EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000006856 (Gene tree)
Gene ID: -
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 17612 bases
Position: chr2:18276520-18294131
Accession: 103376766
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000010793	ResIII	PF04851.15	1.3e-05	1	1
ENSCSEP00000010768	ResIII	PF04851.15	1.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000010897	-	3489	XM_008307278	ENSCSEP00000010768	1162 (aa)	XP_008305500	-
ENSCSET00000010922	-	3318	-	ENSCSEP00000010793	1105 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000006856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000006856's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000006856	si:ch73-63e15.2	83	59.184	ENSCSEG00000011919	sbno1	83	53.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000006856	si:ch73-63e15.2	90	70.194	ENSG00000064932	SBNO2	87	66.346	Homo_sapiens
ENSCSEG00000006856	si:ch73-63e15.2	97	91.304	ENSAPOG00000003185	si:ch73-63e15.2	90	88.754	Acanthochromis_polyacanthus
ENSCSEG00000006856	si:ch73-63e15.2	97	91.757	ENSAOCG00000016581	si:ch73-63e15.2	94	88.725	Amphiprion_ocellaris
ENSCSEG00000006856	si:ch73-63e15.2	97	91.757	ENSAPEG00000008862	si:ch73-63e15.2	79	89.310	Amphiprion_percula
ENSCSEG00000006856	si:ch73-63e15.2	99	87.770	ENSATEG00000023838	si:ch73-63e15.2	93	88.172	Anabas_testudineus
ENSCSEG00000006856	si:ch73-63e15.2	90	73.467	ENSAPLG00000007158	SBNO2	89	70.242	Anas_platyrhynchos
ENSCSEG00000006856	si:ch73-63e15.2	90	69.519	ENSANAG00000026685	SBNO2	88	65.734	Aotus_nancymaae
ENSCSEG00000006856	si:ch73-63e15.2	96	86.347	ENSACLG00000005090	si:ch73-63e15.2	75	83.165	Astatotilapia_calliptera
ENSCSEG00000006856	si:ch73-63e15.2	94	81.015	ENSAMXG00000015881	si:ch73-63e15.2	85	76.857	Astyanax_mexicanus
ENSCSEG00000006856	si:ch73-63e15.2	95	81.273	ENSAMXG00000018868	sbno2a	95	77.349	Astyanax_mexicanus
ENSCSEG00000006856	si:ch73-63e15.2	96	67.482	ENSBTAG00000020780	SBNO2	87	66.988	Bos_taurus
ENSCSEG00000006856	si:ch73-63e15.2	90	70.962	ENSCAFG00000019543	SBNO2	83	67.247	Canis_familiaris
ENSCSEG00000006856	si:ch73-63e15.2	90	70.962	ENSCAFG00020017115	SBNO2	88	67.247	Canis_lupus_dingo
ENSCSEG00000006856	si:ch73-63e15.2	96	67.391	ENSCHIG00000026127	SBNO2	85	66.929	Capra_hircus
ENSCSEG00000006856	si:ch73-63e15.2	89	68.574	ENSCAPG00000005731	SBNO2	93	65.022	Cavia_aperea
ENSCSEG00000006856	si:ch73-63e15.2	90	68.431	ENSCPOG00000007477	SBNO2	86	64.645	Cavia_porcellus
ENSCSEG00000006856	si:ch73-63e15.2	90	69.519	ENSCCAG00000037518	SBNO2	88	65.909	Cebus_capucinus
