	85	36.765	ENSCSEG00000003122	rab6ba	95	36.765
ENSCSEG00000006243	zgc:101559	71	39.181	ENSCSEG00000005737	kras	87	39.181
ENSCSEG00000006243	zgc:101559	79	30.688	ENSCSEG00000015770	si:cabz01085950.1	91	30.688
ENSCSEG00000006243	zgc:101559	63	47.333	ENSCSEG00000000205	RAB15	70	47.333
ENSCSEG00000006243	zgc:101559	70	40.588	ENSCSEG00000005357	-	79	40.588
ENSCSEG00000006243	zgc:101559	82	40.415	ENSCSEG00000007383	rab11a	85	40.415
ENSCSEG00000006243	zgc:101559	80	36.702	ENSCSEG00000016933	rab12	75	36.702
ENSCSEG00000006243	zgc:101559	74	39.306	ENSCSEG00000011982	rab25b	79	39.306
ENSCSEG00000006243	zgc:101559	65	35.714	ENSCSEG00000016611	rheb	82	35.714
ENSCSEG00000006243	zgc:101559	68	32.121	ENSCSEG00000020208	rasl11b	66	32.121
ENSCSEG00000006243	zgc:101559	76	44.444	ENSCSEG00000010402	-	80	44.444
ENSCSEG00000006243	zgc:101559	69	34.783	ENSCSEG00000018987	si:ch73-116o1.2	86	34.973
ENSCSEG00000006243	zgc:101559	71	38.922	ENSCSEG00000016498	rab14	75	38.922
ENSCSEG00000006243	zgc:101559	74	42.373	ENSCSEG00000019183	si:dkey-34d22.5	77	42.373
ENSCSEG00000006243	zgc:101559	66	46.452	ENSCSEG00000017861	-	72	46.452
ENSCSEG00000006243	zgc:101559	77	46.111	ENSCSEG00000018732	rab1ba	84	46.111
ENSCSEG00000006243	zgc:101559	90	35.814	ENSCSEG00000003768	rab15	85	35.814
ENSCSEG00000006243	zgc:101559	63	36.486	ENSCSEG00000003537	rhebl1	79	36.486
ENSCSEG00000006243	zgc:101559	65	40.385	ENSCSEG00000014467	rab9b	70	40.385
ENSCSEG00000006243	zgc:101559	53	38.211	ENSCSEG00000015746	-	92	38.686
ENSCSEG00000006243	zgc:101559	82	32.870	ENSCSEG00000000717	rasl11a	83	32.870
ENSCSEG00000006243	zgc:101559	81	37.895	ENSCSEG00000011996	rab11al	92	37.895
ENSCSEG00000006243	zgc:101559	78	36.649	ENSCSEG00000019797	rab22a	96	36.649
ENSCSEG00000006243	zgc:101559	63	41.216	ENSCSEG00000011816	rab18a	72	41.216
ENSCSEG00000006243	zgc:101559	87	57.353	ENSCSEG00000016284	rab33a	79	54.348
ENSCSEG00000006243	zgc:101559	70	45.181	ENSCSEG00000019722	RAB39B	77	45.181
ENSCSEG00000006243	zgc:101559	77	46.667	ENSCSEG00000014416	zgc:171927	79	46.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000006243	zgc:101559	100	79.487	ENSAPOG00000007503	zgc:101559	100	79.487	Acanthochromis_polyacanthus
ENSCSEG00000006243	zgc:101559	91	84.906	ENSACIG00000021459	zgc:101559	93	84.906	Amphilophus_citrinellus
ENSCSEG00000006243	zgc:101559	100	79.915	ENSAOCG00000024675	zgc:101559	100	79.915	Amphiprion_ocellaris
ENSCSEG00000006243	zgc:101559	100	79.915	ENSAPEG00000005176	zgc:101559	100	79.915	Amphiprion_percula
ENSCSEG00000006243	zgc:101559	100	81.197	ENSATEG00000007761	zgc:101559	100	81.197	Anabas_testudineus
ENSCSEG00000006243	zgc:101559	98	81.304	ENSACLG00000027006	zgc:101559	97	81.304	Astatotilapia_calliptera
ENSCSEG00000006243	zgc:101559	97	73.246	ENSAMXG00000040460	zgc:101559	91	73.246	Astyanax_mexicanus
ENSCSEG00000006243	zgc:101559	100	79.060	ENSCVAG00000019227	zgc:101559	100	79.060	Cyprinodon_variegatus
ENSCSEG00000006243	zgc:101559	100	73.617	ENSDARG00000003257	zgc:101559	100	73.617	Danio_rerio
ENSCSEG00000006243	zgc:101559	100	76.496	ENSFHEG00000011483	zgc:101559	100	76.496	Fundulus_heteroclitus
ENSCSEG00000006243	zgc:101559	91	76.995	ENSGMOG00000011665	zgc:101559	100	76.995	Gadus_morhua
ENSCSEG00000006243	zgc:101559	100	75.641	ENSGAFG00000021202	zgc:101559	100	75.641	Gambusia_affinis
ENSCSEG00000006243	zgc:101559	93	77.064	ENSGACG00000001725	zgc:101559	94	77.064	Gasterosteus_aculeatus
