EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000007972 (Gene tree)
Gene ID: 103393907
Gene Symbol: -
Alias: -
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 2627 bases
Position: chr18:1825608-1828234
Accession: 103393907
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000012349	GTP_EFTU	PF00009.27	2.5e-38	1	1
ENSCSEP00000012349	GTP_EFTU_D2	PF03144.25	1.3e-14	1	1
ENSCSEP00000012349	GTP_EFTU_D3	PF03143.17	4.8e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000012497	-	1245	XM_008331028	ENSCSEP00000012349	414 (aa)	XP_008329250	-

Gene Model

Click here to download ENSCSEG00000007972's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000007972's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000007972	-	95	31.266	ENSCSEG00000013841	tufm	83	31.266
ENSCSEG00000007972	-	100	87.923	ENSCSEG00000008004	-	90	87.923
ENSCSEG00000007972	-	92	69.474	ENSCSEG00000019807	si:dkey-37o8.1	83	69.474
ENSCSEG00000007972	-	98	87.624	ENSCSEG00000008011	-	90	87.198
ENSCSEG00000007972	-	100	85.990	ENSCSEG00000000544	eef1a1b	90	85.990
ENSCSEG00000007972	-	95	34.684	ENSCSEG00000019708	GSPT1	66	34.860
ENSCSEG00000007972	-	95	39.747	ENSCSEG00000002794	hbs1l	57	39.747
ENSCSEG00000007972	-	99	87.651	ENSCSEG00000007992	-	99	87.651