ENSCSEG00000006856	si:ch73-63e15.2	90	70.221	ENSCATG00000037046	SBNO2	87	66.346	Cercocebus_atys
ENSCSEG00000006856	si:ch73-63e15.2	90	70.174	ENSCLAG00000010178	SBNO2	99	66.202	Chinchilla_lanigera
ENSCSEG00000006856	si:ch73-63e15.2	90	70.125	ENSCSAG00000012317	SBNO2	84	66.230	Chlorocebus_sabaeus
ENSCSEG00000006856	si:ch73-63e15.2	94	68.348	ENSCPBG00000008920	SBNO2	92	68.070	Chrysemys_picta_bellii
ENSCSEG00000006856	si:ch73-63e15.2	85	69.960	ENSCANG00000036745	SBNO2	95	65.936	Colobus_angolensis_palliatus
ENSCSEG00000006856	si:ch73-63e15.2	90	67.823	ENSCGRG00001023960	Sbno2	85	65.100	Cricetulus_griseus_chok1gshd
ENSCSEG00000006856	si:ch73-63e15.2	90	69.201	ENSCGRG00000011984	Sbno2	85	66.348	Cricetulus_griseus_crigri
ENSCSEG00000006856	si:ch73-63e15.2	97	86.551	ENSCVAG00000005663	si:ch73-63e15.2	79	82.995	Cyprinodon_variegatus
ENSCSEG00000006856	si:ch73-63e15.2	94	80.718	ENSDARG00000098801	sbno2a	86	75.085	Danio_rerio
ENSCSEG00000006856	si:ch73-63e15.2	94	80.000	ENSDARG00000016188	SBNO2	84	75.531	Danio_rerio
ENSCSEG00000006856	si:ch73-63e15.2	90	70.452	ENSDORG00000002916	Sbno2	84	67.217	Dipodomys_ordii
ENSCSEG00000006856	si:ch73-63e15.2	90	70.837	ENSEASG00005021621	SBNO2	88	67.714	Equus_asinus_asinus
ENSCSEG00000006856	si:ch73-63e15.2	90	70.934	ENSECAG00000011827	SBNO2	88	67.627	Equus_caballus
ENSCSEG00000006856	si:ch73-63e15.2	94	86.585	ENSELUG00000020457	si:ch73-63e15.2	80	82.494	Esox_lucius
ENSCSEG00000006856	si:ch73-63e15.2	91	73.092	ENSFALG00000013988	SBNO2	85	69.632	Ficedula_albicollis
ENSCSEG00000006856	si:ch73-63e15.2	88	68.276	ENSFDAG00000015186	SBNO2	85	64.769	Fukomys_damarensis
ENSCSEG00000006856	si:ch73-63e15.2	97	87.809	ENSFHEG00000022262	si:ch73-63e15.2	77	85.034	Fundulus_heteroclitus
ENSCSEG00000006856	si:ch73-63e15.2	92	87.066	ENSGMOG00000007542	si:ch73-63e15.2	96	83.422	Gadus_morhua
ENSCSEG00000006856	si:ch73-63e15.2	91	73.321	ENSGALG00000037522	SBNO2	85	69.829	Gallus_gallus
ENSCSEG00000006856	si:ch73-63e15.2	96	86.801	ENSGAFG00000004860	si:ch73-63e15.2	91	85.418	Gambusia_affinis
ENSCSEG00000006856	si:ch73-63e15.2	92	90.255	ENSGACG00000013190	si:ch73-63e15.2	95	86.075	Gasterosteus_aculeatus
ENSCSEG00000006856	si:ch73-63e15.2	98	70.416	ENSGAGG00000008348	SBNO2	89	68.905	Gopherus_agassizii
ENSCSEG00000006856	si:ch73-63e15.2	96	86.347	ENSHBUG00000010742	si:ch73-63e15.2	79	83.151	Haplochromis_burtoni
ENSCSEG00000006856	si:ch73-63e15.2	90	70.135	ENSHGLG00000008739	SBNO2	84	66.318	Heterocephalus_glaber_female
ENSCSEG00000006856	si:ch73-63e15.2	90	70.058	ENSHGLG00100005269	SBNO2	99	66.144	Heterocephalus_glaber_male
