EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000007992 (Gene tree)
Gene ID: 103393911
Gene Symbol: -
Alias: -
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 2216 bases
Position: chr18:1829281-1831496
Accession: 103393911
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000012380	GTP_EFTU	PF00009.27	4.6e-38	1	1
ENSCSEP00000012380	GTP_EFTU_D2	PF03144.25	5e-15	1	1
ENSCSEP00000012380	GTP_EFTU_D3	PF03143.17	2.2e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000012528	-	1248	XM_008331031	ENSCSEP00000012380	415 (aa)	XP_008329253	-

Gene Model

Click here to download ENSCSEG00000007992's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000007992's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000007992	-	99	85.194	ENSCSEG00000000544	eef1a1b	89	85.194
ENSCSEG00000007992	-	99	88.136	ENSCSEG00000008004	-	89	88.136
ENSCSEG00000007992	-	94	30.750	ENSCSEG00000013841	tufm	83	30.750
ENSCSEG00000007992	-	95	39.646	ENSCSEG00000002794	hbs1l	57	39.646
ENSCSEG00000007992	-	99	87.651	ENSCSEG00000007972	-	99	87.651
ENSCSEG00000007992	-	95	36.111	ENSCSEG00000019708	GSPT1	67	36.294
ENSCSEG00000007992	-	93	66.412	ENSCSEG00000019807	si:dkey-37o8.1	86	66.412
ENSCSEG00000007992	-	97	84.864	ENSCSEG00000008011	-	89	84.709

