Description
Ensembl ID
ENSCSEG00000008774 (Gene tree)
Gene ID
103376922
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Plus strand
Length
10012 bases
Position
chr3:3377075-3387086
Accession
103376922
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein ID
Domain
Pfam ID
E-value
Domain number
Total number
ENSCSEP00000013661RRM_1PF00076.221.9e-1711
ENSCSEP00000013647RRM_1PF00076.222e-1711
ENSCSEP00000013632RRM_1PF00076.223e-1711
Transcripts
Transcript ID
Name
Length
RefSeq ID
Protein ID
Length
RefSeq ID
UniportKB ID
ENSCSET00000013821-804-ENSCSEP00000013661230 (aa)--
ENSCSET00000013791-918XM_008307489ENSCSEP00000013632305 (aa)XP_008305711-
ENSCSET00000013806-1823XM_008307490ENSCSEP00000013647232 (aa)XP_008305712UPI0004965E6D
Pathways
Pathway ID
Pathway Name
Source
csem03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)
Paralogs
Ensembl ID
Gene Symbol
Coverage
Identiy
Paralog
Gene Symbol
Coverage
Identiy
ENSCSEG00000008774pabpn16562.420ENSCSEG00000001142pabpn1l7457.513
Orthologs
Ensembl ID
Gene Symbol
Coverage
Identiy
Ortholog
Gene Symbol
Coverage
Identiy
Species
ENSCSEG00000008774pabpn18980.476ENSG00000100836PABPN19481.548Homo_sapiens
ENSCSEG00000008774pabpn19971.674ENSG00000258643BCL2L2-PABPN17071.674Homo_sapiens
ENSCSEG00000008774pabpn110097.414ENSAPOG00000016425pabpn110097.414Acanthochromis_polyacanthus
ENSCSEG00000008774pabpn18183.684ENSAMEG00000007048BCL2L2-PABPN110083.684Ailuropoda_melanoleuca
ENSCSEG00000008774pabpn19595.475ENSACIG00000021744pabpn110097.159Amphilophus_citrinellus
ENSCSEG00000008774pabpn110097.414ENSAOCG00000015805pabpn110097.414Amphiprion_ocellaris
ENSCSEG00000008774pabpn110097.414ENSAPEG00000009623pabpn110097.414Amphiprion_percula
ENSCSEG00000008774pabpn110097.845ENSATEG00000020531pabpn110097.845Anabas_testudineus
ENSCSEG00000008774pabpn18184.737ENSACAG00000006185-8172.650Anolis_carolinensis
ENSCSEG00000008774pabpn18483.333ENSANAG00000024513-8474.895Aotus_nancymaae
ENSCSEG00000008774pabpn19595.045ENSACLG00000016374pabpn18290.204Astatotilapia_calliptera
ENSCSEG00000008774pabpn110096.567ENSAMXG00000000452pabpn110096.610Astyanax_mexicanus
ENSCSEG00000008774pabpn18182.292ENSBTAG00000053753-7182.292Bos_taurus
ENSCSEG00000008774pabpn18980.383ENSBTAG00000006884PABPN18669.318Bos_taurus
ENSCSEG00000008774pabpn18476.020ENSBTAG00000050594-7481.720Bos_taurus
ENSCSEG00000008774pabpn16258.904WBGene00003904pabp-28655.000Caenorhabditis_elegans
ENSCSEG00000008774pabpn19975.966ENSCJAG00000007960-8476.395Callithrix_jacchus
ENSCSEG00000008774pabpn17179.762ENSCJAG00000004407-8479.762Callithrix_jacchus
ENSCSEG00000008774pabpn18980.476ENSCAFG00000011482PABPN18670.455Canis_familiaris
