EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000008614 (Gene tree)
Gene ID: 103390956
Gene Symbol: clp1
Alias: fa28a12|wu:fa28a12
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 3296 bases
Position: chr15:10479488-10482783
Accession: 103390956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000013353	Clp1	PF06807.14	9.7e-29	1	1
ENSCSEP00000013345	Clp1	PF06807.14	1.1e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000013504	-	1688	XM_008327049	ENSCSEP00000013345	441 (aa)	XP_008325271	UPI00049548FC
ENSCSET00000013512	-	1586	-	ENSCSEP00000013353	407 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000008614's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000008614's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000008614	clp1	99	74.483	ENSG00000172409	CLP1	99	74.942	Homo_sapiens
ENSCSEG00000008614	clp1	100	92.063	ENSAPOG00000008242	clp1	100	92.063	Acanthochromis_polyacanthus
ENSCSEG00000008614	clp1	99	74.023	ENSAMEG00000014551	CLP1	99	74.023	Ailuropoda_melanoleuca
ENSCSEG00000008614	clp1	100	92.063	ENSACIG00000006310	clp1	99	92.063	Amphilophus_citrinellus
ENSCSEG00000008614	clp1	100	92.290	ENSAOCG00000010681	clp1	100	92.290	Amphiprion_ocellaris
ENSCSEG00000008614	clp1	100	92.290	ENSAPEG00000012165	clp1	100	92.290	Amphiprion_percula
ENSCSEG00000008614	clp1	100	94.785	ENSATEG00000012374	clp1	100	94.785	Anabas_testudineus
ENSCSEG00000008614	clp1	98	74.246	ENSACAG00000007139	CLP1	99	74.246	Anolis_carolinensis
ENSCSEG00000008614	clp1	99	74.483	ENSANAG00000034935	CLP1	99	74.942	Aotus_nancymaae
ENSCSEG00000008614	clp1	100	93.197	ENSACLG00000013573	clp1	100	93.197	Astatotilapia_calliptera
ENSCSEG00000008614	clp1	95	85.579	ENSAMXG00000014194	clp1	98	85.377	Astyanax_mexicanus
ENSCSEG00000008614	clp1	98	74.478	ENSBTAG00000006493	CLP1	99	74.478	Bos_taurus
ENSCSEG00000008614	clp1	95	47.754	WBGene00010304	clpf-1	97	47.754	Caenorhabditis_elegans
ENSCSEG00000008614	clp1	99	74.483	ENSCJAG00000008748	CLP1	99	74.942	Callithrix_jacchus
ENSCSEG00000008614	clp1	98	74.478	ENSCAFG00000007815	CLP1	99	74.478	Canis_familiaris
ENSCSEG00000008614	clp1	98	74.478	ENSCAFG00020000903	CLP1	99	74.478	Canis_lupus_dingo
ENSCSEG00000008614	clp1	98	74.478	ENSCHIG00000023497	CLP1	99	74.478	Capra_hircus
ENSCSEG00000008614	clp1	99	74.253	ENSTSYG00000006824	CLP1	99	74.253	Carlito_syrichta
ENSCSEG00000008614	clp1	96	75.472	ENSCAPG00000009703	CLP1	98	75.472	Cavia_aperea
ENSCSEG00000008614	clp1	96	75.472	ENSCPOG00000012554	CLP1	99	75.472	Cavia_porcellus
ENSCSEG00000008614	clp1	98	74.478	ENSCCAG00000031957	CLP1	99	74.478	Cebus_capucinus
ENSCSEG00000008614	clp1	100	73.469	ENSCATG00000044628	CLP1	99	74.942	Cercocebus_atys