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000007992	-	97	82.630	ENSAPOG00000004714	-	89	82.524	Acanthochromis_polyacanthus
ENSCSEG00000007992	-	99	85.266	ENSACIG00000001219	-	100	85.266	Amphilophus_citrinellus
ENSCSEG00000007992	-	99	84.951	ENSAOCG00000022039	-	89	84.951	Amphiprion_ocellaris
ENSCSEG00000007992	-	97	85.608	ENSAOCG00000022002	-	99	85.437	Amphiprion_ocellaris
ENSCSEG00000007992	-	99	84.709	ENSAPEG00000016361	-	89	84.709	Amphiprion_percula
ENSCSEG00000007992	-	97	85.856	ENSATEG00000003244	-	87	85.680	Anabas_testudineus
ENSCSEG00000007992	-	99	84.300	ENSACLG00000022560	-	90	84.300	Astatotilapia_calliptera
ENSCSEG00000007992	-	99	80.723	WBGene00001169	eef-1A.2	90	80.723	Caenorhabditis_elegans
ENSCSEG00000007992	-	99	80.723	WBGene00001168	eef-1A.1	90	80.723	Caenorhabditis_elegans
ENSCSEG00000007992	-	99	76.739	ENSCING00000007703	-	89	76.739	Ciona_intestinalis
ENSCSEG00000007992	-	97	80.590	ENSCING00000005126	-	89	80.769	Ciona_intestinalis
ENSCSEG00000007992	-	97	79.557	ENSCING00000018894	-	89	79.759	Ciona_intestinalis
ENSCSEG00000007992	-	99	80.340	ENSCING00000021478	-	90	80.340	Ciona_intestinalis
ENSCSEG00000007992	-	99	81.907	ENSCSAVG00000006357	-	80	93.137	Ciona_savignyi
ENSCSEG00000007992	-	97	78.818	ENSCSAVG00000009663	-	89	79.036	Ciona_savignyi
ENSCSEG00000007992	-	97	76.456	ENSCSAVG00000003196	-	89	76.722	Ciona_savignyi
ENSCSEG00000007992	-	98	76.214	ENSCSAVG00000001085	-	81	76.214	Ciona_savignyi
ENSCSEG00000007992	-	97	86.352	ENSCVAG00000019356	-	89	86.165	Cyprinodon_variegatus
ENSCSEG00000007992	-	99	82.892	FBgn0284245	eEF1alpha1	90	82.892	Drosophila_melanogaster
ENSCSEG00000007992	-	97	83.911	FBgn0000557	eEF1alpha2	89	83.777	Drosophila_melanogaster
ENSCSEG00000007992	-	99	80.340	ENSEBUG00000015814	-	90	80.340	Eptatretus_burgeri
ENSCSEG00000007992	-	99	87.167	ENSFHEG00000015054	-	89	87.167	Fundulus_heteroclitus
ENSCSEG00000007992	-	97	85.856	ENSGAFG00000014646	-	89	85.680	Gambusia_affinis
ENSCSEG00000007992	-	99	84.223	ENSGACG00000002143	-	89	84.223	Gasterosteus_aculeatus
ENSCSEG00000007992	-	97	85.360	ENSGACG00000002182	-	89	85.194	Gasterosteus_aculeatus
ENSCSEG00000007992	-	61	79.051	ENSHBUG00000017166	-	95	79.051	Haplochromis_burtoni
ENSCSEG00000007992	-	97	85.112	ENSHCOG00000008468	-	89	84.951	Hippocampus_comes
ENSCSEG00000007992	-	99	82.082	ENSHCOG00000008489	-	90	82.082	Hippocampus_comes
ENSCSEG00000007992	-	97	84.119	ENSLBEG00000002759	-	89	83.981	Labrus_bergylta
ENSCSEG00000007992	-	99	83.981	ENSLBEG00000002955	-	90	83.981	Labrus_bergylta
ENSCSEG00000007992	-	97	85.360	ENSMAMG00000007715	-	89	85.194	Mastacembelus_armatus
ENSCSEG00000007992	-	97	85.112	ENSMMOG00000001165	-	99	84.264	Mola_mola
ENSCSEG00000007992	-	98	75.430	ENSMMOG00000018160	-	99	74.872	Mola_mola
ENSCSEG00000007992	-	99	82.567	ENSMMOG00000001106	-	90	82.567	Mola_mola
ENSCSEG00000007992	-	86	81.972	ENSNBRG00000017346	-	81	81.972	Neolamprologus_brichardi
ENSCSEG00000007992	-	73	84.818	ENSONIG00000017760	-	85	84.818	Oreochromis_niloticus
ENSCSEG00000007992	-	97	85.360	ENSORLG00000007614	eef1a	89	85.194	Oryzias_latipes
ENSCSEG00000007992	-	99	86.925	ENSORLG00015002397	-	89	86.925	Oryzias_latipes_hsok
ENSCSEG00000007992	-	97	85.360	ENSOMEG00000018226	-	89	85.194	Oryzias_melastigma
ENSCSEG00000007992	-	97	86.600	ENSPMGG00000023911	-	89	86.408	Periophthalmus_magnuspinnatus
ENSCSEG00000007992	-	97	48.762	ENSPMGG00000022427	-	79	72.340	Periophthalmus_magnuspinnatus
ENSCSEG00000007992	-	97	85.856	ENSPFOG00000003924	-	99	85.680	Poecilia_formosa
ENSCSEG00000007992	-	97	85.856	ENSPLAG00000004316	-	89	85.680	Poecilia_latipinna
ENSCSEG00000007992	-	97	86.104	ENSPMEG00000001010	-	89	85.922	Poecilia_mexicana
ENSCSEG00000007992	-	99	87.167	ENSPREG00000008243	-	89	87.167	Poecilia_reticulata
ENSCSEG00000007992	-	99	84.300	ENSPNYG00000007263	-	90	84.300	Pundamilia_nyererei
ENSCSEG00000007992	-	95	78.228	YBR118W	TEF2	90	77.913	Saccharomyces_cerevisiae
ENSCSEG00000007992	-	95	78.228	YPR080W	TEF1	90	77.913	Saccharomyces_cerevisiae
ENSCSEG00000007992	-	59	79.508	ENSSMAG00000016277	-	99	79.447	Scophthalmus_maximus
ENSCSEG00000007992	-	97	74.588	ENSSMAG00000018469	-	90	74.654	Scophthalmus_maximus
ENSCSEG00000007992	-	97	85.360	ENSSDUG00000008198	-	89	85.194	Seriola_dumerili
ENSCSEG00000007992	-	97	86.352	ENSSPAG00000001710	-	89	86.165	Stegastes_partitus
ENSCSEG00000007992	-	97	85.360	ENSTRUG00000005727	ef-1a	89	85.194	Takifugu_rubripes
ENSCSEG00000007992	-	99	85.437	ENSTRUG00000005066	-	89	85.437	Takifugu_rubripes
ENSCSEG00000007992	-	97	85.360	ENSTNIG00000002619	-	89	85.194	Tetraodon_nigroviridis
ENSCSEG00000007992	-	100	80.482	ENSTNIG00000002617	-	87	80.482	Tetraodon_nigroviridis
ENSCSEG00000007992	-	97	85.856	ENSXCOG00000001542	-	89	85.680	Xiphophorus_couchianus