ENSCSEG00000008774pabpn18980.476ENSCAFG00020007298-8670.076Canis_lupus_dingo
ENSCSEG00000008774pabpn18980.476ENSCAFG00020006651-8670.076Canis_lupus_dingo
ENSCSEG00000008774pabpn18980.476ENSCHIG00000012184PABPN18670.076Capra_hircus
ENSCSEG00000008774pabpn19971.674ENSTSYG00000033996BCL2L2-PABPN19481.548Carlito_syrichta
ENSCSEG00000008774pabpn15882.963ENSCAPG00000009461-9682.963Cavia_aperea
ENSCSEG00000008774pabpn18980.000ENSCPOG00000025574PABPN16879.439Cavia_porcellus
ENSCSEG00000008774pabpn19975.966ENSCCAG00000033954BCL2L2-PABPN18476.395Cebus_capucinus
ENSCSEG00000008774pabpn19975.966ENSCATG00000038536BCL2L2-PABPN18476.395Cercocebus_atys
ENSCSEG00000008774pabpn16581.457ENSCLAG00000012423PABPN17058.850Chinchilla_lanigera
ENSCSEG00000008774pabpn18979.048ENSCSAG00000016036PABPN18668.939Chlorocebus_sabaeus
ENSCSEG00000008774pabpn18972.857ENSCHOG00000004798BCL2L2-PABPN19270.909Choloepus_hoffmanni
ENSCSEG00000008774pabpn17183.333ENSCPBG00000026060-9483.333Chrysemys_picta_bellii
ENSCSEG00000008774pabpn19063.033ENSCING00000012468-8962.085Ciona_intestinalis
ENSCSEG00000008774pabpn17664.607ENSCSAVG00000002001-9361.677Ciona_savignyi
ENSCSEG00000008774pabpn19971.674ENSCANG00000009750BCL2L2-PABPN19481.548Colobus_angolensis_palliatus
ENSCSEG00000008774pabpn18570.707ENSCANG00000030980-8763.445Colobus_angolensis_palliatus
ENSCSEG00000008774pabpn18980.000ENSCGRG00001019696Pabpn19480.952Cricetulus_griseus_chok1gshd
ENSCSEG00000008774pabpn16390.476ENSCGRG00000011102Pabpn19190.476Cricetulus_griseus_crigri
ENSCSEG00000008774pabpn110091.880ENSCVAG00000003152pabpn110093.590Cyprinodon_variegatus
ENSCSEG00000008774pabpn110096.552ENSDARG00000045373pabpn110096.552Danio_rerio
ENSCSEG00000008774pabpn18153.476ENSDARG00000087996pabpn1l8659.184Danio_rerio
ENSCSEG00000008774pabpn18980.476ENSDNOG00000023682PABPN18670.076Dasypus_novemcinctus
ENSCSEG00000008774pabpn18979.524ENSDORG00000028966-6878.972Dipodomys_ordii
ENSCSEG00000008774pabpn15781.955ENSDORG00000023928-8581.148Dipodomys_ordii
ENSCSEG00000008774pabpn18563.131FBgn0005648Pabp210054.825Drosophila_melanogaster
ENSCSEG00000008774pabpn19973.276ENSEBUG00000002322pabpn19973.276Eptatretus_burgeri
ENSCSEG00000008774pabpn18980.476ENSEASG00005011716PABPN18670.076Equus_asinus_asinus
ENSCSEG00000008774pabpn18879.808ENSECAG00000011652PABPN18370.161Equus_caballus
ENSCSEG00000008774pabpn18680.097ENSEEUG00000012973-6680.829Erinaceus_europaeus
ENSCSEG00000008774pabpn110094.093ENSELUG00000022654pabpn110094.093Esox_lucius
ENSCSEG00000008774pabpn18980.476ENSFCAG00000031922PABPN18670.076Felis_catus
ENSCSEG00000008774pabpn17181.548ENSFDAG00000018381BCL2L2-PABPN19481.548Fukomys_damarensis
