EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000006509 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zinc finger matrin-type protein 4-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 21209 bases
Position: chr12:8424670-8445878
Accession: 103387308
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000010135	zf-met	PF12874.7	2.5e-21	1	3
ENSCSEP00000010135	zf-met	PF12874.7	2.5e-21	2	3
ENSCSEP00000010135	zf-met	PF12874.7	2.5e-21	3	3
ENSCSEP00000010135	zf-C2H2_jaz	PF12171.8	6.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000010257	-	462	XM_008321885	ENSCSEP00000010135	153 (aa)	XP_008320107	-

Gene Model

Click here to download ENSCSEG00000006509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000006509's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000006509	zgc:171482	93	37.037	ENSCSEG00000016403	znf346	63	37.037
ENSCSEG00000006509	zgc:171482	99	57.059	ENSCSEG00000013707	zmat4a	94	57.059

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000006509	zgc:171482	99	75.309	ENSAPOG00000019970	zgc:171482	100	75.309	Acanthochromis_polyacanthus
ENSCSEG00000006509	zgc:171482	78	93.333	ENSACIG00000021512	zgc:171482	90	93.333	Amphilophus_citrinellus
ENSCSEG00000006509	zgc:171482	78	93.333	ENSAOCG00000000751	zgc:171482	88	93.333	Amphiprion_ocellaris
ENSCSEG00000006509	zgc:171482	78	93.333	ENSAPEG00000014154	zgc:171482	86	93.333	Amphiprion_percula
ENSCSEG00000006509	zgc:171482	100	94.783	ENSATEG00000001371	zgc:171482	100	69.822	Anabas_testudineus
ENSCSEG00000006509	zgc:171482	93	80.282	ENSACLG00000010511	zgc:171482	99	80.282	Astatotilapia_calliptera
ENSCSEG00000006509	zgc:171482	100	91.892	ENSAMXG00000002299	zgc:171482	89	89.744	Astyanax_mexicanus
ENSCSEG00000006509	zgc:171482	100	70.930	ENSCVAG00000013606	zgc:171482	100	70.930	Cyprinodon_variegatus
ENSCSEG00000006509	zgc:171482	99	66.860	ENSDARG00000074415	zgc:171482	99	85.897	Danio_rerio
ENSCSEG00000006509	zgc:171482	73	96.396	ENSELUG00000021817	zgc:171482	89	89.516	Esox_lucius
ENSCSEG00000006509	zgc:171482	99	58.228	ENSELUG00000017517	-	60	84.270	Esox_lucius
ENSCSEG00000006509	zgc:171482	52	56.627	ENSELUG00000021794	-	54	56.627	Esox_lucius
ENSCSEG00000006509	zgc:171482	78	95.000	ENSFHEG00000002233	zgc:171482	100	91.935	Fundulus_heteroclitus
ENSCSEG00000006509	zgc:171482	100	70.659	ENSGMOG00000010508	zgc:171482	100	70.659	Gadus_morhua
ENSCSEG00000006509	zgc:171482	100	94.771	ENSGAFG00000009398	zgc:171482	100	94.771	Gambusia_affinis
ENSCSEG00000006509	zgc:171482	100	93.333	ENSGACG00000007680	zgc:171482	100	93.333	Gasterosteus_aculeatus
ENSCSEG00000006509	zgc:171482	78	93.277	ENSHBUG00000023289	zgc:171482	89	93.277	Haplochromis_burtoni
ENSCSEG00000006509	zgc:171482	78	88.430	ENSHCOG00000018086	zgc:171482	90	88.430	Hippocampus_comes
ENSCSEG00000006509	zgc:171482	82	85.600	ENSIPUG00000000361	zgc:171482	91	85.600	Ictalurus_punctatus
ENSCSEG00000006509	zgc:171482	52	55.422	ENSIPUG00000000356	-	68	49.038	Ictalurus_punctatus
ENSCSEG00000006509	zgc:171482	99	74.847	ENSKMAG00000005077	zgc:171482	86	74.847	Kryptolebias_marmoratus
