EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000008661 (Gene tree)
Gene ID: 103382780
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 188797 bases
Position: chr8:21892039-22080835
Accession: 103382780
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000013476	TUDOR	PF00567.24	6.6e-26	1	1
ENSCSEP00000013440	TUDOR	PF00567.24	6.8e-26	1	1
ENSCSEP00000013514	TUDOR	PF00567.24	6.8e-26	1	1
ENSCSEP00000013476	SNase	PF00565.17	1.6e-65	1	4
ENSCSEP00000013476	SNase	PF00565.17	1.6e-65	2	4
ENSCSEP00000013476	SNase	PF00565.17	1.6e-65	3	4
ENSCSEP00000013476	SNase	PF00565.17	1.6e-65	4	4
ENSCSEP00000013440	SNase	PF00565.17	1.9e-65	1	4
ENSCSEP00000013440	SNase	PF00565.17	1.9e-65	2	4
ENSCSEP00000013440	SNase	PF00565.17	1.9e-65	3	4
ENSCSEP00000013440	SNase	PF00565.17	1.9e-65	4	4
ENSCSEP00000013514	SNase	PF00565.17	3e-60	1	4
ENSCSEP00000013514	SNase	PF00565.17	3e-60	2	4
ENSCSEP00000013514	SNase	PF00565.17	3e-60	3	4
ENSCSEP00000013514	SNase	PF00565.17	3e-60	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000013673	-	6805	-	ENSCSEP00000013514	884 (aa)	-	-
ENSCSET00000013599	-	4944	XM_008315686	ENSCSEP00000013440	911 (aa)	XP_008313908	UPI000495082C
ENSCSET00000013635	-	3578	-	ENSCSEP00000013476	885 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000008661's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000008661's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000008661	snd1	98	84.340	ENSG00000197157	SND1	98	84.340	Homo_sapiens
ENSCSEG00000008661	snd1	100	94.512	ENSAPOG00000017599	snd1	100	94.512	Acanthochromis_polyacanthus
ENSCSEG00000008661	snd1	98	84.040	ENSAMEG00000004664	SND1	93	84.040	Ailuropoda_melanoleuca
ENSCSEG00000008661	snd1	100	90.340	ENSACIG00000003551	snd1	100	90.340	Amphilophus_citrinellus
ENSCSEG00000008661	snd1	100	94.621	ENSAOCG00000014166	snd1	100	94.621	Amphiprion_ocellaris
ENSCSEG00000008661	snd1	100	94.621	ENSAPEG00000007067	snd1	100	94.621	Amphiprion_percula
ENSCSEG00000008661	snd1	99	93.829	ENSATEG00000018475	snd1	89	93.512	Anabas_testudineus
ENSCSEG00000008661	snd1	98	84.228	ENSANAG00000034463	SND1	99	84.199	Aotus_nancymaae
ENSCSEG00000008661	snd1	100	92.536	ENSACLG00000022897	snd1	100	92.536	Astatotilapia_calliptera
ENSCSEG00000008661	snd1	99	88.571	ENSAMXG00000016318	snd1	99	88.571	Astyanax_mexicanus
ENSCSEG00000008661	snd1	98	84.564	ENSBTAG00000010692	SND1	98	84.564	Bos_taurus
ENSCSEG00000008661	snd1	98	47.072	WBGene00006626	tsn-1	98	47.052	Caenorhabditis_elegans
ENSCSEG00000008661	snd1	98	84.228	ENSCJAG00000017668	SND1	99	84.199	Callithrix_jacchus
ENSCSEG00000008661	snd1	99	83.004	ENSCAFG00000001700	SND1	98	84.340	Canis_familiaris