ENSCSEG00000008774pabpn110093.966ENSFHEG00000007215pabpn110093.966Fundulus_heteroclitus
ENSCSEG00000008774pabpn19791.031ENSGMOG00000003922pabpn18291.770Gadus_morhua
ENSCSEG00000008774pabpn18381.313ENSGALG00000052930-6379.545Gallus_gallus
ENSCSEG00000008774pabpn110096.581ENSGAFG00000017099pabpn110096.581Gambusia_affinis
ENSCSEG00000008774pabpn19794.595ENSGACG00000002167pabpn110091.093Gasterosteus_aculeatus
ENSCSEG00000008774pabpn19465.812ENSGGOG00000025919-9869.128Gorilla_gorilla
ENSCSEG00000008774pabpn18969.231ENSGGOG00000039675-9165.417Gorilla_gorilla
ENSCSEG00000008774pabpn19975.966ENSGGOG00000022683-8476.395Gorilla_gorilla
ENSCSEG00000008774pabpn110097.414ENSHBUG00000019523pabpn110097.414Haplochromis_burtoni
ENSCSEG00000008774pabpn19168.396ENSHGLG00000018588-7072.539Heterocephalus_glaber_female
ENSCSEG00000008774pabpn17163.473ENSHGLG00000009842-9363.473Heterocephalus_glaber_female
ENSCSEG00000008774pabpn18980.000ENSHGLG00000002927-9290.476Heterocephalus_glaber_female
ENSCSEG00000008774pabpn19168.396ENSHGLG00100015565-8764.629Heterocephalus_glaber_male
ENSCSEG00000008774pabpn19470.588ENSHGLG00100006673-9290.476Heterocephalus_glaber_male
ENSCSEG00000008774pabpn17169.461ENSHGLG00100018935-9472.093Heterocephalus_glaber_male
ENSCSEG00000008774pabpn110096.121ENSHCOG00000004655pabpn110096.121Hippocampus_comes
ENSCSEG00000008774pabpn110089.224ENSIPUG00000000180-9989.224Ictalurus_punctatus
ENSCSEG00000008774pabpn110096.552ENSIPUG00000008085PABPN110096.552Ictalurus_punctatus
ENSCSEG00000008774pabpn17181.548ENSSTOG00000029847BCL2L2-PABPN19481.548Ictidomys_tridecemlineatus
ENSCSEG00000008774pabpn17181.548ENSJJAG00000023507Gm205219481.548Jaculus_jaculus
ENSCSEG00000008774pabpn110095.279ENSKMAG00000018748pabpn110095.708Kryptolebias_marmoratus
ENSCSEG00000008774pabpn110097.845ENSLBEG00000027266pabpn110097.845Labrus_bergylta
ENSCSEG00000008774pabpn17687.571ENSLACG00000000646pabpn18285.106Latimeria_chalumnae
ENSCSEG00000008774pabpn19066.197ENSLOCG00000004694pabpn1l9966.197Lepisosteus_oculatus
ENSCSEG00000008774pabpn19792.342ENSLOCG00000000796pabpn18490.795Lepisosteus_oculatus
ENSCSEG00000008774pabpn16582.119ENSLAFG00000031227-10081.579Loxodonta_africana
ENSCSEG00000008774pabpn16173.944ENSMFAG00000031355-9973.944Macaca_fascicularis
ENSCSEG00000008774pabpn19971.674ENSMFAG00000032183BCL2L2-PABPN19481.548Macaca_fascicularis
ENSCSEG00000008774pabpn18667.805ENSMMUG00000048382-8957.778Macaca_mulatta
ENSCSEG00000008774pabpn19971.674ENSMMUG00000014747BCL2L2-PABPN110081.633Macaca_mulatta
ENSCSEG00000008774pabpn19975.966ENSMNEG00000045065BCL2L2-PABPN18476.395Macaca_nemestrina
