EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000007107 (Gene tree)
Gene ID: 103376763
Gene Symbol: polr2eb
Alias: fk97g10|polr2e|wu:fk97g10|zgc:101098
Full Name: RNA polymerase II subunit E
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 2289 bases
Position: chr2:18327352-18329640
Accession: 103376763
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000011083	RNA_pol_Rpb5_N	PF03871.14	1.2e-35	1	1
ENSCSEP00000011072	RNA_pol_Rpb5_N	PF03871.14	1.9e-35	1	1
ENSCSEP00000011072	RNA_pol_Rpb5_C	PF01191.19	9.7e-35	1	1
ENSCSEP00000011083	RNA_pol_Rpb5_C	PF01191.19	2.1e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000011216	-	552	XM_008307270	ENSCSEP00000011083	183 (aa)	XP_008305492	-
ENSCSET00000011205	-	693	-	ENSCSEP00000011072	229 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000007107's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03020	RNA polymerase	KEGG
csem04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000007107's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000007107	polr2eb	100	92.896	ENSG00000099817	POLR2E	100	94.286	Homo_sapiens
ENSCSEG00000007107	polr2eb	100	97.814	ENSAPOG00000002935	polr2eb	100	98.095	Acanthochromis_polyacanthus
ENSCSEG00000007107	polr2eb	92	94.762	ENSAMEG00000003159	POLR2E	100	94.762	Ailuropoda_melanoleuca
ENSCSEG00000007107	polr2eb	100	98.361	ENSACIG00000024371	polr2eb	100	98.361	Amphilophus_citrinellus
ENSCSEG00000007107	polr2eb	100	97.814	ENSAOCG00000018166	polr2eb	100	98.095	Amphiprion_ocellaris
ENSCSEG00000007107	polr2eb	92	98.095	ENSAPEG00000009000	polr2eb	100	98.095	Amphiprion_percula
ENSCSEG00000007107	polr2eb	100	97.814	ENSATEG00000023760	polr2eb	100	98.095	Anabas_testudineus
ENSCSEG00000007107	polr2eb	100	93.443	ENSANAG00000038488	POLR2E	100	94.762	Aotus_nancymaae
ENSCSEG00000007107	polr2eb	100	98.361	ENSACLG00000005254	polr2eb	100	98.571	Astatotilapia_calliptera
ENSCSEG00000007107	polr2eb	92	97.619	ENSAMXG00000018915	POLR2E	100	97.619	Astyanax_mexicanus
ENSCSEG00000007107	polr2eb	92	94.762	ENSBTAG00000020776	POLR2E	100	94.762	Bos_taurus
ENSCSEG00000007107	polr2eb	91	79.808	WBGene00019246	rpb-5	99	79.808	Caenorhabditis_elegans
ENSCSEG00000007107	polr2eb	61	90.000	ENSCJAG00000007666	-	77	90.000	Callithrix_jacchus
ENSCSEG00000007107	polr2eb	92	91.905	ENSCAFG00000019546	POLR2E	100	91.905	Canis_familiaris
ENSCSEG00000007107	polr2eb	92	94.762	ENSCAFG00020017111	POLR2E	100	94.762	Canis_lupus_dingo
ENSCSEG00000007107	polr2eb	92	94.762	ENSCHIG00000014151	POLR2E	100	94.762	Capra_hircus
ENSCSEG00000007107	polr2eb	100	73.770	ENSTSYG00000026377	POLR2E	100	77.674	Carlito_syrichta
ENSCSEG00000007107	polr2eb	84	94.792	ENSCAPG00000010843	POLR2E	93	94.792	Cavia_aperea
ENSCSEG00000007107	polr2eb	92	94.762	ENSCPOG00000001542	POLR2E	100	94.762	Cavia_porcellus
ENSCSEG00000007107	polr2eb	100	93.443	ENSCCAG00000025658	POLR2E	100	94.762	Cebus_capucinus
ENSCSEG00000007107	polr2eb	100	93.443	ENSCATG00000008926	POLR2E	100	94.762	Cercocebus_atys