ENSCSEG00000008614	clp1	98	74.710	ENSCLAG00000004094	CLP1	99	74.710	Chinchilla_lanigera
ENSCSEG00000008614	clp1	98	74.942	ENSCSAG00000005994	CLP1	99	74.942	Chlorocebus_sabaeus
ENSCSEG00000008614	clp1	98	74.710	ENSCPBG00000016843	CLP1	99	74.710	Chrysemys_picta_bellii
ENSCSEG00000008614	clp1	98	59.259	ENSCING00000003779	-	99	59.259	Ciona_intestinalis
ENSCSEG00000008614	clp1	96	61.848	ENSCSAVG00000003437	-	97	61.848	Ciona_savignyi
ENSCSEG00000008614	clp1	99	74.483	ENSCANG00000034335	CLP1	99	74.942	Colobus_angolensis_palliatus
ENSCSEG00000008614	clp1	98	74.014	ENSCGRG00001002227	CLP1	99	74.014	Cricetulus_griseus_chok1gshd
ENSCSEG00000008614	clp1	98	74.014	ENSCGRG00000004328	CLP1	99	74.014	Cricetulus_griseus_crigri
ENSCSEG00000008614	clp1	100	90.930	ENSCVAG00000020101	clp1	100	90.930	Cyprinodon_variegatus
ENSCSEG00000008614	clp1	95	86.493	ENSDARG00000063663	clp1	99	83.900	Danio_rerio
ENSCSEG00000008614	clp1	98	74.419	ENSDNOG00000042415	CLP1	89	74.419	Dasypus_novemcinctus
ENSCSEG00000008614	clp1	98	74.246	ENSDORG00000014685	Clp1	99	74.246	Dipodomys_ordii
ENSCSEG00000008614	clp1	95	54.545	FBgn0033842	cbc	97	54.545	Drosophila_melanogaster
ENSCSEG00000008614	clp1	98	74.710	ENSETEG00000003009	CLP1	99	74.710	Echinops_telfairi
ENSCSEG00000008614	clp1	98	64.733	ENSEBUG00000011648	clp1	99	64.733	Eptatretus_burgeri
ENSCSEG00000008614	clp1	98	74.942	ENSEASG00005002093	CLP1	99	74.942	Equus_asinus_asinus
ENSCSEG00000008614	clp1	99	74.483	ENSECAG00000011597	CLP1	99	74.942	Equus_caballus
ENSCSEG00000008614	clp1	99	73.455	ENSEEUG00000012771	CLP1	99	73.455	Erinaceus_europaeus
ENSCSEG00000008614	clp1	95	85.613	ENSELUG00000024048	clp1	100	83.184	Esox_lucius
ENSCSEG00000008614	clp1	99	74.023	ENSFCAG00000006633	CLP1	99	74.478	Felis_catus
ENSCSEG00000008614	clp1	98	74.710	ENSFALG00000011145	CLP1	99	74.710	Ficedula_albicollis
ENSCSEG00000008614	clp1	98	74.710	ENSFDAG00000000234	CLP1	99	74.710	Fukomys_damarensis
ENSCSEG00000008614	clp1	100	91.383	ENSFHEG00000014760	CLP1	100	91.383	Fundulus_heteroclitus
ENSCSEG00000008614	clp1	100	87.302	ENSGMOG00000019340	clp1	100	87.302	Gadus_morhua
ENSCSEG00000008614	clp1	98	74.478	ENSGALG00000007370	CLP1	99	74.478	Gallus_gallus
ENSCSEG00000008614	clp1	100	90.703	ENSGAFG00000003020	clp1	100	90.703	Gambusia_affinis
ENSCSEG00000008614	clp1	100	92.744	ENSGACG00000017832	clp1	100	92.744	Gasterosteus_aculeatus
ENSCSEG00000008614	clp1	98	74.710	ENSGAGG00000013279	CLP1	99	74.710	Gopherus_agassizii
ENSCSEG00000008614	clp1	99	74.483	ENSGGOG00000023006	CLP1	99	74.942	Gorilla_gorilla
ENSCSEG00000008614	clp1	100	93.424	ENSHBUG00000010436	clp1	100	93.424	Haplochromis_burtoni