ENSCSEG00000008774pabpn17968.449ENSMNEG00000035750-9973.944Macaca_nemestrina
ENSCSEG00000008774pabpn17265.868ENSMLEG00000034623-9971.831Mandrillus_leucophaeus
ENSCSEG00000008774pabpn19971.674ENSMLEG00000043862BCL2L2-PABPN19481.548Mandrillus_leucophaeus
ENSCSEG00000008774pabpn19996.507ENSMAMG00000007979pabpn18396.694Mastacembelus_armatus
ENSCSEG00000008774pabpn19795.946ENSMZEG00005011904pabpn18293.802Maylandia_zebra
ENSCSEG00000008774pabpn19971.674ENSMAUG00000007383Gm205217079.439Mesocricetus_auratus
ENSCSEG00000008774pabpn19976.395ENSMICG00000010002BCL2L2-PABPN18476.395Microcebus_murinus
ENSCSEG00000008774pabpn19971.245ENSMOCG00000018557Gm205219090.476Microtus_ochrogaster
ENSCSEG00000008774pabpn110097.845ENSMMOG00000005405pabpn110097.845Mola_mola
ENSCSEG00000008774pabpn18877.184ENSMODG00000004535-8569.349Monodelphis_domestica
ENSCSEG00000008774pabpn19996.943ENSMALG00000019612pabpn18396.694Monopterus_albus
ENSCSEG00000008774pabpn19970.815MGP_CAROLIEiJ_G0019276Gm205217070.815Mus_caroli
ENSCSEG00000008774pabpn18979.048MGP_CAROLIEiJ_G0019277Pabpn19089.796Mus_caroli
ENSCSEG00000008774pabpn18979.524ENSMUSG00000022194Pabpn19089.796Mus_musculus
ENSCSEG00000008774pabpn19971.245ENSMUSG00000092232Gm205217071.245Mus_musculus
ENSCSEG00000008774pabpn19971.245MGP_PahariEiJ_G0030294Gm205217071.245Mus_pahari
ENSCSEG00000008774pabpn18979.524MGP_PahariEiJ_G0030295Pabpn110090.476Mus_pahari
ENSCSEG00000008774pabpn18979.524MGP_SPRETEiJ_G0020166Pabpn19089.796Mus_spretus
ENSCSEG00000008774pabpn19971.245MGP_SPRETEiJ_G0020165Gm205217071.245Mus_spretus
ENSCSEG00000008774pabpn16681.410ENSMPUG00000006775-9082.895Mustela_putorius_furo
ENSCSEG00000008774pabpn18480.808ENSMLUG00000028677-8572.458Myotis_lucifugus
ENSCSEG00000008774pabpn18182.632ENSMLUG00000003800-10082.632Myotis_lucifugus
ENSCSEG00000008774pabpn18878.571ENSMLUG00000012452-8270.238Myotis_lucifugus
ENSCSEG00000008774pabpn19972.103ENSNGAG00000019529Gm205217072.103Nannospalax_galili
ENSCSEG00000008774pabpn19795.946ENSNBRG00000023955pabpn110097.159Neolamprologus_brichardi
ENSCSEG00000008774pabpn16460.811ENSNLEG00000035292-9960.811Nomascus_leucogenys
ENSCSEG00000008774pabpn18668.780ENSNLEG00000030598-7769.474Nomascus_leucogenys
ENSCSEG00000008774pabpn19971.674ENSNLEG00000015007-7479.907Nomascus_leucogenys
ENSCSEG00000008774pabpn18972.464ENSODEG00000003739-6972.277Octodon_degus
ENSCSEG00000008774pabpn19971.245ENSODEG00000002083BCL2L2-PABPN16879.439Octodon_degus
ENSCSEG00000008774pabpn17672.067ENSODEG00000011555-8970.833Octodon_degus
ENSCSEG00000008774pabpn19795.946ENSONIG00000008112pabpn18293.802Oreochromis_niloticus
ENSCSEG00000008774pabpn16383.673ENSOANG00000009218-10083.673Ornithorhynchus_anatinus
