EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000008109 (Gene tree)
Gene ID: 103381036
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 8230 bases
Position: chr1:15182952-15191181
Accession: 103381036
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000012547	RRM_1	PF00076.22	3.3e-33	1	2
ENSCSEP00000012547	RRM_1	PF00076.22	3.3e-33	2	2
ENSCSEP00000012547	RRM_3	PF08777.11	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000012697	-	4724	XM_008313202	ENSCSEP00000012547	313 (aa)	XP_008311424	UPI000497994F

Gene Model

Click here to download ENSCSEG00000008109's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG
csem05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000008109's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000008109	srsf5a	68	57.708	ENSCSEG00000003801	srsf5b	64	70.312
ENSCSEG00000008109	srsf5a	77	52.282	ENSCSEG00000010058	srsf4	74	62.222
ENSCSEG00000008109	srsf5a	58	43.011	ENSCSEG00000014272	-	67	43.548
ENSCSEG00000008109	srsf5a	58	50.000	ENSCSEG00000009973	-	69	50.000
ENSCSEG00000008109	srsf5a	62	41.667	ENSCSEG00000015663	srsf9	74	39.706

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000008109	srsf5a	77	89.627	ENSAPOG00000017395	srsf5a	79	89.300	Acanthochromis_polyacanthus
ENSCSEG00000008109	srsf5a	64	91.500	ENSACIG00000011892	srsf5a	96	90.000	Amphilophus_citrinellus
ENSCSEG00000008109	srsf5a	77	85.714	ENSAOCG00000014967	srsf5a	81	87.854	Amphiprion_ocellaris
ENSCSEG00000008109	srsf5a	77	85.714	ENSAPEG00000009297	srsf5a	81	87.854	Amphiprion_percula
ENSCSEG00000008109	srsf5a	78	92.593	ENSATEG00000000198	srsf5a	83	92.593	Anabas_testudineus
ENSCSEG00000008109	srsf5a	62	73.846	ENSAPLG00000002469	-	70	72.821	Anas_platyrhynchos
ENSCSEG00000008109	srsf5a	62	75.130	ENSACAG00000029015	-	68	73.196	Anolis_carolinensis
ENSCSEG00000008109	srsf5a	77	93.776	ENSACLG00000027166	srsf5a	81	93.827	Astatotilapia_calliptera
ENSCSEG00000008109	srsf5a	62	82.412	ENSAMXG00000030476	srsf5a	67	84.456	Astyanax_mexicanus
ENSCSEG00000008109	srsf5a	62	77.320	ENSCPBG00000021518	-	70	77.320	Chrysemys_picta_bellii
ENSCSEG00000008109	srsf5a	62	58.673	ENSCSAVG00000011376	-	78	57.711	Ciona_savignyi
ENSCSEG00000008109	srsf5a	83	69.811	ENSCVAG00000016982	srsf5a	96	84.328	Cyprinodon_variegatus
ENSCSEG00000008109	srsf5a	80	77.395	ENSDARG00000029818	srsf5a	100	80.282	Danio_rerio
ENSCSEG00000008109	srsf5a	62	74.879	ENSELUG00000020439	srsf5a	62	80.829	Esox_lucius
ENSCSEG00000008109	srsf5a	62	73.575	ENSFALG00000005098	-	64	70.984	Ficedula_albicollis
ENSCSEG00000008109	srsf5a	78	82.946	ENSFHEG00000003955	srsf5a	97	81.379	Fundulus_heteroclitus
ENSCSEG00000008109	srsf5a	62	83.938	ENSGMOG00000000869	srsf5a	94	83.938	Gadus_morhua
ENSCSEG00000008109	srsf5a	64	71.000	ENSGALG00000033259	SRSF5A	63	72.021	Gallus_gallus
ENSCSEG00000008109	srsf5a	79	72.332	ENSGAFG00000018237	srsf5a	74	62.400	Gambusia_affinis
ENSCSEG00000008109	srsf5a	62	87.565	ENSGACG00000011761	srsf5a	70	87.565	Gasterosteus_aculeatus
ENSCSEG00000008109	srsf5a	62	77.320	ENSGAGG00000007312	-	70	77.320	Gopherus_agassizii
ENSCSEG00000008109	srsf5a	77	93.776	ENSHBUG00000014048	srsf5a	81	93.827	Haplochromis_burtoni
ENSCSEG00000008109	srsf5a	62	87.565	ENSHCOG00000017557	srsf5a	62	89.637	Hippocampus_comes
