EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000007214 (Gene tree)
Gene ID: 103395696
Gene Symbol: smfn
Alias: zgc:73191
Full Name: RNA exonuclease 2
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 5662 bases
Position: chr19:17082638-17088299
Accession: 103395696
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000011224	RNase_T	PF00929.24	1.9e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000011361	-	4714	XM_008333478	ENSCSEP00000011224	277 (aa)	XP_008331700	UPI0007DCAED7

Gene Model

Click here to download ENSCSEG00000007214's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000007214's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000007214	smfn	71	80.303	ENSG00000076043	REXO2	97	81.421	Homo_sapiens
ENSCSEG00000007214	smfn	71	80.808	ENSAMEG00000013263	REXO2	81	82.292	Ailuropoda_melanoleuca
ENSCSEG00000007214	smfn	65	85.083	ENSACIG00000023553	smfn	97	85.083	Amphilophus_citrinellus
ENSCSEG00000007214	smfn	55	71.519	ENSAOCG00000011565	smfn	96	71.519	Amphiprion_ocellaris
ENSCSEG00000007214	smfn	97	67.897	ENSAPEG00000012435	smfn	70	87.302	Amphiprion_percula
ENSCSEG00000007214	smfn	96	68.889	ENSATEG00000015385	smfn	96	68.889	Anabas_testudineus
ENSCSEG00000007214	smfn	68	78.307	ENSAPLG00000005045	REXO2	92	78.307	Anas_platyrhynchos
ENSCSEG00000007214	smfn	72	69.347	ENSACAG00000011631	REXO2	86	74.863	Anolis_carolinensis
ENSCSEG00000007214	smfn	71	80.808	ENSANAG00000020834	REXO2	81	82.292	Aotus_nancymaae
ENSCSEG00000007214	smfn	99	67.153	ENSACLG00000024566	smfn	97	81.081	Astatotilapia_calliptera
ENSCSEG00000007214	smfn	71	80.808	ENSBTAG00000005843	REXO2	81	82.292	Bos_taurus
ENSCSEG00000007214	smfn	69	44.737	WBGene00007429	C08B6.8	93	52.055	Caenorhabditis_elegans
ENSCSEG00000007214	smfn	71	79.798	ENSCJAG00000012434	REXO2	81	81.250	Callithrix_jacchus
ENSCSEG00000007214	smfn	71	79.798	ENSCAFG00000013511	REXO2	81	81.250	Canis_familiaris
ENSCSEG00000007214	smfn	71	80.808	ENSCAFG00020002513	REXO2	81	82.292	Canis_lupus_dingo
ENSCSEG00000007214	smfn	71	80.808	ENSCHIG00000009264	REXO2	81	82.292	Capra_hircus
ENSCSEG00000007214	smfn	69	70.157	ENSTSYG00000027948	-	97	70.526	Carlito_syrichta
ENSCSEG00000007214	smfn	78	76.279	ENSTSYG00000002237	REXO2	81	81.771	Carlito_syrichta
ENSCSEG00000007214	smfn	66	81.522	ENSCAPG00000006093	REXO2	97	81.967	Cavia_aperea
ENSCSEG00000007214	smfn	71	80.808	ENSCPOG00000010548	REXO2	81	82.292	Cavia_porcellus
ENSCSEG00000007214	smfn	71	80.808	ENSCCAG00000034979	REXO2	81	82.292	Cebus_capucinus
ENSCSEG00000007214	smfn	71	80.303	ENSCATG00000015278	REXO2	81	81.771	Cercocebus_atys
ENSCSEG00000007214	smfn	71	80.808	ENSCLAG00000011195	REXO2	81	82.292	Chinchilla_lanigera
ENSCSEG00000007214	smfn	71	80.303	ENSCSAG00000002754	REXO2	81	81.771	Chlorocebus_sabaeus