ENSCSEG00000008661	snd1	99	83.004	ENSCAFG00020021639	SND1	98	84.340	Canis_lupus_dingo
ENSCSEG00000008661	snd1	98	84.340	ENSCHIG00000023390	SND1	98	84.340	Capra_hircus
ENSCSEG00000008661	snd1	72	87.544	ENSTSYG00000004979	SND1	96	87.544	Carlito_syrichta
ENSCSEG00000008661	snd1	97	73.761	ENSCAPG00000010677	SND1	97	73.761	Cavia_aperea
ENSCSEG00000008661	snd1	98	83.893	ENSCPOG00000006251	SND1	98	83.893	Cavia_porcellus
ENSCSEG00000008661	snd1	98	84.228	ENSCCAG00000036847	SND1	98	84.228	Cebus_capucinus
ENSCSEG00000008661	snd1	98	84.676	ENSCATG00000035214	SND1	99	84.650	Cercocebus_atys
ENSCSEG00000008661	snd1	98	84.004	ENSCLAG00000011796	SND1	99	83.131	Chinchilla_lanigera
ENSCSEG00000008661	snd1	98	84.676	ENSCSAG00000010182	SND1	98	84.676	Chlorocebus_sabaeus
ENSCSEG00000008661	snd1	80	77.228	ENSCHOG00000002218	SND1	85	77.000	Choloepus_hoffmanni
ENSCSEG00000008661	snd1	100	83.425	ENSCPBG00000018094	SND1	100	83.425	Chrysemys_picta_bellii
ENSCSEG00000008661	snd1	98	56.305	ENSCING00000000524	-	99	55.799	Ciona_intestinalis
ENSCSEG00000008661	snd1	99	56.591	ENSCSAVG00000008807	-	99	56.236	Ciona_savignyi
ENSCSEG00000008661	snd1	98	84.676	ENSCANG00000035119	SND1	98	84.676	Colobus_angolensis_palliatus
ENSCSEG00000008661	snd1	98	83.781	ENSCGRG00001022514	Snd1	98	85.235	Cricetulus_griseus_chok1gshd
ENSCSEG00000008661	snd1	97	83.747	ENSCGRG00000012277	Snd1	99	83.747	Cricetulus_griseus_crigri
ENSCSEG00000008661	snd1	100	94.182	ENSCVAG00000010316	snd1	100	94.182	Cyprinodon_variegatus
ENSCSEG00000008661	snd1	100	88.719	ENSDARG00000006766	snd1	99	90.526	Danio_rerio
ENSCSEG00000008661	snd1	97	81.777	ENSDNOG00000006795	SND1	100	81.777	Dasypus_novemcinctus
ENSCSEG00000008661	snd1	98	84.004	ENSDORG00000000336	Snd1	98	84.004	Dipodomys_ordii
ENSCSEG00000008661	snd1	97	51.094	FBgn0035121	Tudor-SN	99	50.374	Drosophila_melanogaster
ENSCSEG00000008661	snd1	92	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSCSEG00000008661	snd1	60	66.846	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSCSEG00000008661	snd1	97	84.033	ENSEASG00005008513	SND1	98	82.948	Equus_asinus_asinus
ENSCSEG00000008661	snd1	98	84.116	ENSECAG00000011451	SND1	98	84.004	Equus_caballus
ENSCSEG00000008661	snd1	97	77.156	ENSEEUG00000014737	SND1	99	74.066	Erinaceus_europaeus
ENSCSEG00000008661	snd1	99	87.596	ENSELUG00000001805	snd1	96	87.596	Esox_lucius
ENSCSEG00000008661	snd1	99	82.895	ENSFCAG00000008289	SND1	100	82.895	Felis_catus
ENSCSEG00000008661	snd1	98	83.669	ENSFDAG00000015881	SND1	98	83.669	Fukomys_damarensis
ENSCSEG00000008661	snd1	99	93.371	ENSFHEG00000004093	snd1	99	93.371	Fundulus_heteroclitus
ENSCSEG00000008661	snd1	75	83.333	ENSGMOG00000018932	snd1	66	83.333	Gadus_morhua