ENSCSEG00000008109	srsf5a	82	68.750	ENSIPUG00000003439	srsf5a	69	84.974	Ictalurus_punctatus
ENSCSEG00000008109	srsf5a	62	82.902	ENSKMAG00000014937	srsf5a	58	85.492	Kryptolebias_marmoratus
ENSCSEG00000008109	srsf5a	62	91.371	ENSLBEG00000017153	srsf5a	74	92.386	Labrus_bergylta
ENSCSEG00000008109	srsf5a	62	78.756	ENSLACG00000017874	-	70	78.756	Latimeria_chalumnae
ENSCSEG00000008109	srsf5a	96	58.497	ENSLOCG00000014075	srsf5a	61	82.383	Lepisosteus_oculatus
ENSCSEG00000008109	srsf5a	100	80.511	ENSMAMG00000000192	srsf5a	83	86.008	Mastacembelus_armatus
ENSCSEG00000008109	srsf5a	77	93.361	ENSMZEG00005010485	srsf5a	81	93.416	Maylandia_zebra
ENSCSEG00000008109	srsf5a	64	72.059	ENSMGAG00000011888	-	96	72.000	Meleagris_gallopavo
ENSCSEG00000008109	srsf5a	78	87.243	ENSMMOG00000009793	srsf5a	78	87.654	Mola_mola
ENSCSEG00000008109	srsf5a	77	80.579	ENSMALG00000021194	srsf5a	79	79.339	Monopterus_albus
ENSCSEG00000008109	srsf5a	77	92.946	ENSNBRG00000000771	srsf5a	81	93.004	Neolamprologus_brichardi
ENSCSEG00000008109	srsf5a	77	92.946	ENSONIG00000019583	srsf5a	81	93.004	Oreochromis_niloticus
ENSCSEG00000008109	srsf5a	77	75.519	ENSORLG00000009268	srsf5a	84	84.362	Oryzias_latipes
ENSCSEG00000008109	srsf5a	77	75.519	ENSORLG00020003281	srsf5	84	84.362	Oryzias_latipes_hni
ENSCSEG00000008109	srsf5a	77	75.519	ENSORLG00015023075	srsf5	84	84.362	Oryzias_latipes_hsok
ENSCSEG00000008109	srsf5a	77	74.167	ENSOMEG00000000628	srsf5a	84	84.362	Oryzias_melastigma
ENSCSEG00000008109	srsf5a	95	59.683	ENSPKIG00000002054	srsf5a	68	83.938	Paramormyrops_kingsleyae
ENSCSEG00000008109	srsf5a	62	76.804	ENSPSIG00000008238	-	69	73.196	Pelodiscus_sinensis
ENSCSEG00000008109	srsf5a	79	65.882	ENSPMGG00000020125	srsf5a	72	69.721	Periophthalmus_magnuspinnatus
ENSCSEG00000008109	srsf5a	79	82.879	ENSPFOG00000022993	srsf5a	79	83.465	Poecilia_formosa
ENSCSEG00000008109	srsf5a	78	82.812	ENSPLAG00000005508	srsf5a	78	83.399	Poecilia_latipinna
ENSCSEG00000008109	srsf5a	79	83.268	ENSPMEG00000016339	srsf5a	79	83.858	Poecilia_mexicana
ENSCSEG00000008109	srsf5a	79	83.268	ENSPREG00000018091	srsf5a	80	83.465	Poecilia_reticulata
ENSCSEG00000008109	srsf5a	77	93.361	ENSPNYG00000021245	srsf5a	81	93.416	Pundamilia_nyererei
ENSCSEG00000008109	srsf5a	62	82.323	ENSPNAG00000021333	srsf5a	66	83.420	Pygocentrus_nattereri
ENSCSEG00000008109	srsf5a	62	81.000	ENSSFOG00015008377	srsf5	86	74.400	Scleropages_formosus
ENSCSEG00000008109	srsf5a	100	81.538	ENSSMAG00000010899	srsf5a	83	89.723	Scophthalmus_maximus
ENSCSEG00000008109	srsf5a	78	88.889	ENSSDUG00000006103	srsf5a	81	89.300	Seriola_dumerili
ENSCSEG00000008109	srsf5a	78	89.300	ENSSLDG00000004146	srsf5a	80	89.712	Seriola_lalandi_dorsalis
ENSCSEG00000008109	srsf5a	62	72.680	ENSSPUG00000002052	-	68	71.649	Sphenodon_punctatus
ENSCSEG00000008109	srsf5a	77	88.797	ENSSPAG00000002821	srsf5a	81	88.889	Stegastes_partitus
ENSCSEG00000008109	srsf5a	62	73.711	ENSTGUG00000011492	-	68	70.984	Taeniopygia_guttata
ENSCSEG00000008109	srsf5a	77	91.736	ENSTRUG00000022908	srsf5a	82	91.770	Takifugu_rubripes
ENSCSEG00000008109	srsf5a	85	66.791	ENSXETG00000017937	srsf5a	72	77.835	Xenopus_tropicalis
ENSCSEG00000008109	srsf5a	79	84.861	ENSXCOG00000015338	srsf5a	79	86.290	Xiphophorus_couchianus
ENSCSEG00000008109	srsf5a	79	84.706	ENSXMAG00000012823	srsf5a	80	84.921	Xiphophorus_maculatus