ENSCSEG00000006243	zgc:101559	100	81.197	ENSHBUG00000007827	zgc:101559	100	81.197	Haplochromis_burtoni
ENSCSEG00000006243	zgc:101559	100	74.153	ENSHCOG00000009133	zgc:101559	100	75.210	Hippocampus_comes
ENSCSEG00000006243	zgc:101559	88	77.073	ENSIPUG00000022394	zgc:101559	88	77.073	Ictalurus_punctatus
ENSCSEG00000006243	zgc:101559	100	76.170	ENSKMAG00000002862	zgc:101559	100	76.170	Kryptolebias_marmoratus
ENSCSEG00000006243	zgc:101559	100	80.769	ENSLBEG00000025798	zgc:101559	100	80.769	Labrus_bergylta
ENSCSEG00000006243	zgc:101559	86	66.337	ENSLACG00000011557	zgc:101559	87	66.337	Latimeria_chalumnae
ENSCSEG00000006243	zgc:101559	89	75.120	ENSLOCG00000005904	zgc:101559	89	75.120	Lepisosteus_oculatus
ENSCSEG00000006243	zgc:101559	100	81.624	ENSMAMG00000017431	zgc:101559	100	81.624	Mastacembelus_armatus
ENSCSEG00000006243	zgc:101559	100	81.197	ENSMZEG00005021778	zgc:101559	100	81.197	Maylandia_zebra
ENSCSEG00000006243	zgc:101559	100	78.205	ENSMMOG00000019779	zgc:101559	100	78.205	Mola_mola
ENSCSEG00000006243	zgc:101559	100	79.915	ENSMALG00000003712	zgc:101559	100	79.915	Monopterus_albus
ENSCSEG00000006243	zgc:101559	100	80.769	ENSNBRG00000002684	zgc:101559	100	80.769	Neolamprologus_brichardi
ENSCSEG00000006243	zgc:101559	100	81.197	ENSONIG00000006715	-	100	81.197	Oreochromis_niloticus
ENSCSEG00000006243	zgc:101559	100	79.487	ENSORLG00000030642	zgc:101559	100	79.487	Oryzias_latipes
ENSCSEG00000006243	zgc:101559	100	79.060	ENSORLG00020012685	zgc:101559	100	79.060	Oryzias_latipes_hni
ENSCSEG00000006243	zgc:101559	100	79.060	ENSORLG00015016047	zgc:101559	100	79.060	Oryzias_latipes_hsok
ENSCSEG00000006243	zgc:101559	100	77.778	ENSOMEG00000013128	zgc:101559	100	77.778	Oryzias_melastigma
ENSCSEG00000006243	zgc:101559	100	70.513	ENSPKIG00000013397	zgc:101559	98	70.513	Paramormyrops_kingsleyae
ENSCSEG00000006243	zgc:101559	100	77.778	ENSPFOG00000009101	-	100	77.778	Poecilia_formosa
ENSCSEG00000006243	zgc:101559	100	77.778	ENSPLAG00000020627	zgc:101559	100	77.778	Poecilia_latipinna
ENSCSEG00000006243	zgc:101559	100	77.778	ENSPMEG00000010152	zgc:101559	100	77.778	Poecilia_mexicana
ENSCSEG00000006243	zgc:101559	100	78.205	ENSPREG00000007017	zgc:101559	100	78.205	Poecilia_reticulata
ENSCSEG00000006243	zgc:101559	100	81.197	ENSPNYG00000012922	zgc:101559	100	81.197	Pundamilia_nyererei
ENSCSEG00000006243	zgc:101559	88	79.024	ENSPNAG00000017856	zgc:101559	88	79.024	Pygocentrus_nattereri
ENSCSEG00000006243	zgc:101559	88	76.442	ENSSFOG00015006175	zgc:101559	89	76.442	Scleropages_formosus
ENSCSEG00000006243	zgc:101559	98	78.355	ENSSMAG00000002229	zgc:101559	98	78.355	Scophthalmus_maximus
ENSCSEG00000006243	zgc:101559	100	82.906	ENSSDUG00000008151	zgc:101559	100	82.906	Seriola_dumerili
ENSCSEG00000006243	zgc:101559	100	82.906	ENSSLDG00000019214	zgc:101559	100	82.906	Seriola_lalandi_dorsalis
ENSCSEG00000006243	zgc:101559	100	80.769	ENSSPAG00000006404	zgc:101559	100	80.769	Stegastes_partitus
ENSCSEG00000006243	zgc:101559	100	75.641	ENSTRUG00000009903	zgc:101559	100	75.641	Takifugu_rubripes
ENSCSEG00000006243	zgc:101559	93	78.802	ENSTNIG00000015000	zgc:101559	100	75.000	Tetraodon_nigroviridis
ENSCSEG00000006243	zgc:101559	100	77.778	ENSXCOG00000018683	zgc:101559	100	77.778	Xiphophorus_couchianus
ENSCSEG00000006243	zgc:101559	100	78.205	ENSXMAG00000011171	zgc:101559	100	78.205	Xiphophorus_maculatus