EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000007589 (Gene tree)
Gene ID: 103385130
Gene Symbol: hnrnpa1a
Alias: zgc:66127
Full Name: heterogeneous nuclear ribonucleoprotein A1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 43739 bases
Position: chr10:13190563-13234301
Accession: 103385130
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000011816	RRM_1	PF00076.22	2.4e-35	1	2
ENSCSEP00000011816	RRM_1	PF00076.22	2.4e-35	2	2
ENSCSEP00000011792	RRM_1	PF00076.22	4.2e-35	1	2
ENSCSEP00000011792	RRM_1	PF00076.22	4.2e-35	2	2
ENSCSEP00000011779	RRM_1	PF00076.22	5.2e-35	1	2
ENSCSEP00000011779	RRM_1	PF00076.22	5.2e-35	2	2
ENSCSEP00000011802	RRM_1	PF00076.22	5.2e-35	1	2
ENSCSEP00000011802	RRM_1	PF00076.22	5.2e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000011932	-	1760	-	ENSCSEP00000011792	328 (aa)	-	-
ENSCSET00000011957	-	816	-	ENSCSEP00000011816	271 (aa)	-	-
ENSCSET00000011920	-	5938	XM_008318911	ENSCSEP00000011779	349 (aa)	XP_008317133	UPI000494F07C
ENSCSET00000011943	-	1564	-	ENSCSEP00000011802	350 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000007589's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000007589's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000007589	hnrnpa1a	68	57.778	ENSCSEG00000003421	hnrnpa0b	77	49.388
ENSCSEG00000007589	hnrnpa1a	63	41.176	ENSCSEG00000011636	hnrnpaba	74	38.288
ENSCSEG00000007589	hnrnpa1a	96	30.696	ENSCSEG00000003266	-	69	46.032
ENSCSEG00000007589	hnrnpa1a	63	44.715	ENSCSEG00000013549	msi2a	68	44.715
ENSCSEG00000007589	hnrnpa1a	71	39.429	ENSCSEG00000011032	MSI1	57	39.560
ENSCSEG00000007589	hnrnpa1a	70	31.122	ENSCSEG00000005274	tardbpl	62	30.964
ENSCSEG00000007589	hnrnpa1a	72	80.412	ENSCSEG00000005613	HNRNPA3	75	70.213
ENSCSEG00000007589	hnrnpa1a	71	41.989	ENSCSEG00000008352	-	59	40.909
ENSCSEG00000007589	hnrnpa1a	76	33.333	ENSCSEG00000011697	-	60	32.432
ENSCSEG00000007589	hnrnpa1a	88	37.847	ENSCSEG00000010909	hnrnpd	65	39.815
ENSCSEG00000007589	hnrnpa1a	67	54.237	ENSCSEG00000014051	-	73	54.237
ENSCSEG00000007589	hnrnpa1a	76	34.800	ENSCSEG00000010345	-	68	36.161
ENSCSEG00000007589	hnrnpa1a	71	41.758	ENSCSEG00000005834	-	55	41.117

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000007589	hnrnpa1a	83	83.628	ENSAPOG00000019369	-	68	89.520	Acanthochromis_polyacanthus
ENSCSEG00000007589	hnrnpa1a	65	55.114	ENSACIG00000021815	-	90	55.135	Amphilophus_citrinellus
ENSCSEG00000007589	hnrnpa1a	83	83.628	ENSAOCG00000005289	-	67	89.520	Amphiprion_ocellaris
ENSCSEG00000007589	hnrnpa1a	83	83.628	ENSAPEG00000004179	-	67	89.520	Amphiprion_percula