ENSCSEG00000007107	polr2eb	90	72.683	ENSCLAG00000009238	-	100	72.683	Chinchilla_lanigera
ENSCSEG00000007107	polr2eb	92	94.286	ENSCLAG00000014874	-	100	94.286	Chinchilla_lanigera
ENSCSEG00000007107	polr2eb	92	94.762	ENSCSAG00000012336	POLR2E	100	94.762	Chlorocebus_sabaeus
ENSCSEG00000007107	polr2eb	92	95.238	ENSCPBG00000009702	POLR2E	100	95.238	Chrysemys_picta_bellii
ENSCSEG00000007107	polr2eb	92	86.190	ENSCING00000024933	-	99	86.190	Ciona_intestinalis
ENSCSEG00000007107	polr2eb	100	93.443	ENSCANG00000025560	POLR2E	100	94.762	Colobus_angolensis_palliatus
ENSCSEG00000007107	polr2eb	92	94.762	ENSCGRG00001022927	Polr2e	100	94.762	Cricetulus_griseus_chok1gshd
ENSCSEG00000007107	polr2eb	92	88.372	ENSCGRG00000016441	Polr2e	100	88.372	Cricetulus_griseus_crigri
ENSCSEG00000007107	polr2eb	100	97.814	ENSCVAG00000019940	polr2eb	100	98.095	Cyprinodon_variegatus
ENSCSEG00000007107	polr2eb	92	97.143	ENSDARG00000026183	polr2eb	100	97.143	Danio_rerio
ENSCSEG00000007107	polr2eb	83	94.211	ENSDNOG00000044994	POLR2E	84	94.211	Dasypus_novemcinctus
ENSCSEG00000007107	polr2eb	92	94.762	ENSDORG00000001154	Polr2e	100	94.762	Dipodomys_ordii
ENSCSEG00000007107	polr2eb	91	85.646	FBgn0033571	Rpb5	99	85.646	Drosophila_melanogaster
ENSCSEG00000007107	polr2eb	69	91.720	ENSEBUG00000010159	-	76	91.720	Eptatretus_burgeri
ENSCSEG00000007107	polr2eb	63	88.276	ENSEASG00005021615	POLR2E	69	80.240	Equus_asinus_asinus
ENSCSEG00000007107	polr2eb	100	93.989	ENSECAG00000011124	POLR2E	100	93.989	Equus_caballus
ENSCSEG00000007107	polr2eb	100	95.628	ENSELUG00000005815	POLR2E	100	96.190	Esox_lucius
ENSCSEG00000007107	polr2eb	100	94.536	ENSELUG00000020646	polr2e	100	95.238	Esox_lucius
ENSCSEG00000007107	polr2eb	99	93.956	ENSFCAG00000007318	POLR2E	100	94.286	Felis_catus
ENSCSEG00000007107	polr2eb	84	95.312	ENSFALG00000013986	POLR2E	99	95.312	Ficedula_albicollis
ENSCSEG00000007107	polr2eb	92	94.762	ENSFDAG00000014539	POLR2E	100	94.762	Fukomys_damarensis
ENSCSEG00000007107	polr2eb	100	97.814	ENSFHEG00000022398	polr2eb	100	98.095	Fundulus_heteroclitus
ENSCSEG00000007107	polr2eb	92	96.667	ENSGMOG00000007615	polr2eb	100	96.667	Gadus_morhua
ENSCSEG00000007107	polr2eb	92	95.238	ENSGALG00000002591	POLR2E	100	95.238	Gallus_gallus
ENSCSEG00000007107	polr2eb	100	98.361	ENSGAFG00000005087	polr2eb	100	98.571	Gambusia_affinis
ENSCSEG00000007107	polr2eb	92	96.667	ENSGACG00000013247	polr2eb	100	96.667	Gasterosteus_aculeatus
ENSCSEG00000007107	polr2eb	92	95.238	ENSGAGG00000008356	POLR2E	100	95.238	Gopherus_agassizii
ENSCSEG00000007107	polr2eb	100	93.443	ENSGGOG00000011267	POLR2E	100	94.762	Gorilla_gorilla
ENSCSEG00000007107	polr2eb	62	94.366	ENSHBUG00000011099	polr2eb	100	94.366	Haplochromis_burtoni
ENSCSEG00000007107	polr2eb	92	95.714	ENSHGLG00000013330	POLR2E	100	95.714	Heterocephalus_glaber_female
ENSCSEG00000007107	polr2eb	92	95.714	ENSHGLG00100011014	POLR2E	100	95.714	Heterocephalus_glaber_male
