EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000008319 (Gene tree)
Gene ID: 103396910
Gene Symbol: lsm1 (1 of many)
Alias: zgc:101136
Full Name: U6 snRNA-associated Sm-like protein LSm1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 2188 bases
Position: chrW:1992648-1994835
Accession: 103396910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000012874	LSM	PF01423.22	3.3e-14	1	1
ENSCSEP00000012865	LSM	PF01423.22	6.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000013021	-	1152	XM_008335153	ENSCSEP00000012865	184 (aa)	XP_008333375	UPI0004970549
ENSCSET00000013030	-	965	XM_008335155	ENSCSEP00000012874	145 (aa)	XP_008333377	UPI00049825E3

Gene Model

Click here to download ENSCSEG00000008319's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000008319's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000008319	lsm1	100	97.241	ENSCSEG00000010570	lsm1	100	97.241

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000008319	lsm1	92	82.707	ENSG00000175324	LSM1	100	82.707	Homo_sapiens
ENSCSEG00000008319	lsm1	92	95.489	ENSAPOG00000010833	lsm1	100	95.489	Acanthochromis_polyacanthus
ENSCSEG00000008319	lsm1	92	82.707	ENSAMEG00000011141	LSM1	100	82.707	Ailuropoda_melanoleuca
ENSCSEG00000008319	lsm1	53	98.701	ENSACIG00000019593	lsm1	64	98.701	Amphilophus_citrinellus
ENSCSEG00000008319	lsm1	92	95.489	ENSAOCG00000017997	-	100	95.489	Amphiprion_ocellaris
ENSCSEG00000008319	lsm1	92	95.489	ENSAOCG00000017096	lsm1	100	95.489	Amphiprion_ocellaris
ENSCSEG00000008319	lsm1	92	95.489	ENSAPEG00000011669	lsm1	100	95.489	Amphiprion_percula
ENSCSEG00000008319	lsm1	92	96.992	ENSATEG00000022266	lsm1	100	96.992	Anabas_testudineus
ENSCSEG00000008319	lsm1	92	82.707	ENSANAG00000027785	LSM1	100	82.707	Aotus_nancymaae
ENSCSEG00000008319	lsm1	92	96.241	ENSACLG00000011400	lsm1	100	96.241	Astatotilapia_calliptera
ENSCSEG00000008319	lsm1	92	81.955	ENSAMXG00000005441	lsm1	100	81.955	Astyanax_mexicanus
ENSCSEG00000008319	lsm1	92	81.955	ENSBTAG00000001612	LSM1	100	81.955	Bos_taurus
ENSCSEG00000008319	lsm1	80	50.000	WBGene00003076	lsm-1	90	50.000	Caenorhabditis_elegans
ENSCSEG00000008319	lsm1	92	81.955	ENSCJAG00000048015	LSM1	100	81.955	Callithrix_jacchus
ENSCSEG00000008319	lsm1	92	82.707	ENSCAFG00000006113	LSM1	100	82.707	Canis_familiaris
ENSCSEG00000008319	lsm1	92	82.707	ENSCAFG00020001822	LSM1	100	82.707	Canis_lupus_dingo
ENSCSEG00000008319	lsm1	92	82.707	ENSCHIG00000013194	LSM1	100	82.707	Capra_hircus
ENSCSEG00000008319	lsm1	92	82.707	ENSTSYG00000010394	LSM1	100	82.707	Carlito_syrichta
ENSCSEG00000008319	lsm1	92	82.707	ENSCPOG00000032671	LSM1	100	82.707	Cavia_porcellus
ENSCSEG00000008319	lsm1	92	82.707	ENSCCAG00000037171	LSM1	100	82.707	Cebus_capucinus