ENSCSEG00000007589	hnrnpa1a	83	81.250	ENSATEG00000022918	hnrnpa1a	92	88.718	Anabas_testudineus
ENSCSEG00000007589	hnrnpa1a	65	59.119	ENSATEG00000003423	-	75	59.119	Anabas_testudineus
ENSCSEG00000007589	hnrnpa1a	67	57.143	ENSACAG00000017109	-	71	53.017	Anolis_carolinensis
ENSCSEG00000007589	hnrnpa1a	90	82.222	ENSACLG00000006940	-	68	87.500	Astatotilapia_calliptera
ENSCSEG00000007589	hnrnpa1a	68	82.609	ENSAMXG00000006296	hnrnpa1a	88	59.574	Astyanax_mexicanus
ENSCSEG00000007589	hnrnpa1a	67	61.017	ENSAMXG00000037730	-	63	57.014	Astyanax_mexicanus
ENSCSEG00000007589	hnrnpa1a	80	82.870	ENSCVAG00000012637	hnrnpa1a	66	86.784	Cyprinodon_variegatus
ENSCSEG00000007589	hnrnpa1a	69	81.915	ENSDARG00000011020	hnrnpa1a	86	62.090	Danio_rerio
ENSCSEG00000007589	hnrnpa1a	74	55.838	ENSDORG00000026425	-	68	50.633	Dipodomys_ordii
ENSCSEG00000007589	hnrnpa1a	70	88.482	ENSELUG00000007372	-	51	90.110	Esox_lucius
ENSCSEG00000007589	hnrnpa1a	68	86.413	ENSGMOG00000017950	hnrnpa1a	50	85.946	Gadus_morhua
ENSCSEG00000007589	hnrnpa1a	68	60.335	ENSGMOG00000020353	-	97	59.893	Gadus_morhua
ENSCSEG00000007589	hnrnpa1a	83	82.667	ENSGAFG00000007751	-	66	88.596	Gambusia_affinis
ENSCSEG00000007589	hnrnpa1a	66	52.247	ENSGAFG00000016803	-	64	50.000	Gambusia_affinis
ENSCSEG00000007589	hnrnpa1a	77	81.517	ENSGACG00000009435	-	60	85.405	Gasterosteus_aculeatus
ENSCSEG00000007589	hnrnpa1a	89	81.967	ENSHBUG00000005647	hnrnpa1a	67	88.546	Haplochromis_burtoni
ENSCSEG00000007589	hnrnpa1a	70	83.069	ENSIPUG00000022440	-	75	80.571	Ictalurus_punctatus
ENSCSEG00000007589	hnrnpa1a	68	60.112	ENSIPUG00000001991	-	79	58.974	Ictalurus_punctatus
ENSCSEG00000007589	hnrnpa1a	70	84.699	ENSIPUG00000002023	hnrnpa1a	76	84.659	Ictalurus_punctatus
ENSCSEG00000007589	hnrnpa1a	67	66.298	ENSJJAG00000009178	-	89	53.994	Jaculus_jaculus
ENSCSEG00000007589	hnrnpa1a	99	80.857	ENSKMAG00000020859	-	67	89.474	Kryptolebias_marmoratus
ENSCSEG00000007589	hnrnpa1a	70	87.336	ENSLBEG00000010010	hnrnpa1a	65	87.773	Labrus_bergylta
ENSCSEG00000007589	hnrnpa1a	68	71.351	ENSMFAG00000028351	-	90	57.049	Macaca_fascicularis
ENSCSEG00000007589	hnrnpa1a	83	82.589	ENSMAMG00000007606	-	91	78.730	Mastacembelus_armatus
ENSCSEG00000007589	hnrnpa1a	89	81.967	ENSMZEG00005027173	hnrnpa1a	68	87.500	Maylandia_zebra
ENSCSEG00000007589	hnrnpa1a	70	89.474	ENSMMOG00000008251	hnrnpa1a	93	81.938	Mola_mola
ENSCSEG00000007589	hnrnpa1a	83	81.696	ENSMALG00000014091	hnrnpa1a	65	88.596	Monopterus_albus
ENSCSEG00000007589	hnrnpa1a	65	55.114	ENSMALG00000008886	-	94	54.082	Monopterus_albus
