EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000007905 (Gene tree)
Gene ID: 103378069
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 14269 bases
Position: chr4:11045187-11059455
Accession: 103378069
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000012392	RRM_4	PF10598.9	3.1e-48	1	1
ENSCSEP00000012332	RRM_4	PF10598.9	3.1e-48	1	1
ENSCSEP00000012392	U5_2-snRNA_bdg	PF10597.9	7.5e-74	1	1
ENSCSEP00000012332	U5_2-snRNA_bdg	PF10597.9	7.5e-74	1	1
ENSCSEP00000012392	PRO8NT	PF08082.11	6e-87	1	1
ENSCSEP00000012332	PRO8NT	PF08082.11	6e-87	1	1
ENSCSEP00000012392	U6-snRNA_bdg	PF10596.9	1.8e-89	1	1
ENSCSEP00000012332	U6-snRNA_bdg	PF10596.9	1.8e-89	1	1
ENSCSEP00000012392	PROCN	PF08083.11	2.4e-235	1	1
ENSCSEP00000012332	PROCN	PF08083.11	2.4e-235	1	1
ENSCSEP00000012392	PRP8_domainIV	PF12134.8	4.4e-130	1	1
ENSCSEP00000012332	PRP8_domainIV	PF12134.8	4.4e-130	1	1
ENSCSEP00000012392	PROCT	PF08084.11	8.9e-53	1	1
ENSCSEP00000012332	PROCT	PF08084.11	9e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000012479	-	7383	XM_008309126	ENSCSEP00000012332	2339 (aa)	XP_008307348	UPI000496B94E
ENSCSET00000012540	-	7005	-	ENSCSEP00000012392	2334 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000007905's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000007905's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000007905	prpf8	100	97.649	ENSG00000174231	PRPF8	100	97.649	Homo_sapiens
ENSCSEG00000007905	prpf8	100	99.359	ENSAPOG00000010079	prpf8	100	99.359	Acanthochromis_polyacanthus
ENSCSEG00000007905	prpf8	100	97.649	ENSAMEG00000007940	PRPF8	100	97.649	Ailuropoda_melanoleuca
ENSCSEG00000007905	prpf8	100	97.240	ENSACIG00000018280	prpf8	100	97.240	Amphilophus_citrinellus
ENSCSEG00000007905	prpf8	100	99.401	ENSAOCG00000010725	prpf8	100	99.401	Amphiprion_ocellaris
ENSCSEG00000007905	prpf8	100	99.401	ENSAPEG00000014397	prpf8	100	99.401	Amphiprion_percula
ENSCSEG00000007905	prpf8	100	98.546	ENSATEG00000010062	prpf8	100	98.546	Anabas_testudineus
ENSCSEG00000007905	prpf8	96	98.132	ENSAPLG00000010357	PRPF8	100	98.132	Anas_platyrhynchos
ENSCSEG00000007905	prpf8	83	96.136	ENSACAG00000014784	PRPF8	99	96.136	Anolis_carolinensis
ENSCSEG00000007905	prpf8	100	97.649	ENSANAG00000032629	PRPF8	100	97.649	Aotus_nancymaae
ENSCSEG00000007905	prpf8	100	98.553	ENSACLG00000020858	prpf8	100	98.553	Astatotilapia_calliptera
ENSCSEG00000007905	prpf8	100	98.888	ENSAMXG00000020291	prpf8	100	98.888	Astyanax_mexicanus
ENSCSEG00000007905	prpf8	100	97.649	ENSBTAG00000011488	PRPF8	100	97.649	Bos_taurus
ENSCSEG00000007905	prpf8	99	86.575	WBGene00004187	prp-8	99	86.938	Caenorhabditis_elegans
ENSCSEG00000007905	prpf8	100	97.649	ENSCJAG00000001911	PRPF8	100	97.649	Callithrix_jacchus
ENSCSEG00000007905	prpf8	100	97.649	ENSCAFG00000019221	PRPF8	100	97.649	Canis_familiaris