ENSCSEG00000008319	lsm1	92	82.707	ENSCATG00000020377	LSM1	100	82.707	Cercocebus_atys
ENSCSEG00000008319	lsm1	92	81.203	ENSCLAG00000001137	LSM1	100	81.203	Chinchilla_lanigera
ENSCSEG00000008319	lsm1	92	82.707	ENSCSAG00000015485	LSM1	100	82.707	Chlorocebus_sabaeus
ENSCSEG00000008319	lsm1	92	83.459	ENSCHOG00000006030	LSM1	100	83.459	Choloepus_hoffmanni
ENSCSEG00000008319	lsm1	88	78.740	ENSCPBG00000006569	LSM1	86	78.740	Chrysemys_picta_bellii
ENSCSEG00000008319	lsm1	90	62.121	ENSCING00000013536	-	100	62.121	Ciona_intestinalis
ENSCSEG00000008319	lsm1	92	82.707	ENSCANG00000019173	LSM1	100	82.707	Colobus_angolensis_palliatus
ENSCSEG00000008319	lsm1	72	72.727	ENSCGRG00001002259	-	96	72.727	Cricetulus_griseus_chok1gshd
ENSCSEG00000008319	lsm1	92	81.955	ENSCGRG00001024560	-	100	81.955	Cricetulus_griseus_chok1gshd
ENSCSEG00000008319	lsm1	72	72.727	ENSCGRG00000013603	-	96	72.727	Cricetulus_griseus_crigri
ENSCSEG00000008319	lsm1	92	81.955	ENSCGRG00000006554	-	100	81.955	Cricetulus_griseus_crigri
ENSCSEG00000008319	lsm1	92	95.489	ENSCVAG00000003871	lsm1	100	95.489	Cyprinodon_variegatus
ENSCSEG00000008319	lsm1	92	81.203	ENSDARG00000043177	lsm1	100	81.203	Danio_rerio
ENSCSEG00000008319	lsm1	91	78.030	ENSDNOG00000030989	-	99	78.030	Dasypus_novemcinctus
ENSCSEG00000008319	lsm1	82	66.387	ENSDNOG00000046620	-	100	66.387	Dasypus_novemcinctus
ENSCSEG00000008319	lsm1	92	82.707	ENSDNOG00000046387	-	100	82.707	Dasypus_novemcinctus
ENSCSEG00000008319	lsm1	92	81.955	ENSDNOG00000032911	-	100	81.955	Dasypus_novemcinctus
ENSCSEG00000008319	lsm1	92	82.707	ENSDORG00000028172	Lsm1	100	82.707	Dipodomys_ordii
ENSCSEG00000008319	lsm1	86	58.871	FBgn0261067	LSm1	91	58.871	Drosophila_melanogaster
ENSCSEG00000008319	lsm1	92	81.955	ENSEASG00005016677	LSM1	100	81.955	Equus_asinus_asinus
ENSCSEG00000008319	lsm1	92	81.955	ENSECAG00000010461	LSM1	100	81.955	Equus_caballus
ENSCSEG00000008319	lsm1	53	90.909	ENSEEUG00000015181	LSM1	78	90.909	Erinaceus_europaeus
ENSCSEG00000008319	lsm1	92	92.481	ENSELUG00000002322	lsm1	100	92.481	Esox_lucius
ENSCSEG00000008319	lsm1	92	76.692	ENSELUG00000023374	lsm1	100	76.692	Esox_lucius
ENSCSEG00000008319	lsm1	92	82.707	ENSFCAG00000039335	LSM1	100	82.707	Felis_catus
ENSCSEG00000008319	lsm1	81	83.898	ENSFALG00000006723	LSM1	100	83.898	Ficedula_albicollis
ENSCSEG00000008319	lsm1	92	82.707	ENSFDAG00000007658	LSM1	100	82.707	Fukomys_damarensis
ENSCSEG00000008319	lsm1	92	95.489	ENSFHEG00000009556	lsm1	100	95.489	Fundulus_heteroclitus
ENSCSEG00000008319	lsm1	92	94.030	ENSGMOG00000016651	lsm1	99	94.030	Gadus_morhua
ENSCSEG00000008319	lsm1	92	82.707	ENSGALG00000003245	LSM1	100	82.707	Gallus_gallus
ENSCSEG00000008319	lsm1	92	95.489	ENSGAFG00000011355	lsm1	100	95.489	Gambusia_affinis
ENSCSEG00000008319	lsm1	92	94.776	ENSGACG00000011763	lsm1	99	94.776	Gasterosteus_aculeatus