ENSCSEG00000006509	zgc:171482	78	95.833	ENSLBEG00000023823	zgc:171482	86	95.833	Labrus_bergylta
ENSCSEG00000006509	zgc:171482	100	65.116	ENSLOCG00000008863	zgc:171482	97	65.698	Lepisosteus_oculatus
ENSCSEG00000006509	zgc:171482	78	94.167	ENSMAMG00000001031	zgc:171482	75	94.167	Mastacembelus_armatus
ENSCSEG00000006509	zgc:171482	100	66.082	ENSMZEG00005027721	zgc:171482	100	66.082	Maylandia_zebra
ENSCSEG00000006509	zgc:171482	78	95.000	ENSMMOG00000010523	zgc:171482	92	95.000	Mola_mola
ENSCSEG00000006509	zgc:171482	100	94.118	ENSMALG00000017883	zgc:171482	100	70.286	Monopterus_albus
ENSCSEG00000006509	zgc:171482	73	98.214	ENSNBRG00000021035	zgc:171482	84	98.214	Neolamprologus_brichardi
ENSCSEG00000006509	zgc:171482	99	69.364	ENSONIG00000018365	zgc:171482	98	69.364	Oreochromis_niloticus
ENSCSEG00000006509	zgc:171482	88	85.185	ENSORLG00000007607	zgc:171482	95	85.185	Oryzias_latipes
ENSCSEG00000006509	zgc:171482	100	86.885	ENSORLG00020003563	zgc:171482	100	86.885	Oryzias_latipes_hni
ENSCSEG00000006509	zgc:171482	90	84.058	ENSORLG00015008552	zgc:171482	97	84.058	Oryzias_latipes_hsok
ENSCSEG00000006509	zgc:171482	88	85.185	ENSOMEG00000003526	zgc:171482	95	85.185	Oryzias_melastigma
ENSCSEG00000006509	zgc:171482	75	92.174	ENSPKIG00000015911	-	80	92.174	Paramormyrops_kingsleyae
ENSCSEG00000006509	zgc:171482	72	89.091	ENSPKIG00000016244	zgc:171482	84	83.898	Paramormyrops_kingsleyae
ENSCSEG00000006509	zgc:171482	99	98.214	ENSPMGG00000020230	zgc:171482	100	98.214	Periophthalmus_magnuspinnatus
ENSCSEG00000006509	zgc:171482	99	94.167	ENSPFOG00000001974	zgc:171482	96	94.167	Poecilia_formosa
ENSCSEG00000006509	zgc:171482	99	74.847	ENSPLAG00000003327	zgc:171482	100	74.847	Poecilia_latipinna
ENSCSEG00000006509	zgc:171482	99	91.083	ENSPMEG00000004988	zgc:171482	95	91.083	Poecilia_mexicana
ENSCSEG00000006509	zgc:171482	90	83.333	ENSPREG00000019241	zgc:171482	100	83.333	Poecilia_reticulata
ENSCSEG00000006509	zgc:171482	93	80.282	ENSPNYG00000007773	zgc:171482	99	80.282	Pundamilia_nyererei
ENSCSEG00000006509	zgc:171482	99	91.304	ENSPNAG00000007619	zgc:171482	97	89.744	Pygocentrus_nattereri
ENSCSEG00000006509	zgc:171482	73	89.286	ENSSFOG00015016149	zgc:171482	90	89.286	Scleropages_formosus
ENSCSEG00000006509	zgc:171482	75	87.826	ENSSFOG00015021238	zgc:171482	78	87.826	Scleropages_formosus
ENSCSEG00000006509	zgc:171482	77	95.763	ENSSMAG00000002715	zgc:171482	76	95.763	Scophthalmus_maximus
ENSCSEG00000006509	zgc:171482	78	95.000	ENSSDUG00000008773	zgc:171482	85	95.000	Seriola_dumerili
ENSCSEG00000006509	zgc:171482	78	95.000	ENSSLDG00000019510	zgc:171482	85	95.000	Seriola_lalandi_dorsalis
ENSCSEG00000006509	zgc:171482	78	94.958	ENSSPAG00000013724	zgc:171482	94	94.958	Stegastes_partitus
ENSCSEG00000006509	zgc:171482	78	92.500	ENSTRUG00000005705	zgc:171482	71	92.500	Takifugu_rubripes
ENSCSEG00000006509	zgc:171482	100	54.651	ENSTNIG00000008679	zgc:171482	100	54.651	Tetraodon_nigroviridis
ENSCSEG00000006509	zgc:171482	88	50.000	ENSXETG00000013525	zmat4	89	50.000	Xenopus_tropicalis
ENSCSEG00000006509	zgc:171482	100	87.013	ENSXMAG00000002641	zgc:171482	100	87.013	Xiphophorus_maculatus