ENSCSEG00000007905	prpf8	96	98.126	ENSCAFG00020009943	PRPF8	100	98.126	Canis_lupus_dingo
ENSCSEG00000007905	prpf8	100	97.649	ENSCHIG00000017499	PRPF8	100	97.649	Capra_hircus
ENSCSEG00000007905	prpf8	100	97.649	ENSTSYG00000014120	PRPF8	100	97.649	Carlito_syrichta
ENSCSEG00000007905	prpf8	96	95.902	ENSCAPG00000009459	PRPF8	99	95.902	Cavia_aperea
ENSCSEG00000007905	prpf8	100	97.649	ENSCPOG00000010379	PRPF8	100	97.649	Cavia_porcellus
ENSCSEG00000007905	prpf8	100	97.649	ENSCCAG00000031983	-	100	97.649	Cebus_capucinus
ENSCSEG00000007905	prpf8	100	97.649	ENSCATG00000038595	PRPF8	100	97.649	Cercocebus_atys
ENSCSEG00000007905	prpf8	100	97.649	ENSCLAG00000004388	PRPF8	100	97.649	Chinchilla_lanigera
ENSCSEG00000007905	prpf8	100	97.649	ENSCSAG00000013929	PRPF8	100	97.649	Chlorocebus_sabaeus
ENSCSEG00000007905	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSCSEG00000007905	prpf8	100	97.691	ENSCPBG00000020409	PRPF8	100	97.691	Chrysemys_picta_bellii
ENSCSEG00000007905	prpf8	98	92.874	ENSCSAVG00000007825	-	100	91.151	Ciona_savignyi
ENSCSEG00000007905	prpf8	100	97.649	ENSCANG00000043088	PRPF8	100	97.649	Colobus_angolensis_palliatus
ENSCSEG00000007905	prpf8	73	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSCSEG00000007905	prpf8	100	98.804	ENSDARG00000026180	prpf8	100	98.804	Danio_rerio
ENSCSEG00000007905	prpf8	93	97.840	ENSDNOG00000018471	PRPF8	99	97.840	Dasypus_novemcinctus
ENSCSEG00000007905	prpf8	84	96.391	ENSDORG00000006185	Prpf8	96	96.391	Dipodomys_ordii
ENSCSEG00000007905	prpf8	99	91.617	FBgn0033688	Prp8	97	91.836	Drosophila_melanogaster
ENSCSEG00000007905	prpf8	100	92.347	ENSETEG00000017592	PRPF8	100	92.347	Echinops_telfairi
ENSCSEG00000007905	prpf8	99	93.439	ENSEBUG00000006548	prpf8	99	93.617	Eptatretus_burgeri
ENSCSEG00000007905	prpf8	100	97.649	ENSEASG00005009514	PRPF8	100	97.649	Equus_asinus_asinus
ENSCSEG00000007905	prpf8	97	98.154	ENSECAG00000021318	PRPF8	100	98.154	Equus_caballus
ENSCSEG00000007905	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSCSEG00000007905	prpf8	98	97.641	ENSELUG00000007120	prpf8	99	97.641	Esox_lucius
ENSCSEG00000007905	prpf8	100	97.649	ENSFCAG00000006297	PRPF8	100	97.649	Felis_catus
ENSCSEG00000007905	prpf8	100	97.777	ENSFALG00000006628	PRPF8	100	97.777	Ficedula_albicollis
ENSCSEG00000007905	prpf8	100	97.649	ENSFDAG00000004711	PRPF8	100	97.649	Fukomys_damarensis
ENSCSEG00000007905	prpf8	100	98.634	ENSFHEG00000021084	prpf8	100	98.634	Fundulus_heteroclitus
ENSCSEG00000007905	prpf8	100	96.913	ENSGMOG00000002028	prpf8	99	96.913	Gadus_morhua
ENSCSEG00000007905	prpf8	100	97.777	ENSGALG00000002943	PRPF8	100	97.777	Gallus_gallus
ENSCSEG00000007905	prpf8	99	99.013	ENSGAFG00000010337	prpf8	99	99.013	Gambusia_affinis
ENSCSEG00000007905	prpf8	100	99.146	ENSGACG00000008504	prpf8	100	99.059	Gasterosteus_aculeatus