ENSCSEG00000008319	lsm1	92	84.211	ENSGAGG00000024065	LSM1	100	84.211	Gopherus_agassizii
ENSCSEG00000008319	lsm1	92	82.707	ENSGGOG00000022658	LSM1	100	82.707	Gorilla_gorilla
ENSCSEG00000008319	lsm1	92	96.241	ENSHBUG00000010897	lsm1	100	96.241	Haplochromis_burtoni
ENSCSEG00000008319	lsm1	92	67.669	ENSHGLG00000017574	-	100	67.669	Heterocephalus_glaber_female
ENSCSEG00000008319	lsm1	92	82.707	ENSHGLG00000005711	LSM1	100	82.707	Heterocephalus_glaber_female
ENSCSEG00000008319	lsm1	92	67.669	ENSHGLG00100012152	-	100	67.669	Heterocephalus_glaber_male
ENSCSEG00000008319	lsm1	92	82.707	ENSHGLG00100017660	LSM1	100	82.707	Heterocephalus_glaber_male
ENSCSEG00000008319	lsm1	92	94.737	ENSHCOG00000017233	lsm1	100	94.737	Hippocampus_comes
ENSCSEG00000008319	lsm1	92	81.203	ENSIPUG00000002312	LSM1	100	81.203	Ictalurus_punctatus
ENSCSEG00000008319	lsm1	57	86.747	ENSSTOG00000026870	LSM1	100	86.747	Ictidomys_tridecemlineatus
ENSCSEG00000008319	lsm1	92	81.955	ENSJJAG00000014605	-	100	81.955	Jaculus_jaculus
ENSCSEG00000008319	lsm1	92	96.992	ENSKMAG00000003016	lsm1	100	96.992	Kryptolebias_marmoratus
ENSCSEG00000008319	lsm1	92	96.241	ENSLBEG00000022352	lsm1	100	96.241	Labrus_bergylta
ENSCSEG00000008319	lsm1	83	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSCSEG00000008319	lsm1	92	84.962	ENSLOCG00000015149	lsm1	100	84.962	Lepisosteus_oculatus
ENSCSEG00000008319	lsm1	92	82.707	ENSLAFG00000003534	LSM1	100	82.707	Loxodonta_africana
ENSCSEG00000008319	lsm1	92	82.707	ENSMFAG00000032661	LSM1	100	82.707	Macaca_fascicularis
ENSCSEG00000008319	lsm1	92	82.707	ENSMLEG00000034535	LSM1	100	82.707	Mandrillus_leucophaeus
ENSCSEG00000008319	lsm1	92	96.241	ENSMAMG00000007464	lsm1	100	96.241	Mastacembelus_armatus
ENSCSEG00000008319	lsm1	92	96.241	ENSMZEG00005010321	lsm1	100	96.241	Maylandia_zebra
ENSCSEG00000008319	lsm1	92	82.707	ENSMGAG00000002125	LSM1	100	82.707	Meleagris_gallopavo
ENSCSEG00000008319	lsm1	92	82.707	ENSMICG00000030726	LSM1	100	82.707	Microcebus_murinus
ENSCSEG00000008319	lsm1	92	81.955	ENSMOCG00000022817	Lsm1	100	81.955	Microtus_ochrogaster
ENSCSEG00000008319	lsm1	92	95.489	ENSMMOG00000015466	lsm1	100	95.489	Mola_mola
ENSCSEG00000008319	lsm1	92	83.459	ENSMODG00000010732	-	100	83.459	Monodelphis_domestica
ENSCSEG00000008319	lsm1	53	98.701	ENSMALG00000001478	lsm1	82	98.701	Monopterus_albus
ENSCSEG00000008319	lsm1	92	82.707	MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	Mus_caroli
ENSCSEG00000008319	lsm1	92	82.707	ENSMUSG00000037296	Lsm1	100	82.707	Mus_musculus
ENSCSEG00000008319	lsm1	92	82.707	MGP_PahariEiJ_G0021400	Lsm1	100	82.707	Mus_pahari
ENSCSEG00000008319	lsm1	92	82.707	MGP_SPRETEiJ_G0032049	Lsm1	100	82.707	Mus_spretus
ENSCSEG00000008319	lsm1	92	83.459	ENSMPUG00000009883	LSM1	100	83.459	Mustela_putorius_furo