ENSCSEG00000008661	snd1	100	93.963	ENSGAFG00000008421	snd1	100	93.963	Gambusia_affinis
ENSCSEG00000008661	snd1	100	60.695	ENSGACG00000019793	snd1	100	60.695	Gasterosteus_aculeatus
ENSCSEG00000008661	snd1	98	84.564	ENSGGOG00000009614	SND1	99	84.537	Gorilla_gorilla
ENSCSEG00000008661	snd1	100	92.426	ENSHBUG00000019135	snd1	100	92.426	Haplochromis_burtoni
ENSCSEG00000008661	snd1	98	83.781	ENSHGLG00000003618	SND1	95	87.370	Heterocephalus_glaber_female
ENSCSEG00000008661	snd1	98	83.781	ENSHGLG00100012449	SND1	99	83.781	Heterocephalus_glaber_male
ENSCSEG00000008661	snd1	100	92.097	ENSHCOG00000005266	snd1	100	92.097	Hippocampus_comes
ENSCSEG00000008661	snd1	99	88.364	ENSIPUG00000013279	snd1	99	88.364	Ictalurus_punctatus
ENSCSEG00000008661	snd1	98	84.452	ENSSTOG00000002140	SND1	98	84.452	Ictidomys_tridecemlineatus
ENSCSEG00000008661	snd1	98	84.228	ENSJJAG00000009561	Snd1	98	84.228	Jaculus_jaculus
ENSCSEG00000008661	snd1	100	93.524	ENSKMAG00000016997	snd1	100	93.524	Kryptolebias_marmoratus
ENSCSEG00000008661	snd1	100	93.304	ENSLBEG00000013563	snd1	100	93.304	Labrus_bergylta
ENSCSEG00000008661	snd1	98	87.969	ENSLOCG00000015537	snd1	99	87.269	Lepisosteus_oculatus
ENSCSEG00000008661	snd1	99	83.297	ENSLAFG00000009696	SND1	98	84.564	Loxodonta_africana
ENSCSEG00000008661	snd1	98	84.676	ENSMFAG00000038114	SND1	99	84.650	Macaca_fascicularis
ENSCSEG00000008661	snd1	98	84.676	ENSMMUG00000015432	SND1	98	84.676	Macaca_mulatta
ENSCSEG00000008661	snd1	98	84.676	ENSMNEG00000039808	SND1	100	84.667	Macaca_nemestrina
ENSCSEG00000008661	snd1	98	84.564	ENSMLEG00000029040	SND1	97	87.654	Mandrillus_leucophaeus
ENSCSEG00000008661	snd1	100	92.755	ENSMAMG00000011739	snd1	100	92.755	Mastacembelus_armatus
ENSCSEG00000008661	snd1	100	92.536	ENSMZEG00005005681	snd1	100	92.536	Maylandia_zebra
ENSCSEG00000008661	snd1	98	84.676	ENSMICG00000000097	SND1	98	84.676	Microcebus_murinus
ENSCSEG00000008661	snd1	98	84.228	ENSMOCG00000005040	Snd1	98	84.228	Microtus_ochrogaster
ENSCSEG00000008661	snd1	100	92.536	ENSMMOG00000001795	snd1	100	92.536	Mola_mola
ENSCSEG00000008661	snd1	98	83.669	ENSMODG00000015182	SND1	98	83.669	Monodelphis_domestica
ENSCSEG00000008661	snd1	100	93.304	ENSMALG00000012071	snd1	100	93.304	Monopterus_albus
ENSCSEG00000008661	snd1	98	83.781	MGP_CAROLIEiJ_G0028159	Snd1	99	85.329	Mus_caroli
ENSCSEG00000008661	snd1	98	83.557	ENSMUSG00000001424	Snd1	99	83.663	Mus_musculus
ENSCSEG00000008661	snd1	98	83.781	MGP_PahariEiJ_G0021917	Snd1	99	85.329	Mus_pahari
ENSCSEG00000008661	snd1	98	83.781	MGP_SPRETEiJ_G0029159	Snd1	99	83.993	Mus_spretus
ENSCSEG00000008661	snd1	100	83.114	ENSMPUG00000006545	SND1	100	82.675	Mustela_putorius_furo