ENSCSEG00000007589	hnrnpa1a	84	82.819	ENSNBRG00000018441	-	67	88.546	Neolamprologus_brichardi
ENSCSEG00000007589	hnrnpa1a	67	58.523	ENSNBRG00000014469	-	87	55.789	Neolamprologus_brichardi
ENSCSEG00000007589	hnrnpa1a	99	79.118	ENSORLG00000008001	-	100	81.325	Oryzias_latipes
ENSCSEG00000007589	hnrnpa1a	74	47.030	ENSORLG00000029240	-	93	51.163	Oryzias_latipes
ENSCSEG00000007589	hnrnpa1a	99	79.118	ENSORLG00020006582	hnrnpa1a	98	87.264	Oryzias_latipes_hni
ENSCSEG00000007589	hnrnpa1a	65	51.744	ENSORLG00020006043	-	59	51.744	Oryzias_latipes_hni
ENSCSEG00000007589	hnrnpa1a	69	51.163	ENSORLG00020022498	-	84	51.163	Oryzias_latipes_hni
ENSCSEG00000007589	hnrnpa1a	99	79.118	ENSORLG00015022294	-	100	81.325	Oryzias_latipes_hsok
ENSCSEG00000007589	hnrnpa1a	99	78.963	ENSOMEG00000015959	-	100	78.313	Oryzias_melastigma
ENSCSEG00000007589	hnrnpa1a	68	57.222	ENSPMGG00000016392	-	98	53.000	Periophthalmus_magnuspinnatus
ENSCSEG00000007589	hnrnpa1a	87	80.591	ENSPMGG00000011804	hnrnpa1a	80	84.071	Periophthalmus_magnuspinnatus
ENSCSEG00000007589	hnrnpa1a	83	82.667	ENSPFOG00000001825	-	66	88.596	Poecilia_formosa
ENSCSEG00000007589	hnrnpa1a	83	82.667	ENSPMEG00000002425	-	66	88.596	Poecilia_mexicana
ENSCSEG00000007589	hnrnpa1a	67	58.523	ENSPNYG00000020729	-	92	57.778	Pundamilia_nyererei
ENSCSEG00000007589	hnrnpa1a	70	81.481	ENSPNAG00000021630	-	94	60.518	Pygocentrus_nattereri
ENSCSEG00000007589	hnrnpa1a	67	86.184	ENSPNAG00000007752	hnrnpa1a	86	76.818	Pygocentrus_nattereri
ENSCSEG00000007589	hnrnpa1a	67	59.036	ENSSMAG00000010279	-	93	59.036	Scophthalmus_maximus
ENSCSEG00000007589	hnrnpa1a	65	53.977	ENSSMAG00000010246	-	88	52.284	Scophthalmus_maximus
ENSCSEG00000007589	hnrnpa1a	68	92.391	ENSSMAG00000004641	hnrnpa1a	89	78.305	Scophthalmus_maximus
ENSCSEG00000007589	hnrnpa1a	68	58.659	ENSSDUG00000002431	-	85	58.659	Seriola_dumerili
ENSCSEG00000007589	hnrnpa1a	89	89.691	ENSSDUG00000013908	hnrnpa1a	90	88.660	Seriola_dumerili
ENSCSEG00000007589	hnrnpa1a	89	91.304	ENSSLDG00000003718	hnrnpa1a	93	83.260	Seriola_lalandi_dorsalis
ENSCSEG00000007589	hnrnpa1a	91	81.073	ENSSPAG00000018518	-	90	78.523	Stegastes_partitus
ENSCSEG00000007589	hnrnpa1a	80	80.645	ENSTRUG00000020491	-	69	83.333	Takifugu_rubripes
ENSCSEG00000007589	hnrnpa1a	69	59.890	ENSTNIG00000007398	-	80	59.777	Tetraodon_nigroviridis
ENSCSEG00000007589	hnrnpa1a	69	91.398	ENSXCOG00000009001	-	95	84.581	Xiphophorus_couchianus
ENSCSEG00000007589	hnrnpa1a	83	82.667	ENSXMAG00000008076	-	90	77.170	Xiphophorus_maculatus