ENSCSEG00000007214	smfn	72	78.392	ENSCHOG00000000642	-	81	80.208	Choloepus_hoffmanni
ENSCSEG00000007214	smfn	51	72.857	ENSCPBG00000009359	REXO2	97	72.857	Chrysemys_picta_bellii
ENSCSEG00000007214	smfn	66	59.341	ENSCING00000009858	-	84	61.143	Ciona_intestinalis
ENSCSEG00000007214	smfn	71	80.303	ENSCANG00000034756	REXO2	81	81.771	Colobus_angolensis_palliatus
ENSCSEG00000007214	smfn	75	78.846	ENSCGRG00001019814	-	81	82.812	Cricetulus_griseus_chok1gshd
ENSCSEG00000007214	smfn	72	78.894	ENSCGRG00001010922	-	94	80.729	Cricetulus_griseus_chok1gshd
ENSCSEG00000007214	smfn	72	80.402	ENSCGRG00001013673	-	94	82.292	Cricetulus_griseus_chok1gshd
ENSCSEG00000007214	smfn	75	78.846	ENSCGRG00000006235	Rexo2	81	82.812	Cricetulus_griseus_crigri
ENSCSEG00000007214	smfn	67	82.162	ENSCVAG00000012008	smfn	100	82.162	Cyprinodon_variegatus
ENSCSEG00000007214	smfn	77	80.282	ENSDARG00000009806	smfn	73	85.492	Danio_rerio
ENSCSEG00000007214	smfn	63	83.429	ENSDNOG00000046533	REXO2	81	85.207	Dasypus_novemcinctus
ENSCSEG00000007214	smfn	71	80.808	ENSDORG00000011255	Rexo2	81	82.292	Dipodomys_ordii
ENSCSEG00000007214	smfn	69	64.211	ENSDORG00000025142	-	91	60.190	Dipodomys_ordii
ENSCSEG00000007214	smfn	68	51.323	FBgn0039115	CG10214	82	54.598	Drosophila_melanogaster
ENSCSEG00000007214	smfn	65	79.888	ENSEBUG00000013964	REXO2	60	80.682	Eptatretus_burgeri
ENSCSEG00000007214	smfn	78	75.113	ENSEASG00005006674	REXO2	92	75.113	Equus_asinus_asinus
ENSCSEG00000007214	smfn	78	75.113	ENSECAG00000005988	REXO2	92	75.113	Equus_caballus
ENSCSEG00000007214	smfn	89	71.542	ENSELUG00000020072	smfn	66	86.316	Esox_lucius
ENSCSEG00000007214	smfn	71	80.808	ENSFCAG00000018632	REXO2	81	82.292	Felis_catus
ENSCSEG00000007214	smfn	66	78.261	ENSFALG00000010044	REXO2	91	78.261	Ficedula_albicollis
ENSCSEG00000007214	smfn	71	80.808	ENSFDAG00000011764	REXO2	81	82.292	Fukomys_damarensis
ENSCSEG00000007214	smfn	68	86.170	ENSGMOG00000006370	smfn	94	87.845	Gadus_morhua
ENSCSEG00000007214	smfn	69	79.688	ENSGALG00000035980	REXO2	82	79.688	Gallus_gallus
ENSCSEG00000007214	smfn	85	72.653	ENSGAFG00000015349	smfn	69	83.420	Gambusia_affinis
ENSCSEG00000007214	smfn	70	83.077	ENSGACG00000020096	smfn	92	85.027	Gasterosteus_aculeatus
ENSCSEG00000007214	smfn	72	77.387	ENSGAGG00000021126	REXO2	83	79.581	Gopherus_agassizii
ENSCSEG00000007214	smfn	71	80.303	ENSGGOG00000023267	REXO2	81	81.771	Gorilla_gorilla
ENSCSEG00000007214	smfn	98	50.368	ENSHBUG00000020097	REXO2	99	50.000	Haplochromis_burtoni
ENSCSEG00000007214	smfn	71	80.303	ENSHGLG00000013556	REXO2	81	81.771	Heterocephalus_glaber_female
ENSCSEG00000007214	smfn	71	80.808	ENSHGLG00100005257	REXO2	81	82.292	Heterocephalus_glaber_male