ENSCSEG00000008319	lsm1	92	82.707	ENSMLUG00000003734	LSM1	100	82.707	Myotis_lucifugus
ENSCSEG00000008319	lsm1	92	81.955	ENSNGAG00000003753	Lsm1	100	81.955	Nannospalax_galili
ENSCSEG00000008319	lsm1	53	98.701	ENSNBRG00000017370	lsm1	66	98.701	Neolamprologus_brichardi
ENSCSEG00000008319	lsm1	92	82.707	ENSNLEG00000029390	LSM1	100	82.707	Nomascus_leucogenys
ENSCSEG00000008319	lsm1	92	83.459	ENSMEUG00000014077	LSM1	100	83.459	Notamacropus_eugenii
ENSCSEG00000008319	lsm1	81	79.487	ENSOPRG00000000333	LSM1	100	79.487	Ochotona_princeps
ENSCSEG00000008319	lsm1	92	82.707	ENSODEG00000004834	LSM1	100	82.707	Octodon_degus
ENSCSEG00000008319	lsm1	92	96.241	ENSONIG00000010782	lsm1	100	96.241	Oreochromis_niloticus
ENSCSEG00000008319	lsm1	92	83.459	ENSOANG00000003256	LSM1	100	83.459	Ornithorhynchus_anatinus
ENSCSEG00000008319	lsm1	92	82.707	ENSOCUG00000015399	LSM1	100	82.707	Oryctolagus_cuniculus
ENSCSEG00000008319	lsm1	92	95.489	ENSORLG00000030288	lsm1	100	95.489	Oryzias_latipes
ENSCSEG00000008319	lsm1	92	95.489	ENSORLG00020003941	lsm1	100	95.489	Oryzias_latipes_hni
ENSCSEG00000008319	lsm1	92	93.985	ENSORLG00020006213	-	86	93.985	Oryzias_latipes_hni
ENSCSEG00000008319	lsm1	92	95.489	ENSORLG00015018350	lsm1	100	95.489	Oryzias_latipes_hsok
ENSCSEG00000008319	lsm1	92	96.992	ENSOMEG00000012454	lsm1	100	96.992	Oryzias_melastigma
ENSCSEG00000008319	lsm1	92	82.707	ENSOGAG00000015161	LSM1	100	82.707	Otolemur_garnettii
ENSCSEG00000008319	lsm1	92	82.707	ENSOARG00000001317	LSM1	100	82.707	Ovis_aries
ENSCSEG00000008319	lsm1	92	82.707	ENSPPAG00000032279	LSM1	100	82.707	Pan_paniscus
ENSCSEG00000008319	lsm1	92	82.707	ENSPPRG00000014172	-	100	82.707	Panthera_pardus
ENSCSEG00000008319	lsm1	92	82.707	ENSPTIG00000010289	LSM1	100	82.707	Panthera_tigris_altaica
ENSCSEG00000008319	lsm1	92	82.707	ENSPTRG00000020169	LSM1	100	82.707	Pan_troglodytes
ENSCSEG00000008319	lsm1	92	82.707	ENSPANG00000008814	LSM1	100	82.707	Papio_anubis
ENSCSEG00000008319	lsm1	92	85.714	ENSPKIG00000001839	lsm1	100	85.714	Paramormyrops_kingsleyae
ENSCSEG00000008319	lsm1	92	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSCSEG00000008319	lsm1	90	78.462	ENSPSIG00000012563	LSM1	99	78.462	Pelodiscus_sinensis
ENSCSEG00000008319	lsm1	53	98.701	ENSPMGG00000022999	lsm1	73	98.701	Periophthalmus_magnuspinnatus
ENSCSEG00000008319	lsm1	78	72.566	ENSPMAG00000002671	lsm1	100	72.566	Petromyzon_marinus
ENSCSEG00000008319	lsm1	92	83.459	ENSPCIG00000008880	LSM1	100	83.459	Phascolarctos_cinereus
ENSCSEG00000008319	lsm1	92	95.489	ENSPFOG00000016029	lsm1	100	95.489	Poecilia_formosa
ENSCSEG00000008319	lsm1	92	95.489	ENSPLAG00000007879	lsm1	100	95.489	Poecilia_latipinna
ENSCSEG00000008319	lsm1	92	95.489	ENSPMEG00000023550	lsm1	100	95.489	Poecilia_mexicana