ENSCSEG00000007905	prpf8	100	97.734	ENSGAGG00000008350	PRPF8	100	97.734	Gopherus_agassizii
ENSCSEG00000007905	prpf8	100	97.649	ENSGGOG00000005516	PRPF8	100	97.649	Gorilla_gorilla
ENSCSEG00000007905	prpf8	100	98.760	ENSHBUG00000016192	prpf8	100	98.760	Haplochromis_burtoni
ENSCSEG00000007905	prpf8	100	97.649	ENSHGLG00000012029	PRPF8	100	97.649	Heterocephalus_glaber_female
ENSCSEG00000007905	prpf8	100	97.649	ENSHGLG00100016494	PRPF8	100	97.649	Heterocephalus_glaber_male
ENSCSEG00000007905	prpf8	100	98.761	ENSHCOG00000016414	prpf8	100	98.761	Hippocampus_comes
ENSCSEG00000007905	prpf8	100	98.974	ENSIPUG00000023230	prpf8	100	98.974	Ictalurus_punctatus
ENSCSEG00000007905	prpf8	100	97.649	ENSSTOG00000005128	PRPF8	100	97.649	Ictidomys_tridecemlineatus
ENSCSEG00000007905	prpf8	100	95.511	ENSJJAG00000021159	Prpf8	100	95.511	Jaculus_jaculus
ENSCSEG00000007905	prpf8	100	98.591	ENSKMAG00000016118	prpf8	100	98.591	Kryptolebias_marmoratus
ENSCSEG00000007905	prpf8	100	99.230	ENSLBEG00000026903	prpf8	100	99.230	Labrus_bergylta
ENSCSEG00000007905	prpf8	95	95.539	ENSLACG00000010479	PRPF8	99	98.309	Latimeria_chalumnae
ENSCSEG00000007905	prpf8	99	98.547	ENSLOCG00000005409	prpf8	99	98.547	Lepisosteus_oculatus
ENSCSEG00000007905	prpf8	100	97.649	ENSLAFG00000015445	PRPF8	100	97.649	Loxodonta_africana
ENSCSEG00000007905	prpf8	100	97.649	ENSMFAG00000039995	PRPF8	100	97.649	Macaca_fascicularis
ENSCSEG00000007905	prpf8	100	97.649	ENSMMUG00000004820	PRPF8	100	97.649	Macaca_mulatta
ENSCSEG00000007905	prpf8	100	97.649	ENSMNEG00000035713	PRPF8	100	97.649	Macaca_nemestrina
ENSCSEG00000007905	prpf8	100	97.649	ENSMLEG00000037937	PRPF8	100	97.649	Mandrillus_leucophaeus
ENSCSEG00000007905	prpf8	100	99.188	ENSMAMG00000008919	prpf8	100	99.188	Mastacembelus_armatus
ENSCSEG00000007905	prpf8	100	98.553	ENSMZEG00005015073	prpf8	100	98.553	Maylandia_zebra
ENSCSEG00000007905	prpf8	100	97.777	ENSMGAG00000004769	PRPF8	100	97.777	Meleagris_gallopavo
ENSCSEG00000007905	prpf8	100	97.649	ENSMICG00000010320	PRPF8	100	97.649	Microcebus_murinus
ENSCSEG00000007905	prpf8	100	97.649	ENSMOCG00000016838	Prpf8	100	97.649	Microtus_ochrogaster
ENSCSEG00000007905	prpf8	100	98.803	ENSMMOG00000011887	prpf8	100	98.803	Mola_mola
ENSCSEG00000007905	prpf8	100	97.649	ENSMODG00000010480	PRPF8	100	97.649	Monodelphis_domestica
ENSCSEG00000007905	prpf8	97	98.353	ENSMALG00000003558	prpf8	100	98.353	Monopterus_albus
ENSCSEG00000007905	prpf8	100	97.606	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.606	Mus_caroli
ENSCSEG00000007905	prpf8	100	97.606	ENSMUSG00000020850	Prpf8	100	97.606	Mus_musculus
ENSCSEG00000007905	prpf8	100	97.563	MGP_PahariEiJ_G0017877	Prpf8	100	97.563	Mus_pahari
ENSCSEG00000007905	prpf8	100	97.606	MGP_SPRETEiJ_G0017583	Prpf8	100	97.606	Mus_spretus
ENSCSEG00000007905	prpf8	100	97.649	ENSMPUG00000013227	PRPF8	100	97.649	Mustela_putorius_furo