ENSCSEG00000008614	clp1	98	74.710	ENSHGLG00000009914	CLP1	99	74.710	Heterocephalus_glaber_female
ENSCSEG00000008614	clp1	98	74.710	ENSHGLG00100006105	CLP1	99	74.710	Heterocephalus_glaber_male
ENSCSEG00000008614	clp1	100	90.930	ENSHCOG00000010072	clp1	100	90.930	Hippocampus_comes
ENSCSEG00000008614	clp1	95	86.052	ENSIPUG00000016238	clp1	99	82.405	Ictalurus_punctatus
ENSCSEG00000008614	clp1	98	74.710	ENSSTOG00000029257	CLP1	99	74.710	Ictidomys_tridecemlineatus
ENSCSEG00000008614	clp1	98	74.246	ENSJJAG00000023691	Clp1	99	74.246	Jaculus_jaculus
ENSCSEG00000008614	clp1	100	91.610	ENSKMAG00000011990	clp1	100	91.610	Kryptolebias_marmoratus
ENSCSEG00000008614	clp1	100	92.971	ENSLBEG00000010201	clp1	100	92.971	Labrus_bergylta
ENSCSEG00000008614	clp1	97	74.883	ENSLACG00000003160	CLP1	99	74.883	Latimeria_chalumnae
ENSCSEG00000008614	clp1	71	83.851	ENSLOCG00000008074	clp1	100	84.259	Lepisosteus_oculatus
ENSCSEG00000008614	clp1	98	74.478	ENSLAFG00000014907	CLP1	99	74.478	Loxodonta_africana
ENSCSEG00000008614	clp1	99	74.483	ENSMFAG00000046074	CLP1	99	74.942	Macaca_fascicularis
ENSCSEG00000008614	clp1	99	74.483	ENSMMUG00000038007	CLP1	99	74.483	Macaca_mulatta
ENSCSEG00000008614	clp1	98	74.942	ENSMNEG00000000259	CLP1	99	74.942	Macaca_nemestrina
ENSCSEG00000008614	clp1	99	74.483	ENSMLEG00000043556	CLP1	99	74.942	Mandrillus_leucophaeus
ENSCSEG00000008614	clp1	100	92.517	ENSMAMG00000002149	clp1	100	92.517	Mastacembelus_armatus
ENSCSEG00000008614	clp1	100	93.197	ENSMZEG00005002850	clp1	100	93.197	Maylandia_zebra
ENSCSEG00000008614	clp1	98	74.478	ENSMGAG00000009643	CLP1	99	74.478	Meleagris_gallopavo
ENSCSEG00000008614	clp1	98	73.782	ENSMAUG00000016261	Clp1	99	73.782	Mesocricetus_auratus
ENSCSEG00000008614	clp1	99	73.576	ENSMICG00000004895	CLP1	99	74.478	Microcebus_murinus
ENSCSEG00000008614	clp1	98	74.246	ENSMOCG00000005498	Clp1	99	74.246	Microtus_ochrogaster
ENSCSEG00000008614	clp1	100	90.249	ENSMMOG00000003229	clp1	100	90.249	Mola_mola
ENSCSEG00000008614	clp1	98	74.710	ENSMODG00000020107	-	99	74.710	Monodelphis_domestica
ENSCSEG00000008614	clp1	98	74.710	ENSMODG00000024148	-	99	74.710	Monodelphis_domestica
ENSCSEG00000008614	clp1	100	92.063	ENSMALG00000014239	clp1	100	92.063	Monopterus_albus
ENSCSEG00000008614	clp1	98	74.014	MGP_CAROLIEiJ_G0023726	Clp1	99	74.014	Mus_caroli
ENSCSEG00000008614	clp1	98	74.014	ENSMUSG00000027079	Clp1	99	74.014	Mus_musculus
ENSCSEG00000008614	clp1	98	73.782	MGP_PahariEiJ_G0025177	Clp1	99	73.782	Mus_pahari
ENSCSEG00000008614	clp1	98	74.014	MGP_SPRETEiJ_G0024646	Clp1	99	74.014	Mus_spretus
ENSCSEG00000008614	clp1	98	74.478	ENSMPUG00000000268	CLP1	99	74.478	Mustela_putorius_furo