ENSCSEG00000008774pabpn18980.000ENSOCUG00000016174PABPN18769.710Oryctolagus_cuniculus
ENSCSEG00000008774pabpn19996.507ENSORLG00000027900pabpn19496.380Oryzias_latipes
ENSCSEG00000008774pabpn19996.507ENSORLG00020004681pabpn18396.694Oryzias_latipes_hni
ENSCSEG00000008774pabpn110096.983ENSORLG00015000018pabpn110096.983Oryzias_latipes_hsok
ENSCSEG00000008774pabpn19795.495ENSOMEG00000016618pabpn18296.804Oryzias_melastigma
ENSCSEG00000008774pabpn18980.476ENSOGAG00000008710PABPN18670.076Otolemur_garnettii
ENSCSEG00000008774pabpn19971.674ENSOARG00000019336BCL2L2-PABPN16471.674Ovis_aries
ENSCSEG00000008774pabpn19971.674ENSPPAG00000028984BCL2L2-PABPN19082.895Pan_paniscus
ENSCSEG00000008774pabpn17166.867ENSPPAG00000039421-9366.867Pan_paniscus
ENSCSEG00000008774pabpn18980.476ENSPPRG00000010567PABPN18670.076Panthera_pardus
ENSCSEG00000008774pabpn17181.548ENSPTIG00000001063BCL2L2-PABPN19481.548Panthera_tigris_altaica
ENSCSEG00000008774pabpn110062.821ENSPTRG00000047273-9360.317Pan_troglodytes
ENSCSEG00000008774pabpn19975.966ENSPTRG00000006167BCL2L28476.395Pan_troglodytes
ENSCSEG00000008774pabpn18469.192ENSPANG00000023326-9974.648Papio_anubis
ENSCSEG00000008774pabpn19975.966ENSPANG00000021100BCL2L2-PABPN18476.395Papio_anubis
ENSCSEG00000008774pabpn19994.323ENSPKIG00000008144-8294.979Paramormyrops_kingsleyae
ENSCSEG00000008774pabpn110091.416ENSPKIG00000018052pabpn110094.421Paramormyrops_kingsleyae
ENSCSEG00000008774pabpn17170.122ENSPKIG00000008340pabpn1l8667.598Paramormyrops_kingsleyae
ENSCSEG00000008774pabpn15875.373ENSPSIG00000011959-9575.373Pelodiscus_sinensis
ENSCSEG00000008774pabpn19795.045ENSPMGG00000022027pabpn18692.975Periophthalmus_magnuspinnatus
ENSCSEG00000008774pabpn19971.674ENSPEMG00000008332Gm205218990.476Peromyscus_maniculatus_bairdii
ENSCSEG00000008774pabpn18075.269ENSPMAG00000006212pabpn19965.041Petromyzon_marinus
ENSCSEG00000008774pabpn18977.990ENSPCIG00000027751-8669.697Phascolarctos_cinereus
ENSCSEG00000008774pabpn110095.726ENSPFOG00000010351pabpn19995.726Poecilia_formosa
ENSCSEG00000008774pabpn19995.671ENSPLAG00000022696pabpn18395.902Poecilia_latipinna
ENSCSEG00000008774pabpn110095.726ENSPMEG00000020856pabpn110095.726Poecilia_mexicana
ENSCSEG00000008774pabpn110096.154ENSPREG00000011278pabpn110096.154Poecilia_reticulata
ENSCSEG00000008774pabpn18381.443ENSPPYG00000005663PABPN18870.161Pongo_abelii
ENSCSEG00000008774pabpn18367.857ENSPCAG00000005902PABPN18459.600Procavia_capensis
ENSCSEG00000008774pabpn19976.395ENSPCOG00000028047BCL2L2-PABPN18476.395Propithecus_coquereli
ENSCSEG00000008774pabpn18880.383ENSPVAG00000005270PABPN18669.202Pteropus_vampyrus