ENSCSEG00000007107	polr2eb	100	96.721	ENSHCOG00000000906	polr2eb	100	97.143	Hippocampus_comes
ENSCSEG00000007107	polr2eb	50	85.263	ENSHCOG00000012099	-	88	94.643	Hippocampus_comes
ENSCSEG00000007107	polr2eb	92	98.095	ENSIPUG00000019801	polr2e	100	98.095	Ictalurus_punctatus
ENSCSEG00000007107	polr2eb	92	94.762	ENSSTOG00000002853	POLR2E	100	94.762	Ictidomys_tridecemlineatus
ENSCSEG00000007107	polr2eb	92	94.762	ENSJJAG00000016595	-	100	94.762	Jaculus_jaculus
ENSCSEG00000007107	polr2eb	100	87.978	ENSJJAG00000003145	-	100	87.978	Jaculus_jaculus
ENSCSEG00000007107	polr2eb	70	77.019	ENSJJAG00000015812	-	100	77.019	Jaculus_jaculus
ENSCSEG00000007107	polr2eb	92	98.095	ENSKMAG00000005954	polr2eb	100	98.095	Kryptolebias_marmoratus
ENSCSEG00000007107	polr2eb	100	97.814	ENSLBEG00000024802	polr2eb	100	98.095	Labrus_bergylta
ENSCSEG00000007107	polr2eb	92	95.714	ENSLACG00000013686	POLR2E	100	95.714	Latimeria_chalumnae
ENSCSEG00000007107	polr2eb	71	98.148	ENSLOCG00000004599	POLR2E	100	98.148	Lepisosteus_oculatus
ENSCSEG00000007107	polr2eb	92	75.943	ENSLAFG00000025587	POLR2E	100	75.943	Loxodonta_africana
ENSCSEG00000007107	polr2eb	100	93.443	ENSMFAG00000002884	POLR2E	100	94.762	Macaca_fascicularis
ENSCSEG00000007107	polr2eb	100	93.443	ENSMMUG00000013927	POLR2E	100	94.762	Macaca_mulatta
ENSCSEG00000007107	polr2eb	100	93.443	ENSMNEG00000034046	-	100	94.762	Macaca_nemestrina
ENSCSEG00000007107	polr2eb	92	63.507	ENSMNEG00000033452	-	100	63.507	Macaca_nemestrina
ENSCSEG00000007107	polr2eb	91	75.301	ENSMLEG00000012405	POLR2E	94	78.756	Mandrillus_leucophaeus
ENSCSEG00000007107	polr2eb	100	97.814	ENSMAMG00000018703	polr2eb	100	98.095	Mastacembelus_armatus
ENSCSEG00000007107	polr2eb	100	98.361	ENSMZEG00005010796	polr2eb	100	98.361	Maylandia_zebra
ENSCSEG00000007107	polr2eb	92	94.313	ENSMGAG00000003769	POLR2E	100	94.313	Meleagris_gallopavo
ENSCSEG00000007107	polr2eb	92	65.238	ENSMAUG00000011003	-	100	65.238	Mesocricetus_auratus
ENSCSEG00000007107	polr2eb	84	94.301	ENSMAUG00000010125	-	100	94.764	Mesocricetus_auratus
ENSCSEG00000007107	polr2eb	100	93.989	ENSMICG00000013063	POLR2E	100	94.762	Microcebus_murinus
ENSCSEG00000007107	polr2eb	92	94.762	ENSMOCG00000013414	Polr2e	100	94.762	Microtus_ochrogaster
ENSCSEG00000007107	polr2eb	100	97.268	ENSMMOG00000001161	polr2eb	100	97.268	Mola_mola
ENSCSEG00000007107	polr2eb	83	89.005	ENSMMOG00000001167	polr2eb	88	89.005	Mola_mola
ENSCSEG00000007107	polr2eb	92	95.238	ENSMODG00000005494	POLR2E	100	95.238	Monodelphis_domestica
ENSCSEG00000007107	polr2eb	92	98.095	ENSMALG00000021888	polr2eb	100	98.095	Monopterus_albus
ENSCSEG00000007107	polr2eb	92	94.762	MGP_CAROLIEiJ_G0015561	Polr2e	100	94.762	Mus_caroli
ENSCSEG00000007107	polr2eb	92	94.762	ENSMUSG00000004667	Polr2e	100	94.762	Mus_musculus
ENSCSEG00000007107	polr2eb	92	94.762	MGP_PahariEiJ_G0030974	Polr2e	100	94.762	Mus_pahari
ENSCSEG00000007107	polr2eb	92	94.762	MGP_SPRETEiJ_G0016379	Polr2e	100	94.762	Mus_spretus