ENSCSEG00000008661	snd1	97	83.166	ENSMLUG00000017130	SND1	99	82.497	Myotis_lucifugus
ENSCSEG00000008661	snd1	98	84.116	ENSNGAG00000011186	Snd1	98	84.116	Nannospalax_galili
ENSCSEG00000008661	snd1	100	92.536	ENSNBRG00000006681	snd1	100	92.536	Neolamprologus_brichardi
ENSCSEG00000008661	snd1	98	84.564	ENSNLEG00000012263	SND1	100	84.555	Nomascus_leucogenys
ENSCSEG00000008661	snd1	93	88.889	ENSOPRG00000013405	SND1	90	88.889	Ochotona_princeps
ENSCSEG00000008661	snd1	98	84.116	ENSODEG00000011502	SND1	100	82.876	Octodon_degus
ENSCSEG00000008661	snd1	100	92.426	ENSONIG00000011481	snd1	97	92.426	Oreochromis_niloticus
ENSCSEG00000008661	snd1	98	83.483	ENSOANG00000000817	SND1	98	83.483	Ornithorhynchus_anatinus
ENSCSEG00000008661	snd1	98	83.669	ENSOCUG00000001620	SND1	98	83.669	Oryctolagus_cuniculus
ENSCSEG00000008661	snd1	100	92.316	ENSORLG00000015201	snd1	100	92.316	Oryzias_latipes
ENSCSEG00000008661	snd1	100	92.536	ENSORLG00020013991	snd1	100	92.536	Oryzias_latipes_hni
ENSCSEG00000008661	snd1	100	92.536	ENSORLG00015012436	snd1	100	92.536	Oryzias_latipes_hsok
ENSCSEG00000008661	snd1	100	92.755	ENSOMEG00000006406	snd1	100	92.755	Oryzias_melastigma
ENSCSEG00000008661	snd1	98	84.375	ENSOGAG00000013356	SND1	92	84.375	Otolemur_garnettii
ENSCSEG00000008661	snd1	97	81.962	ENSOARG00000002149	SND1	100	81.962	Ovis_aries
ENSCSEG00000008661	snd1	98	84.452	ENSPPAG00000042947	SND1	99	84.424	Pan_paniscus
ENSCSEG00000008661	snd1	99	82.895	ENSPPRG00000004494	SND1	100	82.895	Panthera_pardus
ENSCSEG00000008661	snd1	99	82.785	ENSPTIG00000014214	SND1	100	82.785	Panthera_tigris_altaica
ENSCSEG00000008661	snd1	98	84.452	ENSPTRG00000023911	SND1	99	84.424	Pan_troglodytes
ENSCSEG00000008661	snd1	97	84.650	ENSPANG00000011997	SND1	99	84.650	Papio_anubis
ENSCSEG00000008661	snd1	99	85.557	ENSPKIG00000023494	snd1	99	85.278	Paramormyrops_kingsleyae
ENSCSEG00000008661	snd1	94	92.206	ENSPMGG00000003629	snd1	100	92.105	Periophthalmus_magnuspinnatus
ENSCSEG00000008661	snd1	98	84.004	ENSPEMG00000010240	Snd1	98	84.004	Peromyscus_maniculatus_bairdii
ENSCSEG00000008661	snd1	97	74.009	ENSPMAG00000007915	-	99	72.912	Petromyzon_marinus
ENSCSEG00000008661	snd1	98	84.228	ENSPCIG00000011561	SND1	98	84.228	Phascolarctos_cinereus
ENSCSEG00000008661	snd1	100	93.743	ENSPFOG00000001557	snd1	100	93.743	Poecilia_formosa
ENSCSEG00000008661	snd1	100	93.853	ENSPLAG00000018459	snd1	97	93.853	Poecilia_latipinna
ENSCSEG00000008661	snd1	100	93.963	ENSPMEG00000006803	snd1	100	93.963	Poecilia_mexicana
ENSCSEG00000008661	snd1	100	93.524	ENSPREG00000002189	snd1	100	93.524	Poecilia_reticulata
ENSCSEG00000008661	snd1	91	88.889	ENSPPYG00000017972	SND1	98	88.889	Pongo_abelii