ENSCSEG00000007214	smfn	65	76.667	ENSHCOG00000007122	smfn	98	76.667	Hippocampus_comes
ENSCSEG00000007214	smfn	99	69.091	ENSIPUG00000020440	rexo2	97	69.091	Ictalurus_punctatus
ENSCSEG00000007214	smfn	71	80.808	ENSSTOG00000012465	REXO2	81	82.292	Ictidomys_tridecemlineatus
ENSCSEG00000007214	smfn	71	80.808	ENSJJAG00000013710	-	81	82.292	Jaculus_jaculus
ENSCSEG00000007214	smfn	74	56.098	ENSJJAG00000022605	-	83	56.098	Jaculus_jaculus
ENSCSEG00000007214	smfn	98	65.845	ENSKMAG00000016795	smfn	99	66.549	Kryptolebias_marmoratus
ENSCSEG00000007214	smfn	65	84.530	ENSLBEG00000006021	smfn	96	84.530	Labrus_bergylta
ENSCSEG00000007214	smfn	83	62.500	ENSLACG00000018623	REXO2	93	62.500	Latimeria_chalumnae
ENSCSEG00000007214	smfn	71	84.772	ENSLOCG00000002389	smfn	91	85.938	Lepisosteus_oculatus
ENSCSEG00000007214	smfn	77	73.778	ENSLAFG00000012451	REXO2	95	73.778	Loxodonta_africana
ENSCSEG00000007214	smfn	71	80.303	ENSMFAG00000041155	REXO2	81	81.771	Macaca_fascicularis
ENSCSEG00000007214	smfn	71	80.303	ENSMMUG00000012269	REXO2	81	81.771	Macaca_mulatta
ENSCSEG00000007214	smfn	71	80.303	ENSMNEG00000033379	REXO2	81	81.771	Macaca_nemestrina
ENSCSEG00000007214	smfn	71	80.303	ENSMLEG00000036571	REXO2	81	81.771	Mandrillus_leucophaeus
ENSCSEG00000007214	smfn	92	72.031	ENSMAMG00000021209	smfn	97	68.613	Mastacembelus_armatus
ENSCSEG00000007214	smfn	99	67.153	ENSMZEG00005023224	-	96	66.788	Maylandia_zebra
ENSCSEG00000007214	smfn	99	67.153	ENSMZEG00005020730	REXO2	96	66.788	Maylandia_zebra
ENSCSEG00000007214	smfn	56	76.582	ENSMGAG00000003026	REXO2	97	76.582	Meleagris_gallopavo
ENSCSEG00000007214	smfn	75	78.846	ENSMAUG00000014576	Rexo2	81	82.812	Mesocricetus_auratus
ENSCSEG00000007214	smfn	71	80.808	ENSMICG00000010094	REXO2	81	82.292	Microcebus_murinus
ENSCSEG00000007214	smfn	79	76.606	ENSMOCG00000009016	Rexo2	81	82.812	Microtus_ochrogaster
ENSCSEG00000007214	smfn	97	64.945	ENSMMOG00000006430	smfn	97	64.815	Mola_mola
ENSCSEG00000007214	smfn	71	80.303	ENSMODG00000013913	REXO2	81	81.771	Monodelphis_domestica
ENSCSEG00000007214	smfn	97	67.870	ENSMALG00000018130	smfn	79	67.870	Monopterus_albus
ENSCSEG00000007214	smfn	74	79.902	MGP_CAROLIEiJ_G0032166	Rexo2	81	83.333	Mus_caroli
ENSCSEG00000007214	smfn	74	79.902	ENSMUSG00000032026	Rexo2	81	83.333	Mus_musculus
ENSCSEG00000007214	smfn	74	79.902	MGP_PahariEiJ_G0015034	Rexo2	81	83.333	Mus_pahari
ENSCSEG00000007214	smfn	74	79.902	MGP_SPRETEiJ_G0033305	Rexo2	81	83.333	Mus_spretus
ENSCSEG00000007214	smfn	71	80.808	ENSMPUG00000003947	REXO2	81	82.292	Mustela_putorius_furo
ENSCSEG00000007214	smfn	71	80.808	ENSMLUG00000009030	REXO2	81	82.292	Myotis_lucifugus
ENSCSEG00000007214	smfn	72	80.402	ENSNGAG00000008819	Rexo2	94	82.292	Nannospalax_galili