ENSCSEG00000007107	polr2eb	92	93.810	ENSMPUG00000008953	POLR2E	100	93.810	Mustela_putorius_furo
ENSCSEG00000007107	polr2eb	92	94.762	ENSMLUG00000013193	POLR2E	100	94.762	Myotis_lucifugus
ENSCSEG00000007107	polr2eb	60	89.855	ENSMLUG00000006376	-	100	79.012	Myotis_lucifugus
ENSCSEG00000007107	polr2eb	78	72.067	ENSNGAG00000017344	-	96	72.067	Nannospalax_galili
ENSCSEG00000007107	polr2eb	92	94.762	ENSNGAG00000001147	Polr2e	100	94.762	Nannospalax_galili
ENSCSEG00000007107	polr2eb	100	98.361	ENSNBRG00000022772	polr2eb	100	98.361	Neolamprologus_brichardi
ENSCSEG00000007107	polr2eb	100	89.674	ENSNLEG00000001207	-	100	90.995	Nomascus_leucogenys
ENSCSEG00000007107	polr2eb	100	67.839	ENSNLEG00000031364	-	100	72.381	Nomascus_leucogenys
ENSCSEG00000007107	polr2eb	92	83.333	ENSOPRG00000008331	POLR2E	100	83.333	Ochotona_princeps
ENSCSEG00000007107	polr2eb	92	94.762	ENSODEG00000013230	-	100	94.762	Octodon_degus
ENSCSEG00000007107	polr2eb	100	69.792	ENSODEG00000011490	-	100	69.792	Octodon_degus
ENSCSEG00000007107	polr2eb	81	83.871	ENSODEG00000007985	-	100	83.871	Octodon_degus
ENSCSEG00000007107	polr2eb	92	98.095	ENSONIG00000002519	polr2eb	100	98.095	Oreochromis_niloticus
ENSCSEG00000007107	polr2eb	100	98.361	ENSORLG00000015346	polr2eb	100	98.571	Oryzias_latipes
ENSCSEG00000007107	polr2eb	100	98.361	ENSORLG00020020700	polr2e	100	98.571	Oryzias_latipes_hni
ENSCSEG00000007107	polr2eb	100	98.361	ENSORLG00015016842	polr2e	100	98.571	Oryzias_latipes_hsok
ENSCSEG00000007107	polr2eb	92	98.095	ENSOMEG00000002709	polr2eb	100	98.095	Oryzias_melastigma
ENSCSEG00000007107	polr2eb	92	94.762	ENSOGAG00000012311	POLR2E	100	94.762	Otolemur_garnettii
ENSCSEG00000007107	polr2eb	92	94.762	ENSOARG00000010994	POLR2E	100	94.762	Ovis_aries
ENSCSEG00000007107	polr2eb	90	93.293	ENSPPAG00000003145	POLR2E	100	94.764	Pan_paniscus
ENSCSEG00000007107	polr2eb	99	93.956	ENSPPRG00000000777	POLR2E	100	94.286	Panthera_pardus
ENSCSEG00000007107	polr2eb	90	84.848	ENSPTIG00000012237	POLR2E	98	90.132	Panthera_tigris_altaica
ENSCSEG00000007107	polr2eb	100	93.443	ENSPTRG00000010183	POLR2E	100	94.762	Pan_troglodytes
ENSCSEG00000007107	polr2eb	100	93.443	ENSPANG00000018011	POLR2E	100	94.762	Papio_anubis
ENSCSEG00000007107	polr2eb	100	96.175	ENSPKIG00000009607	POLR2E	100	96.667	Paramormyrops_kingsleyae
ENSCSEG00000007107	polr2eb	100	96.175	ENSPKIG00000024123	POLR2E	100	96.667	Paramormyrops_kingsleyae
ENSCSEG00000007107	polr2eb	90	91.707	ENSPSIG00000002870	POLR2E	99	91.707	Pelodiscus_sinensis
ENSCSEG00000007107	polr2eb	100	97.814	ENSPMGG00000014354	polr2eb	100	97.814	Periophthalmus_magnuspinnatus
ENSCSEG00000007107	polr2eb	92	94.762	ENSPEMG00000023261	Polr2e	100	94.762	Peromyscus_maniculatus_bairdii
ENSCSEG00000007107	polr2eb	83	94.709	ENSPCIG00000007312	POLR2E	75	94.709	Phascolarctos_cinereus
ENSCSEG00000007107	polr2eb	92	98.571	ENSPFOG00000005734	polr2eb	100	98.571	Poecilia_formosa