ENSCSEG00000008661	snd1	98	74.497	ENSPCAG00000011305	SND1	99	73.407	Procavia_capensis
ENSCSEG00000008661	snd1	98	84.787	ENSPCOG00000026791	SND1	100	84.780	Propithecus_coquereli
ENSCSEG00000008661	snd1	98	82.327	ENSPVAG00000013945	SND1	98	82.327	Pteropus_vampyrus
ENSCSEG00000008661	snd1	100	92.426	ENSPNYG00000000932	snd1	100	92.426	Pundamilia_nyererei
ENSCSEG00000008661	snd1	99	89.121	ENSPNAG00000001206	snd1	99	89.121	Pygocentrus_nattereri
ENSCSEG00000008661	snd1	98	83.669	ENSRNOG00000031173	Snd1	100	82.437	Rattus_norvegicus
ENSCSEG00000008661	snd1	71	87.879	ENSRBIG00000027782	-	93	87.879	Rhinopithecus_bieti
ENSCSEG00000008661	snd1	98	84.676	ENSRROG00000033020	SND1	98	84.676	Rhinopithecus_roxellana
ENSCSEG00000008661	snd1	98	84.228	ENSSBOG00000032461	SND1	99	84.199	Saimiri_boliviensis_boliviensis
ENSCSEG00000008661	snd1	98	80.787	ENSSHAG00000015359	SND1	100	80.787	Sarcophilus_harrisii
ENSCSEG00000008661	snd1	98	86.918	ENSSFOG00015001103	snd1	99	86.166	Scleropages_formosus
ENSCSEG00000008661	snd1	100	93.853	ENSSMAG00000001932	snd1	95	93.853	Scophthalmus_maximus
ENSCSEG00000008661	snd1	100	94.182	ENSSDUG00000002699	snd1	94	94.182	Seriola_dumerili
ENSCSEG00000008661	snd1	100	86.608	ENSSLDG00000001950	snd1	100	86.608	Seriola_lalandi_dorsalis
ENSCSEG00000008661	snd1	89	80.265	ENSSARG00000004877	SND1	92	80.265	Sorex_araneus
ENSCSEG00000008661	snd1	72	81.282	ENSSPUG00000017586	SND1	96	81.282	Sphenodon_punctatus
ENSCSEG00000008661	snd1	75	94.924	ENSSPAG00000021398	snd1	99	94.924	Stegastes_partitus
ENSCSEG00000008661	snd1	98	84.004	ENSSSCG00000016590	SND1	98	84.004	Sus_scrofa
ENSCSEG00000008661	snd1	100	91.946	ENSTRUG00000014067	snd1	100	91.438	Takifugu_rubripes
ENSCSEG00000008661	snd1	100	91.109	ENSTNIG00000011019	snd1	100	91.109	Tetraodon_nigroviridis
ENSCSEG00000008661	snd1	96	78.706	ENSTBEG00000003999	SND1	100	78.706	Tupaia_belangeri
ENSCSEG00000008661	snd1	98	79.978	ENSTTRG00000006059	SND1	98	79.978	Tursiops_truncatus
ENSCSEG00000008661	snd1	70	75.584	ENSUAMG00000002820	-	89	75.584	Ursus_americanus
ENSCSEG00000008661	snd1	87	82.890	ENSUAMG00000005604	-	93	82.890	Ursus_americanus
ENSCSEG00000008661	snd1	98	84.228	ENSUMAG00000005960	SND1	98	84.228	Ursus_maritimus
ENSCSEG00000008661	snd1	80	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSCSEG00000008661	snd1	98	84.228	ENSVVUG00000007226	SND1	98	84.228	Vulpes_vulpes
ENSCSEG00000008661	snd1	97	79.358	ENSXETG00000023043	snd1	100	78.881	Xenopus_tropicalis
ENSCSEG00000008661	snd1	94	92.077	ENSXCOG00000013629	snd1	99	91.449	Xiphophorus_couchianus
ENSCSEG00000008661	snd1	100	94.292	ENSXMAG00000011469	snd1	100	94.292	Xiphophorus_maculatus