ENSCSEG00000008614	clp1	96	75.708	ENSMLUG00000007904	CLP1	98	75.708	Myotis_lucifugus
ENSCSEG00000008614	clp1	98	74.246	ENSNGAG00000006165	Clp1	99	74.246	Nannospalax_galili
ENSCSEG00000008614	clp1	100	92.744	ENSNBRG00000005225	clp1	100	92.744	Neolamprologus_brichardi
ENSCSEG00000008614	clp1	80	70.196	ENSNLEG00000012809	-	99	70.196	Nomascus_leucogenys
ENSCSEG00000008614	clp1	98	74.478	ENSMEUG00000010949	CLP1	99	74.478	Notamacropus_eugenii
ENSCSEG00000008614	clp1	69	78.218	ENSOPRG00000007329	CLP1	100	78.218	Ochotona_princeps
ENSCSEG00000008614	clp1	98	74.710	ENSODEG00000011410	CLP1	99	74.710	Octodon_degus
ENSCSEG00000008614	clp1	100	93.197	ENSONIG00000005089	clp1	100	93.197	Oreochromis_niloticus
ENSCSEG00000008614	clp1	98	74.478	ENSOCUG00000007045	CLP1	99	74.478	Oryctolagus_cuniculus
ENSCSEG00000008614	clp1	100	92.517	ENSORLG00000003647	clp1	100	92.517	Oryzias_latipes
ENSCSEG00000008614	clp1	100	92.290	ENSORLG00020016676	clp1	100	92.290	Oryzias_latipes_hni
ENSCSEG00000008614	clp1	100	92.517	ENSORLG00015019484	clp1	100	92.517	Oryzias_latipes_hsok
ENSCSEG00000008614	clp1	100	92.517	ENSOMEG00000021303	clp1	100	92.517	Oryzias_melastigma
ENSCSEG00000008614	clp1	98	74.478	ENSOGAG00000004508	CLP1	99	74.478	Otolemur_garnettii
ENSCSEG00000008614	clp1	98	73.318	ENSOARG00000010145	CLP1	98	73.318	Ovis_aries
ENSCSEG00000008614	clp1	99	74.483	ENSPPAG00000041519	CLP1	99	74.942	Pan_paniscus
ENSCSEG00000008614	clp1	98	74.478	ENSPPRG00000006135	CLP1	99	74.478	Panthera_pardus
ENSCSEG00000008614	clp1	98	74.478	ENSPTIG00000015866	CLP1	99	74.478	Panthera_tigris_altaica
ENSCSEG00000008614	clp1	98	74.942	ENSPTRG00000047318	CLP1	99	74.942	Pan_troglodytes
ENSCSEG00000008614	clp1	99	74.483	ENSPANG00000017078	CLP1	98	74.483	Papio_anubis
ENSCSEG00000008614	clp1	100	82.921	ENSPKIG00000007697	clp1	100	83.146	Paramormyrops_kingsleyae
ENSCSEG00000008614	clp1	93	71.707	ENSPSIG00000005468	CLP1	100	71.707	Pelodiscus_sinensis
ENSCSEG00000008614	clp1	100	90.476	ENSPMGG00000012171	clp1	100	90.476	Periophthalmus_magnuspinnatus
ENSCSEG00000008614	clp1	98	74.246	ENSPEMG00000011213	-	99	74.246	Peromyscus_maniculatus_bairdii
ENSCSEG00000008614	clp1	95	67.062	ENSPMAG00000006707	clp1	98	67.062	Petromyzon_marinus
ENSCSEG00000008614	clp1	98	74.942	ENSPCIG00000011899	CLP1	99	74.942	Phascolarctos_cinereus
ENSCSEG00000008614	clp1	100	90.930	ENSPFOG00000008169	clp1	100	90.930	Poecilia_formosa
ENSCSEG00000008614	clp1	100	90.930	ENSPLAG00000022388	clp1	100	90.930	Poecilia_latipinna
ENSCSEG00000008614	clp1	100	90.930	ENSPMEG00000021088	clp1	100	90.930	Poecilia_mexicana
ENSCSEG00000008614	clp1	100	90.703	ENSPREG00000017802	clp1	100	90.703	Poecilia_reticulata