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000007972	-	98	82.921	ENSAPOG00000004714	-	89	82.609	Acanthochromis_polyacanthus
ENSCSEG00000007972	-	100	86.232	ENSACIG00000001219	-	99	86.232	Amphilophus_citrinellus
ENSCSEG00000007972	-	100	85.266	ENSAOCG00000022039	-	90	85.266	Amphiprion_ocellaris
ENSCSEG00000007972	-	98	85.644	ENSAOCG00000022002	-	100	85.266	Amphiprion_ocellaris
ENSCSEG00000007972	-	100	85.024	ENSAPEG00000016361	-	90	85.024	Amphiprion_percula
ENSCSEG00000007972	-	98	86.139	ENSATEG00000003244	-	87	85.749	Anabas_testudineus
ENSCSEG00000007972	-	100	85.749	ENSACLG00000022560	-	89	85.749	Astatotilapia_calliptera
ENSCSEG00000007972	-	100	83.092	WBGene00001169	eef-1A.2	89	83.092	Caenorhabditis_elegans
ENSCSEG00000007972	-	100	83.092	WBGene00001168	eef-1A.1	89	83.092	Caenorhabditis_elegans
ENSCSEG00000007972	-	100	77.273	ENSCING00000007703	-	89	77.273	Ciona_intestinalis
ENSCSEG00000007972	-	98	79.557	ENSCING00000018894	-	89	79.567	Ciona_intestinalis
ENSCSEG00000007972	-	99	83.535	ENSCING00000021478	-	90	83.535	Ciona_intestinalis
ENSCSEG00000007972	-	98	78.186	ENSCING00000005126	-	90	78.469	Ciona_intestinalis
ENSCSEG00000007972	-	99	75.485	ENSCSAVG00000001085	-	81	75.485	Ciona_savignyi
ENSCSEG00000007972	-	98	78.325	ENSCSAVG00000009663	-	89	78.365	Ciona_savignyi
ENSCSEG00000007972	-	99	81.707	ENSCSAVG00000006357	-	82	93.137	Ciona_savignyi
ENSCSEG00000007972	-	98	76.773	ENSCSAVG00000003196	-	89	77.088	Ciona_savignyi
ENSCSEG00000007972	-	98	86.881	ENSCVAG00000019356	-	90	86.473	Cyprinodon_variegatus
ENSCSEG00000007972	-	100	83.092	FBgn0284245	eEF1alpha1	89	83.092	Drosophila_melanogaster
ENSCSEG00000007972	-	98	83.911	FBgn0000557	eEF1alpha2	90	83.575	Drosophila_melanogaster
ENSCSEG00000007972	-	99	81.114	ENSEBUG00000015814	-	90	81.114	Eptatretus_burgeri
ENSCSEG00000007972	-	100	87.923	ENSFHEG00000015054	-	90	87.923	Fundulus_heteroclitus
ENSCSEG00000007972	-	98	86.139	ENSGAFG00000014646	-	90	85.749	Gambusia_affinis
ENSCSEG00000007972	-	100	85.266	ENSGACG00000002143	-	90	85.266	Gasterosteus_aculeatus
ENSCSEG00000007972	-	98	86.386	ENSGACG00000002182	-	90	85.990	Gasterosteus_aculeatus
ENSCSEG00000007972	-	61	79.528	ENSHBUG00000017166	-	95	79.528	Haplochromis_burtoni
ENSCSEG00000007972	-	99	82.324	ENSHCOG00000008489	-	90	82.324	Hippocampus_comes
ENSCSEG00000007972	-	98	86.139	ENSHCOG00000008468	-	90	85.749	Hippocampus_comes
ENSCSEG00000007972	-	98	85.396	ENSLBEG00000002759	-	90	85.024	Labrus_bergylta
ENSCSEG00000007972	-	99	84.988	ENSLBEG00000002955	-	90	84.988	Labrus_bergylta
ENSCSEG00000007972	-	98	87.129	ENSMAMG00000007715	-	90	86.715	Mastacembelus_armatus
ENSCSEG00000007972	-	99	83.535	ENSMMOG00000001106	-	89	83.535	Mola_mola
ENSCSEG00000007972	-	99	76.271	ENSMMOG00000018160	-	99	75.758	Mola_mola
ENSCSEG00000007972	-	98	84.901	ENSMMOG00000001165	-	99	83.838	Mola_mola
ENSCSEG00000007972	-	86	83.662	ENSNBRG00000017346	-	81	83.662	Neolamprologus_brichardi
ENSCSEG00000007972	-	73	86.842	ENSONIG00000017760	-	85	86.842	Oreochromis_niloticus
ENSCSEG00000007972	-	98	85.891	ENSORLG00000007614	eef1a	90	85.507	Oryzias_latipes
ENSCSEG00000007972	-	100	88.164	ENSORLG00015002397	-	90	88.164	Oryzias_latipes_hsok
ENSCSEG00000007972	-	98	86.139	ENSOMEG00000018226	-	90	85.749	Oryzias_melastigma
ENSCSEG00000007972	-	98	87.129	ENSPMGG00000023911	-	90	86.715	Periophthalmus_magnuspinnatus
ENSCSEG00000007972	-	95	49.747	ENSPMGG00000022427	-	79	72.340	Periophthalmus_magnuspinnatus
ENSCSEG00000007972	-	98	86.139	ENSPFOG00000003924	-	100	85.749	Poecilia_formosa
ENSCSEG00000007972	-	98	86.139	ENSPLAG00000004316	-	90	85.749	Poecilia_latipinna
ENSCSEG00000007972	-	98	86.386	ENSPMEG00000001010	-	90	85.990	Poecilia_mexicana
ENSCSEG00000007972	-	100	87.681	ENSPREG00000008243	-	90	87.681	Poecilia_reticulata
ENSCSEG00000007972	-	100	85.749	ENSPNYG00000007263	-	89	85.749	Pundamilia_nyererei
ENSCSEG00000007972	-	95	76.709	YBR118W	TEF2	90	76.029	Saccharomyces_cerevisiae
ENSCSEG00000007972	-	95	76.709	YPR080W	TEF1	90	76.029	Saccharomyces_cerevisiae
ENSCSEG00000007972	-	59	79.184	ENSSMAG00000016277	-	100	78.824	Scophthalmus_maximus
ENSCSEG00000007972	-	98	75.352	ENSSMAG00000018469	-	90	75.229	Scophthalmus_maximus
ENSCSEG00000007972	-	98	85.891	ENSSDUG00000008198	-	90	85.507	Seriola_dumerili
ENSCSEG00000007972	-	98	84.406	ENSSPAG00000001710	-	90	84.058	Stegastes_partitus
ENSCSEG00000007972	-	98	86.139	ENSTRUG00000005727	ef-1a	90	85.749	Takifugu_rubripes
ENSCSEG00000007972	-	99	86.441	ENSTRUG00000005066	-	89	86.441	Takifugu_rubripes
ENSCSEG00000007972	-	97	84.080	ENSTNIG00000002617	-	84	84.080	Tetraodon_nigroviridis
ENSCSEG00000007972	-	98	86.881	ENSTNIG00000002619	-	90	86.473	Tetraodon_nigroviridis
ENSCSEG00000007972	-	98	86.139	ENSXCOG00000001542	-	90	85.749	Xiphophorus_couchianus