ENSCSEG00000008319	lsm1	92	95.489	ENSPREG00000009574	lsm1	100	95.489	Poecilia_reticulata
ENSCSEG00000008319	lsm1	92	82.707	ENSPPYG00000018521	LSM1	100	82.707	Pongo_abelii
ENSCSEG00000008319	lsm1	92	82.707	ENSPCOG00000020901	-	100	82.707	Propithecus_coquereli
ENSCSEG00000008319	lsm1	92	82.707	ENSPVAG00000006016	LSM1	100	82.707	Pteropus_vampyrus
ENSCSEG00000008319	lsm1	92	96.241	ENSPNYG00000018067	lsm1	100	96.241	Pundamilia_nyererei
ENSCSEG00000008319	lsm1	92	81.203	ENSPNAG00000013707	lsm1	100	81.203	Pygocentrus_nattereri
ENSCSEG00000008319	lsm1	92	81.203	ENSRNOG00000015375	Lsm1	100	81.203	Rattus_norvegicus
ENSCSEG00000008319	lsm1	92	82.707	ENSRBIG00000027449	LSM1	100	82.707	Rhinopithecus_bieti
ENSCSEG00000008319	lsm1	92	82.707	ENSRROG00000036074	LSM1	100	82.707	Rhinopithecus_roxellana
ENSCSEG00000008319	lsm1	74	41.228	YJL124C	LSM1	66	41.228	Saccharomyces_cerevisiae
ENSCSEG00000008319	lsm1	92	83.459	ENSSHAG00000017260	LSM1	100	83.459	Sarcophilus_harrisii
ENSCSEG00000008319	lsm1	92	84.962	ENSSFOG00015019528	lsm1	100	84.962	Scleropages_formosus
ENSCSEG00000008319	lsm1	92	96.992	ENSSMAG00000004930	lsm1	100	96.992	Scophthalmus_maximus
ENSCSEG00000008319	lsm1	92	96.992	ENSSDUG00000021823	lsm1	100	96.992	Seriola_dumerili
ENSCSEG00000008319	lsm1	92	96.992	ENSSLDG00000012154	lsm1	100	96.992	Seriola_lalandi_dorsalis
ENSCSEG00000008319	lsm1	92	84.211	ENSSPUG00000014878	LSM1	100	84.211	Sphenodon_punctatus
ENSCSEG00000008319	lsm1	92	96.241	ENSSPAG00000020548	lsm1	100	96.241	Stegastes_partitus
ENSCSEG00000008319	lsm1	92	82.707	ENSSSCG00000039058	LSM1	100	82.707	Sus_scrofa
ENSCSEG00000008319	lsm1	92	84.962	ENSTGUG00000004793	LSM1	100	84.962	Taeniopygia_guttata
ENSCSEG00000008319	lsm1	92	93.233	ENSTRUG00000025239	lsm1	100	93.233	Takifugu_rubripes
ENSCSEG00000008319	lsm1	92	90.977	ENSTNIG00000004055	lsm1	100	90.977	Tetraodon_nigroviridis
ENSCSEG00000008319	lsm1	81	81.197	ENSTBEG00000015884	LSM1	100	81.197	Tupaia_belangeri
ENSCSEG00000008319	lsm1	92	82.707	ENSTTRG00000004482	LSM1	100	82.707	Tursiops_truncatus
ENSCSEG00000008319	lsm1	92	82.707	ENSUAMG00000004103	LSM1	100	82.707	Ursus_americanus
ENSCSEG00000008319	lsm1	92	82.707	ENSUMAG00000009132	LSM1	100	82.707	Ursus_maritimus
ENSCSEG00000008319	lsm1	53	89.610	ENSVPAG00000011593	LSM1	100	89.610	Vicugna_pacos
ENSCSEG00000008319	lsm1	92	82.707	ENSVVUG00000020191	LSM1	100	82.707	Vulpes_vulpes
ENSCSEG00000008319	lsm1	57	62.195	ENSVVUG00000014880	-	87	62.195	Vulpes_vulpes
ENSCSEG00000008319	lsm1	92	78.832	ENSXETG00000009004	lsm1	100	78.832	Xenopus_tropicalis
ENSCSEG00000008319	lsm1	92	96.241	ENSXCOG00000015631	lsm1	100	96.241	Xiphophorus_couchianus
ENSCSEG00000008319	lsm1	92	96.241	ENSXMAG00000026637	lsm1	100	96.241	Xiphophorus_maculatus