ENSCSEG00000007107	polr2eb	100	98.361	ENSPLAG00000014496	polr2eb	100	98.571	Poecilia_latipinna
ENSCSEG00000007107	polr2eb	100	98.361	ENSPMEG00000008053	polr2eb	100	98.571	Poecilia_mexicana
ENSCSEG00000007107	polr2eb	100	98.361	ENSPREG00000006489	polr2eb	100	98.571	Poecilia_reticulata
ENSCSEG00000007107	polr2eb	92	87.204	ENSPPYG00000009305	POLR2E	100	87.204	Pongo_abelii
ENSCSEG00000007107	polr2eb	100	93.443	ENSPCOG00000014491	POLR2E	100	94.762	Propithecus_coquereli
ENSCSEG00000007107	polr2eb	75	100.000	ENSPVAG00000007718	-	65	100.000	Pteropus_vampyrus
ENSCSEG00000007107	polr2eb	83	98.421	ENSPNYG00000019797	polr2eb	96	98.421	Pundamilia_nyererei
ENSCSEG00000007107	polr2eb	100	96.721	ENSPNAG00000026263	POLR2E	100	97.143	Pygocentrus_nattereri
ENSCSEG00000007107	polr2eb	92	94.762	ENSRNOG00000013545	Polr2e	100	94.762	Rattus_norvegicus
ENSCSEG00000007107	polr2eb	100	93.443	ENSRBIG00000028726	-	100	94.762	Rhinopithecus_bieti
ENSCSEG00000007107	polr2eb	92	69.668	ENSRBIG00000027259	-	100	69.668	Rhinopithecus_bieti
ENSCSEG00000007107	polr2eb	100	93.443	ENSRROG00000043763	POLR2E	100	94.762	Rhinopithecus_roxellana
ENSCSEG00000007107	polr2eb	99	40.092	YBR154C	RPB5	99	45.000	Saccharomyces_cerevisiae
ENSCSEG00000007107	polr2eb	100	93.443	ENSSBOG00000027241	POLR2E	100	94.762	Saimiri_boliviensis_boliviensis
ENSCSEG00000007107	polr2eb	92	95.238	ENSSHAG00000010690	POLR2E	100	95.238	Sarcophilus_harrisii
ENSCSEG00000007107	polr2eb	100	97.814	ENSSFOG00015006073	polr2e	100	98.095	Scleropages_formosus
ENSCSEG00000007107	polr2eb	92	98.095	ENSSMAG00000012782	polr2eb	100	98.095	Scophthalmus_maximus
ENSCSEG00000007107	polr2eb	100	97.814	ENSSDUG00000003352	polr2eb	100	98.095	Seriola_dumerili
ENSCSEG00000007107	polr2eb	100	97.814	ENSSLDG00000004965	polr2eb	100	98.095	Seriola_lalandi_dorsalis
ENSCSEG00000007107	polr2eb	92	94.286	ENSSPUG00000006114	POLR2E	100	94.286	Sphenodon_punctatus
ENSCSEG00000007107	polr2eb	100	97.814	ENSSPAG00000017556	polr2eb	100	98.095	Stegastes_partitus
ENSCSEG00000007107	polr2eb	92	94.762	ENSSSCG00000021472	POLR2E	100	94.762	Sus_scrofa
ENSCSEG00000007107	polr2eb	75	83.333	ENSTGUG00000000922	POLR2E	99	86.429	Taeniopygia_guttata
ENSCSEG00000007107	polr2eb	100	97.814	ENSTRUG00000018238	polr2eb	100	97.814	Takifugu_rubripes
ENSCSEG00000007107	polr2eb	92	98.095	ENSTNIG00000013187	polr2eb	100	98.095	Tetraodon_nigroviridis
ENSCSEG00000007107	polr2eb	92	94.286	ENSTTRG00000001484	POLR2E	100	94.286	Tursiops_truncatus
ENSCSEG00000007107	polr2eb	100	93.443	ENSUAMG00000009166	POLR2E	100	93.443	Ursus_americanus
ENSCSEG00000007107	polr2eb	94	93.023	ENSVVUG00000022818	POLR2E	56	93.023	Vulpes_vulpes
ENSCSEG00000007107	polr2eb	92	95.238	ENSXETG00000003291	polr2e	100	95.238	Xenopus_tropicalis
ENSCSEG00000007107	polr2eb	100	98.361	ENSXCOG00000009197	polr2eb	100	98.361	Xiphophorus_couchianus
ENSCSEG00000007107	polr2eb	100	98.361	ENSXMAG00000026495	polr2eb	100	98.571	Xiphophorus_maculatus