ENSCSEG00000008774pabpn110097.414ENSPNYG00000013182pabpn110097.414Pundamilia_nyererei
ENSCSEG00000008774pabpn110097.414ENSPNAG00000023526pabpn110097.414Pygocentrus_nattereri
ENSCSEG00000008774pabpn18862.319ENSPNAG00000021666pabpn1l8469.591Pygocentrus_nattereri
ENSCSEG00000008774pabpn18980.000ENSRNOG00000042195Pabpn16979.439Rattus_norvegicus
ENSCSEG00000008774pabpn19169.626ENSRBIG00000042811-8769.159Rhinopithecus_bieti
ENSCSEG00000008774pabpn19471.041ENSRBIG00000040762BCL2L2-PABPN16771.889Rhinopithecus_bieti
ENSCSEG00000008774pabpn19368.981ENSRBIG00000039547-8265.625Rhinopithecus_bieti
ENSCSEG00000008774pabpn19166.204ENSRROG00000036409-6466.204Rhinopithecus_roxellana
ENSCSEG00000008774pabpn19466.071ENSRROG00000040409-8266.071Rhinopithecus_roxellana
ENSCSEG00000008774pabpn19471.041ENSRROG00000045535BCL2L2-PABPN19481.548Rhinopithecus_roxellana
ENSCSEG00000008774pabpn19967.886ENSSBOG00000026930BCL2L2-PABPN19082.895Saimiri_boliviensis_boliviensis
ENSCSEG00000008774pabpn18180.952ENSSHAG00000014841-8783.158Sarcophilus_harrisii
ENSCSEG00000008774pabpn19962.605ENSSHAG00000007707-9959.244Sarcophilus_harrisii
ENSCSEG00000008774pabpn16273.944ENSSFOG00015015833pabpn1l8366.120Scleropages_formosus
ENSCSEG00000008774pabpn110095.690ENSSFOG00015014718pabpn110095.690Scleropages_formosus
ENSCSEG00000008774pabpn110089.270ENSSFOG00015012565pabpn110089.270Scleropages_formosus
ENSCSEG00000008774pabpn110097.414ENSSMAG00000020157pabpn110097.414Scophthalmus_maximus
ENSCSEG00000008774pabpn19997.380ENSSDUG00000020582pabpn18397.521Seriola_dumerili
ENSCSEG00000008774pabpn110097.845ENSSLDG00000007118pabpn110097.845Seriola_lalandi_dorsalis
ENSCSEG00000008774pabpn17183.333ENSSPUG00000018308-9483.333Sphenodon_punctatus
ENSCSEG00000008774pabpn110096.567ENSSPAG00000021658pabpn110096.567Stegastes_partitus
ENSCSEG00000008774pabpn19262.037ENSSSCG00000034805-7958.095Sus_scrofa
ENSCSEG00000008774pabpn18980.476ENSSSCG00000002023PABPN18670.076Sus_scrofa
ENSCSEG00000008774pabpn110096.121ENSTRUG00000023664pabpn110096.121Takifugu_rubripes
ENSCSEG00000008774pabpn18895.545ENSTNIG00000005369pabpn19495.545Tetraodon_nigroviridis
ENSCSEG00000008774pabpn18980.476ENSUAMG00000024460PABPN16879.907Ursus_americanus
ENSCSEG00000008774pabpn19971.674ENSUMAG00000014288BCL2L2-PABPN17071.674Ursus_maritimus
ENSCSEG00000008774pabpn19971.674ENSVVUG00000019912BCL2L2-PABPN17682.474Vulpes_vulpes
ENSCSEG00000008774pabpn18484.184ENSXETG00000014597pabpn17380.556Xenopus_tropicalis
ENSCSEG00000008774pabpn17584.571ENSXCOG00000005158pabpn19884.571Xiphophorus_couchianus
ENSCSEG00000008774pabpn110096.581ENSXMAG00000006196pabpn110096.581Xiphophorus_maculatus