ENSCSEG00000007905	prpf8	100	97.523	ENSMLUG00000002666	PRPF8	100	97.523	Myotis_lucifugus
ENSCSEG00000007905	prpf8	100	95.896	ENSNGAG00000005305	Prpf8	100	95.896	Nannospalax_galili
ENSCSEG00000007905	prpf8	100	98.596	ENSNBRG00000013127	prpf8	100	98.596	Neolamprologus_brichardi
ENSCSEG00000007905	prpf8	97	96.636	ENSNLEG00000000897	PRPF8	98	96.636	Nomascus_leucogenys
ENSCSEG00000007905	prpf8	98	96.306	ENSMEUG00000015999	PRPF8	100	96.306	Notamacropus_eugenii
ENSCSEG00000007905	prpf8	100	95.896	ENSOPRG00000003102	PRPF8	100	95.682	Ochotona_princeps
ENSCSEG00000007905	prpf8	100	97.649	ENSODEG00000008468	PRPF8	100	97.649	Octodon_degus
ENSCSEG00000007905	prpf8	100	98.553	ENSONIG00000008153	prpf8	100	98.553	Oreochromis_niloticus
ENSCSEG00000007905	prpf8	82	99.159	ENSOANG00000004250	PRPF8	97	99.159	Ornithorhynchus_anatinus
ENSCSEG00000007905	prpf8	100	97.649	ENSOCUG00000000081	PRPF8	100	97.649	Oryctolagus_cuniculus
ENSCSEG00000007905	prpf8	100	98.173	ENSORLG00000008036	prpf8	100	98.216	Oryzias_latipes
ENSCSEG00000007905	prpf8	100	98.132	ENSORLG00020021070	prpf8	100	98.174	Oryzias_latipes_hni
ENSCSEG00000007905	prpf8	100	98.173	ENSORLG00015002340	prpf8	100	98.216	Oryzias_latipes_hsok
ENSCSEG00000007905	prpf8	100	96.602	ENSOMEG00000016866	prpf8	100	96.644	Oryzias_melastigma
ENSCSEG00000007905	prpf8	100	97.523	ENSOARG00000013312	PRPF8	100	97.523	Ovis_aries
ENSCSEG00000007905	prpf8	100	97.649	ENSPPAG00000042753	PRPF8	100	97.649	Pan_paniscus
ENSCSEG00000007905	prpf8	100	97.649	ENSPPRG00000008746	PRPF8	100	97.649	Panthera_pardus
ENSCSEG00000007905	prpf8	100	97.563	ENSPTIG00000019200	PRPF8	100	97.563	Panthera_tigris_altaica
ENSCSEG00000007905	prpf8	100	97.649	ENSPTRG00000039576	PRPF8	100	97.649	Pan_troglodytes
ENSCSEG00000007905	prpf8	98	98.132	ENSPANG00000024607	PRPF8	98	98.132	Papio_anubis
ENSCSEG00000007905	prpf8	100	98.465	ENSPKIG00000011201	prpf8	100	98.465	Paramormyrops_kingsleyae
ENSCSEG00000007905	prpf8	100	97.649	ENSPSIG00000013393	PRPF8	100	97.649	Pelodiscus_sinensis
ENSCSEG00000007905	prpf8	100	97.649	ENSPEMG00000021699	Prpf8	100	97.649	Peromyscus_maniculatus_bairdii
ENSCSEG00000007905	prpf8	96	93.898	ENSPMAG00000005438	prpf8	100	93.942	Petromyzon_marinus
ENSCSEG00000007905	prpf8	100	97.649	ENSPCIG00000022603	PRPF8	100	98.126	Phascolarctos_cinereus
ENSCSEG00000007905	prpf8	100	98.219	ENSPFOG00000007005	prpf8	100	98.219	Poecilia_formosa
ENSCSEG00000007905	prpf8	100	97.307	ENSPLAG00000020777	prpf8	100	97.307	Poecilia_latipinna
ENSCSEG00000007905	prpf8	100	98.219	ENSPMEG00000004051	prpf8	100	98.219	Poecilia_mexicana
ENSCSEG00000007905	prpf8	100	98.846	ENSPREG00000021902	prpf8	100	98.846	Poecilia_reticulata
ENSCSEG00000007905	prpf8	100	97.649	ENSPPYG00000007777	PRPF8	100	97.649	Pongo_abelii
ENSCSEG00000007905	prpf8	90	96.535	ENSPCAG00000008938	PRPF8	90	96.535	Procavia_capensis