ENSCSEG00000007214	smfn	51	55.944	ENSNBRG00000015319	-	92	55.245	Neolamprologus_brichardi
ENSCSEG00000007214	smfn	67	80.541	ENSNBRG00000006529	smfn	97	80.541	Neolamprologus_brichardi
ENSCSEG00000007214	smfn	71	80.303	ENSNLEG00000029745	REXO2	81	81.771	Nomascus_leucogenys
ENSCSEG00000007214	smfn	71	79.798	ENSMEUG00000011558	REXO2	88	81.250	Notamacropus_eugenii
ENSCSEG00000007214	smfn	71	55.051	ENSOPRG00000011076	REXO2	54	76.744	Ochotona_princeps
ENSCSEG00000007214	smfn	66	81.522	ENSODEG00000009750	-	97	81.967	Octodon_degus
ENSCSEG00000007214	smfn	64	66.102	ENSODEG00000016046	-	84	68.047	Octodon_degus
ENSCSEG00000007214	smfn	73	83.251	ENSONIG00000001954	smfn	94	73.913	Oreochromis_niloticus
ENSCSEG00000007214	smfn	72	79.397	ENSOANG00000001754	REXO2	81	81.250	Ornithorhynchus_anatinus
ENSCSEG00000007214	smfn	71	80.808	ENSOCUG00000004274	REXO2	77	82.292	Oryctolagus_cuniculus
ENSCSEG00000007214	smfn	98	67.266	ENSORLG00000005119	smfn	88	67.266	Oryzias_latipes
ENSCSEG00000007214	smfn	98	67.266	ENSORLG00020010121	smfn	88	67.266	Oryzias_latipes_hni
ENSCSEG00000007214	smfn	98	66.906	ENSORLG00015015699	smfn	62	84.375	Oryzias_latipes_hsok
ENSCSEG00000007214	smfn	51	75.887	ENSOMEG00000008940	-	99	75.887	Oryzias_melastigma
ENSCSEG00000007214	smfn	72	80.000	ENSOMEG00000016878	REXO2	71	79.793	Oryzias_melastigma
ENSCSEG00000007214	smfn	71	80.808	ENSOGAG00000016860	REXO2	81	82.292	Otolemur_garnettii
ENSCSEG00000007214	smfn	71	81.633	ENSOARG00000001040	REXO2	91	81.865	Ovis_aries
ENSCSEG00000007214	smfn	71	80.303	ENSPPAG00000039849	REXO2	81	81.771	Pan_paniscus
ENSCSEG00000007214	smfn	71	80.808	ENSPPRG00000007255	REXO2	81	82.292	Panthera_pardus
ENSCSEG00000007214	smfn	66	81.522	ENSPTIG00000015578	REXO2	97	81.967	Panthera_tigris_altaica
ENSCSEG00000007214	smfn	71	80.303	ENSPTRG00000004306	REXO2	81	81.771	Pan_troglodytes
ENSCSEG00000007214	smfn	71	80.303	ENSPANG00000010675	REXO2	81	81.771	Papio_anubis
ENSCSEG00000007214	smfn	73	80.288	ENSPKIG00000000911	smfn	77	87.838	Paramormyrops_kingsleyae
ENSCSEG00000007214	smfn	70	80.000	ENSPSIG00000005151	REXO2	76	77.033	Pelodiscus_sinensis
ENSCSEG00000007214	smfn	66	89.617	ENSPMGG00000007442	smfn	97	89.617	Periophthalmus_magnuspinnatus
ENSCSEG00000007214	smfn	71	65.152	ENSPEMG00000001421	Rexo2	80	66.146	Peromyscus_maniculatus_bairdii
ENSCSEG00000007214	smfn	71	80.303	ENSPCIG00000011227	REXO2	51	81.771	Phascolarctos_cinereus
ENSCSEG00000007214	smfn	79	78.636	ENSPFOG00000017861	smfn	94	84.293	Poecilia_formosa
ENSCSEG00000007214	smfn	65	81.111	ENSPLAG00000007327	REXO2	65	81.871	Poecilia_latipinna
ENSCSEG00000007214	smfn	72	83.500	ENSPMEG00000017343	smfn	69	83.854	Poecilia_mexicana
ENSCSEG00000007214	smfn	73	82.587	ENSPREG00000016438	smfn	69	82.902	Poecilia_reticulata