ENSCSEG00000008614	clp1	52	74.672	ENSPPYG00000003266	-	100	74.672	Pongo_abelii
ENSCSEG00000008614	clp1	99	74.023	ENSPCOG00000000360	CLP1	99	74.023	Propithecus_coquereli
ENSCSEG00000008614	clp1	98	74.478	ENSPVAG00000016270	CLP1	99	74.478	Pteropus_vampyrus
ENSCSEG00000008614	clp1	100	93.424	ENSPNYG00000017274	clp1	99	93.424	Pundamilia_nyererei
ENSCSEG00000008614	clp1	95	86.998	ENSPNAG00000026460	clp1	100	83.705	Pygocentrus_nattereri
ENSCSEG00000008614	clp1	98	74.014	ENSRNOG00000007416	Clp1	99	74.014	Rattus_norvegicus
ENSCSEG00000008614	clp1	98	74.942	ENSRBIG00000018191	CLP1	99	74.942	Rhinopithecus_bieti
ENSCSEG00000008614	clp1	99	74.483	ENSRROG00000039265	CLP1	99	74.942	Rhinopithecus_roxellana
ENSCSEG00000008614	clp1	98	74.942	ENSSBOG00000032517	-	99	74.942	Saimiri_boliviensis_boliviensis
ENSCSEG00000008614	clp1	94	61.353	ENSSBOG00000010558	-	93	61.353	Saimiri_boliviensis_boliviensis
ENSCSEG00000008614	clp1	98	74.710	ENSSHAG00000015695	CLP1	99	74.710	Sarcophilus_harrisii
ENSCSEG00000008614	clp1	100	82.119	ENSSFOG00015000628	clp1	100	82.119	Scleropages_formosus
ENSCSEG00000008614	clp1	100	94.558	ENSSMAG00000019423	clp1	99	94.558	Scophthalmus_maximus
ENSCSEG00000008614	clp1	100	93.878	ENSSDUG00000014495	clp1	100	93.878	Seriola_dumerili
ENSCSEG00000008614	clp1	100	94.104	ENSSLDG00000000937	clp1	100	94.104	Seriola_lalandi_dorsalis
ENSCSEG00000008614	clp1	52	74.561	ENSSARG00000002459	CLP1	100	74.561	Sorex_araneus
ENSCSEG00000008614	clp1	98	74.246	ENSSPUG00000016811	CLP1	99	74.246	Sphenodon_punctatus
ENSCSEG00000008614	clp1	100	92.063	ENSSPAG00000016052	clp1	100	92.063	Stegastes_partitus
ENSCSEG00000008614	clp1	98	74.478	ENSSSCG00000031442	CLP1	99	74.478	Sus_scrofa
ENSCSEG00000008614	clp1	98	74.478	ENSTGUG00000007002	CLP1	99	74.478	Taeniopygia_guttata
ENSCSEG00000008614	clp1	100	88.435	ENSTRUG00000012602	clp1	100	88.435	Takifugu_rubripes
ENSCSEG00000008614	clp1	100	87.528	ENSTNIG00000013125	clp1	100	87.528	Tetraodon_nigroviridis
ENSCSEG00000008614	clp1	98	74.246	ENSTBEG00000009975	CLP1	99	74.246	Tupaia_belangeri
ENSCSEG00000008614	clp1	98	74.478	ENSTTRG00000002096	CLP1	99	74.478	Tursiops_truncatus
ENSCSEG00000008614	clp1	98	74.478	ENSUAMG00000011388	CLP1	99	74.478	Ursus_americanus
ENSCSEG00000008614	clp1	98	74.478	ENSUMAG00000018317	CLP1	99	74.478	Ursus_maritimus
ENSCSEG00000008614	clp1	100	73.243	ENSVVUG00000017138	CLP1	99	73.243	Vulpes_vulpes
ENSCSEG00000008614	clp1	95	72.922	ENSXETG00000007088	clp1	95	73.159	Xenopus_tropicalis
ENSCSEG00000008614	clp1	100	90.930	ENSXCOG00000002287	clp1	100	90.930	Xiphophorus_couchianus
ENSCSEG00000008614	clp1	100	90.930	ENSXMAG00000009783	clp1	100	90.930	Xiphophorus_maculatus