ENSCSEG00000006856	si:ch73-63e15.2	97	88.626	ENSHCOG00000000884	si:ch73-63e15.2	88	87.091	Hippocampus_comes
ENSCSEG00000006856	si:ch73-63e15.2	92	81.503	ENSIPUG00000000537	si:ch73-63e15.2	84	77.178	Ictalurus_punctatus
ENSCSEG00000006856	si:ch73-63e15.2	95	81.776	ENSIPUG00000019672	sbno2	93	79.171	Ictalurus_punctatus
ENSCSEG00000006856	si:ch73-63e15.2	90	70.213	ENSSTOG00000025832	SBNO2	84	66.405	Ictidomys_tridecemlineatus
ENSCSEG00000006856	si:ch73-63e15.2	90	67.115	ENSJJAG00000017397	Sbno2	85	62.651	Jaculus_jaculus
ENSCSEG00000006856	si:ch73-63e15.2	99	85.195	ENSKMAG00000005541	si:ch73-63e15.2	79	83.263	Kryptolebias_marmoratus
ENSCSEG00000006856	si:ch73-63e15.2	97	89.755	ENSLBEG00000025016	si:ch73-63e15.2	95	89.020	Labrus_bergylta
ENSCSEG00000006856	si:ch73-63e15.2	50	77.169	ENSLBEG00000005937	-	100	77.321	Labrus_bergylta
ENSCSEG00000006856	si:ch73-63e15.2	52	64.126	ENSLACG00000012598	SBNO2	98	67.219	Latimeria_chalumnae
ENSCSEG00000006856	si:ch73-63e15.2	95	82.537	ENSLOCG00000004643	si:ch73-63e15.2	85	81.645	Lepisosteus_oculatus
ENSCSEG00000006856	si:ch73-63e15.2	90	65.898	ENSLAFG00000008824	SBNO2	89	63.009	Loxodonta_africana
ENSCSEG00000006856	si:ch73-63e15.2	90	69.482	ENSMFAG00000040030	SBNO2	89	64.829	Macaca_fascicularis
ENSCSEG00000006856	si:ch73-63e15.2	90	70.125	ENSMMUG00000010886	SBNO2	88	64.834	Macaca_mulatta
ENSCSEG00000006856	si:ch73-63e15.2	90	70.221	ENSMNEG00000039927	SBNO2	87	66.346	Macaca_nemestrina
ENSCSEG00000006856	si:ch73-63e15.2	82	70.768	ENSMLEG00000038556	SBNO2	90	66.477	Mandrillus_leucophaeus
ENSCSEG00000006856	si:ch73-63e15.2	98	90.118	ENSMAMG00000018758	si:ch73-63e15.2	77	86.616	Mastacembelus_armatus
ENSCSEG00000006856	si:ch73-63e15.2	96	86.347	ENSMZEG00005010682	si:ch73-63e15.2	75	83.151	Maylandia_zebra
ENSCSEG00000006856	si:ch73-63e15.2	90	73.467	ENSMGAG00000003801	SBNO2	89	69.644	Meleagris_gallopavo
ENSCSEG00000006856	si:ch73-63e15.2	90	69.431	ENSMAUG00000008034	Sbno2	85	66.928	Mesocricetus_auratus
ENSCSEG00000006856	si:ch73-63e15.2	90	69.875	ENSMICG00000013071	SBNO2	87	66.345	Microcebus_murinus
ENSCSEG00000006856	si:ch73-63e15.2	90	69.691	ENSMOCG00000010504	Sbno2	85	66.521	Microtus_ochrogaster
ENSCSEG00000006856	si:ch73-63e15.2	91	72.919	ENSMODG00000005382	SBNO2	82	68.918	Monodelphis_domestica
ENSCSEG00000006856	si:ch73-63e15.2	77	86.429	ENSMALG00000021831	si:ch73-63e15.2	96	86.429	Monopterus_albus
ENSCSEG00000006856	si:ch73-63e15.2	93	65.677	ENSMUSG00000035673	Sbno2	93	66.144	Mus_musculus
ENSCSEG00000006856	si:ch73-63e15.2	90	68.720	MGP_PahariEiJ_G0030976	Sbno2	84	66.232	Mus_pahari