ENSCSEG00000007905	prpf8	100	97.649	ENSPCOG00000015182	PRPF8	100	97.649	Propithecus_coquereli
ENSCSEG00000007905	prpf8	93	98.503	ENSPVAG00000002134	PRPF8	93	98.503	Pteropus_vampyrus
ENSCSEG00000007905	prpf8	100	98.760	ENSPNYG00000016356	prpf8	100	98.760	Pundamilia_nyererei
ENSCSEG00000007905	prpf8	100	99.145	ENSPNAG00000009247	prpf8	100	99.145	Pygocentrus_nattereri
ENSCSEG00000007905	prpf8	100	97.606	ENSRNOG00000003495	Prpf8	100	97.606	Rattus_norvegicus
ENSCSEG00000007905	prpf8	100	97.649	ENSRBIG00000031219	PRPF8	100	97.680	Rhinopithecus_bieti
ENSCSEG00000007905	prpf8	100	97.649	ENSRROG00000038014	PRPF8	100	97.680	Rhinopithecus_roxellana
ENSCSEG00000007905	prpf8	98	62.473	YHR165C	PRP8	95	62.559	Saccharomyces_cerevisiae
ENSCSEG00000007905	prpf8	100	97.649	ENSSBOG00000029717	PRPF8	100	97.649	Saimiri_boliviensis_boliviensis
ENSCSEG00000007905	prpf8	100	97.606	ENSSHAG00000006167	PRPF8	100	97.606	Sarcophilus_harrisii
ENSCSEG00000007905	prpf8	100	98.591	ENSSFOG00015013905	prpf8	100	98.591	Scleropages_formosus
ENSCSEG00000007905	prpf8	100	99.188	ENSSMAG00000017736	prpf8	100	99.188	Scophthalmus_maximus
ENSCSEG00000007905	prpf8	100	99.188	ENSSDUG00000003029	prpf8	100	99.188	Seriola_dumerili
ENSCSEG00000007905	prpf8	68	99.687	ENSSLDG00000017096	prpf8	100	99.687	Seriola_lalandi_dorsalis
ENSCSEG00000007905	prpf8	87	94.408	ENSSARG00000002892	PRPF8	87	94.408	Sorex_araneus
ENSCSEG00000007905	prpf8	100	97.606	ENSSPUG00000007463	PRPF8	100	97.606	Sphenodon_punctatus
ENSCSEG00000007905	prpf8	100	98.760	ENSSPAG00000015639	prpf8	100	98.760	Stegastes_partitus
ENSCSEG00000007905	prpf8	100	97.649	ENSSSCG00000017817	PRPF8	100	97.649	Sus_scrofa
ENSCSEG00000007905	prpf8	100	97.777	ENSTGUG00000005648	-	100	97.777	Taeniopygia_guttata
ENSCSEG00000007905	prpf8	52	98.604	ENSTGUG00000015597	-	95	98.604	Taeniopygia_guttata
ENSCSEG00000007905	prpf8	100	98.974	ENSTRUG00000015906	prpf8	100	98.974	Takifugu_rubripes
ENSCSEG00000007905	prpf8	95	99.522	ENSTNIG00000003460	prpf8	99	99.522	Tetraodon_nigroviridis
ENSCSEG00000007905	prpf8	93	98.843	ENSTBEG00000006431	PRPF8	93	98.843	Tupaia_belangeri
ENSCSEG00000007905	prpf8	100	97.050	ENSTTRG00000006869	PRPF8	100	97.050	Tursiops_truncatus
ENSCSEG00000007905	prpf8	54	96.516	ENSUAMG00000015644	-	96	96.516	Ursus_americanus
ENSCSEG00000007905	prpf8	100	97.392	ENSUMAG00000009385	PRPF8	100	97.392	Ursus_maritimus
ENSCSEG00000007905	prpf8	71	97.931	ENSVPAG00000006063	-	71	97.931	Vicugna_pacos
ENSCSEG00000007905	prpf8	100	97.649	ENSVVUG00000021695	PRPF8	99	97.649	Vulpes_vulpes
ENSCSEG00000007905	prpf8	100	97.607	ENSXETG00000022259	prpf8	100	97.607	Xenopus_tropicalis
ENSCSEG00000007905	prpf8	100	98.804	ENSXCOG00000012775	prpf8	100	98.804	Xiphophorus_couchianus
ENSCSEG00000007905	prpf8	100	98.847	ENSXMAG00000008505	prpf8	100	98.847	Xiphophorus_maculatus