ENSCSEG00000007214	smfn	71	80.303	ENSPPYG00000003895	REXO2	81	81.771	Pongo_abelii
ENSCSEG00000007214	smfn	78	73.973	ENSPCAG00000005237	REXO2	89	75.576	Procavia_capensis
ENSCSEG00000007214	smfn	65	77.778	ENSPCOG00000027639	REXO2	79	85.161	Propithecus_coquereli
ENSCSEG00000007214	smfn	71	68.500	ENSPVAG00000005295	REXO2	81	69.588	Pteropus_vampyrus
ENSCSEG00000007214	smfn	99	66.788	ENSPNYG00000018401	smfn	96	66.423	Pundamilia_nyererei
ENSCSEG00000007214	smfn	83	74.694	ENSPNAG00000005290	smfn	97	71.053	Pygocentrus_nattereri
ENSCSEG00000007214	smfn	74	80.392	ENSRNOG00000018939	Rexo2	81	83.854	Rattus_norvegicus
ENSCSEG00000007214	smfn	71	80.303	ENSRBIG00000037809	REXO2	81	81.771	Rhinopithecus_bieti
ENSCSEG00000007214	smfn	71	80.303	ENSRROG00000038928	REXO2	81	81.771	Rhinopithecus_roxellana
ENSCSEG00000007214	smfn	64	44.086	YLR059C	REX2	69	44.086	Saccharomyces_cerevisiae
ENSCSEG00000007214	smfn	71	80.808	ENSSBOG00000028651	REXO2	81	82.292	Saimiri_boliviensis_boliviensis
ENSCSEG00000007214	smfn	73	78.818	ENSSHAG00000008008	REXO2	82	81.771	Sarcophilus_harrisii
ENSCSEG00000007214	smfn	66	85.246	ENSSFOG00015022414	smfn	97	85.246	Scleropages_formosus
ENSCSEG00000007214	smfn	98	66.912	ENSSMAG00000003168	smfn	99	66.544	Scophthalmus_maximus
ENSCSEG00000007214	smfn	97	70.758	ENSSDUG00000015624	smfn	97	70.758	Seriola_dumerili
ENSCSEG00000007214	smfn	97	70.504	ENSSLDG00000014005	smfn	97	70.504	Seriola_lalandi_dorsalis
ENSCSEG00000007214	smfn	56	75.484	ENSSPUG00000006005	REXO2	83	75.484	Sphenodon_punctatus
ENSCSEG00000007214	smfn	65	88.950	ENSSPAG00000001530	smfn	97	88.950	Stegastes_partitus
ENSCSEG00000007214	smfn	71	80.808	ENSSSCG00000015056	REXO2	81	82.292	Sus_scrofa
ENSCSEG00000007214	smfn	70	77.835	ENSTGUG00000000121	REXO2	82	78.125	Taeniopygia_guttata
ENSCSEG00000007214	smfn	97	64.000	ENSTRUG00000021529	smfn	99	63.899	Takifugu_rubripes
ENSCSEG00000007214	smfn	69	83.684	ENSTNIG00000008588	smfn	84	83.684	Tetraodon_nigroviridis
ENSCSEG00000007214	smfn	75	78.744	ENSTBEG00000017040	REXO2	81	82.292	Tupaia_belangeri
ENSCSEG00000007214	smfn	76	76.777	ENSTTRG00000014928	REXO2	89	76.777	Tursiops_truncatus
ENSCSEG00000007214	smfn	71	74.000	ENSUAMG00000019096	REXO2	79	85.161	Ursus_americanus
ENSCSEG00000007214	smfn	71	80.808	ENSUMAG00000003770	REXO2	81	82.292	Ursus_maritimus
ENSCSEG00000007214	smfn	66	63.587	ENSVPAG00000006301	REXO2	98	63.587	Vicugna_pacos
ENSCSEG00000007214	smfn	71	80.808	ENSVVUG00000025223	REXO2	81	82.292	Vulpes_vulpes
ENSCSEG00000007214	smfn	78	76.037	ENSXETG00000012648	rexo2	78	82.292	Xenopus_tropicalis
ENSCSEG00000007214	smfn	68	79.365	ENSXCOG00000018838	smfn	94	80.978	Xiphophorus_couchianus
ENSCSEG00000007214	smfn	85	72.269	ENSXMAG00000021125	smfn	76	72.269	Xiphophorus_maculatus