ENSCSEG00000006856	si:ch73-63e15.2	90	68.720	MGP_SPRETEiJ_G0016381	Sbno2	90	66.232	Mus_spretus
ENSCSEG00000006856	si:ch73-63e15.2	76	72.582	ENSMPUG00000008747	SBNO2	91	68.117	Mustela_putorius_furo
ENSCSEG00000006856	si:ch73-63e15.2	90	69.327	ENSNGAG00000004308	Sbno2	86	65.505	Nannospalax_galili
ENSCSEG00000006856	si:ch73-63e15.2	95	85.622	ENSNBRG00000022968	si:ch73-63e15.2	93	87.981	Neolamprologus_brichardi
ENSCSEG00000006856	si:ch73-63e15.2	86	70.686	ENSNLEG00000001305	SBNO2	86	70.686	Nomascus_leucogenys
ENSCSEG00000006856	si:ch73-63e15.2	82	65.074	ENSMEUG00000013511	-	78	65.074	Notamacropus_eugenii
ENSCSEG00000006856	si:ch73-63e15.2	93	66.490	ENSOPRG00000017238	SBNO2	94	66.872	Ochotona_princeps
ENSCSEG00000006856	si:ch73-63e15.2	90	68.882	ENSODEG00000011822	SBNO2	85	64.594	Octodon_degus
ENSCSEG00000006856	si:ch73-63e15.2	96	86.993	ENSONIG00000002490	si:ch73-63e15.2	94	83.529	Oreochromis_niloticus
ENSCSEG00000006856	si:ch73-63e15.2	96	85.182	ENSORLG00000000913	si:ch73-63e15.2	80	82.215	Oryzias_latipes
ENSCSEG00000006856	si:ch73-63e15.2	96	85.091	ENSORLG00020010978	si:ch73-63e15.2	80	82.131	Oryzias_latipes_hni
ENSCSEG00000006856	si:ch73-63e15.2	98	85.112	ENSORLG00015000202	si:ch73-63e15.2	80	81.910	Oryzias_latipes_hsok
ENSCSEG00000006856	si:ch73-63e15.2	98	83.690	ENSOMEG00000000359	si:ch73-63e15.2	75	81.454	Oryzias_melastigma
ENSCSEG00000006856	si:ch73-63e15.2	99	61.475	ENSOARG00000011130	SBNO2	86	64.049	Ovis_aries
ENSCSEG00000006856	si:ch73-63e15.2	90	68.952	ENSPPAG00000032482	SBNO2	89	65.338	Pan_paniscus
ENSCSEG00000006856	si:ch73-63e15.2	90	70.000	ENSPTRG00000010185	SBNO2	87	66.259	Pan_troglodytes
ENSCSEG00000006856	si:ch73-63e15.2	93	65.921	ENSPANG00000009658	SBNO2	87	65.921	Papio_anubis
ENSCSEG00000006856	si:ch73-63e15.2	90	86.220	ENSPKIG00000024201	si:ch73-63e15.2	84	80.589	Paramormyrops_kingsleyae
ENSCSEG00000006856	si:ch73-63e15.2	88	77.168	ENSPKIG00000009707	-	88	73.603	Paramormyrops_kingsleyae
ENSCSEG00000006856	si:ch73-63e15.2	75	73.943	ENSPSIG00000002852	SBNO2	99	69.666	Pelodiscus_sinensis
ENSCSEG00000006856	si:ch73-63e15.2	98	86.863	ENSPMGG00000014375	si:ch73-63e15.2	91	86.949	Periophthalmus_magnuspinnatus
ENSCSEG00000006856	si:ch73-63e15.2	90	67.500	ENSPEMG00000024122	Sbno2	84	64.499	Peromyscus_maniculatus_bairdii
ENSCSEG00000006856	si:ch73-63e15.2	91	72.632	ENSPCIG00000011264	SBNO2	83	68.480	Phascolarctos_cinereus
ENSCSEG00000006856	si:ch73-63e15.2	96	88.440	ENSPFOG00000004096	si:ch73-63e15.2	99	85.928	Poecilia_formosa
ENSCSEG00000006856	si:ch73-63e15.2	96	88.349	ENSPLAG00000014653	si:ch73-63e15.2	78	85.264	Poecilia_latipinna
ENSCSEG00000006856	si:ch73-63e15.2	96	88.349	ENSPMEG00000002129	si:ch73-63e15.2	90	86.501	Poecilia_mexicana
ENSCSEG00000006856	si:ch73-63e15.2	96	88.073	ENSPREG00000006755	si:ch73-63e15.2	75	84.357	Poecilia_reticulata
ENSCSEG00000006856	si:ch73-63e15.2	90	67.695	ENSPCAG00000012256	SBNO2	77	67.695	Procavia_capensis
ENSCSEG00000006856	si:ch73-63e15.2	93	60.105	ENSPCOG00000015216	SBNO2	87	60.402	Propithecus_coquereli
ENSCSEG00000006856	si:ch73-63e15.2	96	86.347	ENSPNYG00000019926	si:ch73-63e15.2	79	83.151	Pundamilia_nyererei
ENSCSEG00000006856	si:ch73-63e15.2	94	82.214	ENSPNAG00000020260	si:ch73-63e15.2	86	76.865	Pygocentrus_nattereri
ENSCSEG00000006856	si:ch73-63e15.2	94	81.273	ENSPNAG00000026609	sbno2a	84	78.158	Pygocentrus_nattereri
ENSCSEG00000006856	si:ch73-63e15.2	90	69.297	ENSRNOG00000013987	Sbno2	89	66.696	Rattus_norvegicus
ENSCSEG00000006856	si:ch73-63e15.2	82	70.242	ENSRBIG00000009740	SBNO2	86	65.553	Rhinopithecus_bieti
ENSCSEG00000006856	si:ch73-63e15.2	78	73.343	ENSRROG00000044671	SBNO2	85	67.488	Rhinopithecus_roxellana
ENSCSEG00000006856	si:ch73-63e15.2	90	69.423	ENSSBOG00000023562	SBNO2	88	65.909	Saimiri_boliviensis_boliviensis
ENSCSEG00000006856	si:ch73-63e15.2	89	73.581	ENSSHAG00000010241	SBNO2	97	69.096	Sarcophilus_harrisii
ENSCSEG00000006856	si:ch73-63e15.2	93	82.824	ENSSFOG00015005861	si:ch73-63e15.2	95	77.296	Scleropages_formosus
ENSCSEG00000006856	si:ch73-63e15.2	97	92.022	ENSSMAG00000012489	si:ch73-63e15.2	77	89.553	Scophthalmus_maximus
ENSCSEG00000006856	si:ch73-63e15.2	97	91.568	ENSSDUG00000003527	si:ch73-63e15.2	76	89.217	Seriola_dumerili
ENSCSEG00000006856	si:ch73-63e15.2	97	91.478	ENSSLDG00000004623	si:ch73-63e15.2	76	89.301	Seriola_lalandi_dorsalis
ENSCSEG00000006856	si:ch73-63e15.2	98	90.000	ENSSPAG00000017717	si:ch73-63e15.2	78	90.000	Stegastes_partitus
ENSCSEG00000006856	si:ch73-63e15.2	90	70.192	ENSSSCG00000030042	SBNO2	88	66.667	Sus_scrofa
ENSCSEG00000006856	si:ch73-63e15.2	89	89.645	ENSTRUG00000018193	si:ch73-63e15.2	86	87.397	Takifugu_rubripes
ENSCSEG00000006856	si:ch73-63e15.2	85	68.677	ENSUAMG00000006568	SBNO2	93	69.017	Ursus_americanus
ENSCSEG00000006856	si:ch73-63e15.2	90	70.962	ENSVVUG00000022823	SBNO2	82	67.160	Vulpes_vulpes
ENSCSEG00000006856	si:ch73-63e15.2	91	71.457	ENSXETG00000021579	sbno2	91	71.457	Xenopus_tropicalis
ENSCSEG00000006856	si:ch73-63e15.2	82	89.747	ENSXCOG00000009209	si:ch73-63e15.2	86	90.544	Xiphophorus_couchianus
ENSCSEG00000006856	si:ch73-63e15.2	96	88.349	ENSXMAG00000012091	si:ch73-63e15.2	87	88.326	Xiphophorus_maculatus