EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000008840 (Gene tree)
Gene ID: 103393431
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding protein fox-1 homolog 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 14387 bases
Position: chr17:13179348-13193734
Accession: 103393431
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000013727	Fox-1_C	PF12414.8	1.1e-42	1	1
ENSCSEP00000013736	Fox-1_C	PF12414.8	1.1e-42	1	1
ENSCSEP00000013727	RRM_1	PF00076.22	8.1e-18	1	1
ENSCSEP00000013736	RRM_1	PF00076.22	8.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000013888	-	4942	XM_008330399	ENSCSEP00000013727	370 (aa)	XP_008328621	UPI0004953798
ENSCSET00000013897	-	4672	-	ENSCSEP00000013736	370 (aa)	-	UPI0004953798

Gene Model

Click here to download ENSCSEG00000008840's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000008840's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000008840	rbfox1	99	52.255	ENSCSEG00000018898	rbfox1l	85	52.255
ENSCSEG00000008840	rbfox1	100	60.582	ENSCSEG00000015567	RBFOX3	94	60.317
ENSCSEG00000008840	rbfox1	70	58.065	ENSCSEG00000007748	rbfox2	69	53.463
ENSCSEG00000008840	rbfox1	71	61.258	ENSCSEG00000007360	-	74	56.284
ENSCSEG00000008840	rbfox1	89	59.226	ENSCSEG00000020606	RBFOX3	85	60.811

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000008840	rbfox1	100	76.216	ENSG00000078328	RBFOX1	95	76.216	Homo_sapiens
ENSCSEG00000008840	rbfox1	100	84.865	ENSAPOG00000003197	rbfox1	95	85.135	Acanthochromis_polyacanthus
ENSCSEG00000008840	rbfox1	61	70.089	ENSAMEG00000008605	RBFOX1	82	70.089	Ailuropoda_melanoleuca
ENSCSEG00000008840	rbfox1	69	70.175	ENSACIG00000005478	rbfox1	74	68.000	Amphilophus_citrinellus
ENSCSEG00000008840	rbfox1	73	82.963	ENSAOCG00000008283	rbfox1	91	83.333	Amphiprion_ocellaris
ENSCSEG00000008840	rbfox1	100	67.358	ENSAPEG00000010636	rbfox1	100	68.912	Amphiprion_percula
ENSCSEG00000008840	rbfox1	73	81.550	ENSATEG00000007513	rbfox1	91	82.657	Anabas_testudineus
ENSCSEG00000008840	rbfox1	100	71.537	ENSAPLG00000013263	RBFOX1	94	71.537	Anas_platyrhynchos
ENSCSEG00000008840	rbfox1	100	69.250	ENSACAG00000004013	RBFOX1	95	69.250	Anolis_carolinensis
ENSCSEG00000008840	rbfox1	100	76.757	ENSANAG00000029527	RBFOX1	93	76.757	Aotus_nancymaae
ENSCSEG00000008840	rbfox1	61	70.536	ENSAMXG00000002431	rbfox1	60	71.875	Astyanax_mexicanus
ENSCSEG00000008840	rbfox1	100	69.347	ENSBTAG00000007210	RBFOX1	95	69.347	Bos_taurus
ENSCSEG00000008840	rbfox1	100	75.202	ENSCJAG00000017351	RBFOX1	90	75.202	Callithrix_jacchus
ENSCSEG00000008840	rbfox1	100	69.598	ENSCAFG00000019082	RBFOX1	90	69.598	Canis_familiaris
ENSCSEG00000008840	rbfox1	67	65.217	ENSCAFG00020024881	RBFOX1	72	65.217	Canis_lupus_dingo
ENSCSEG00000008840	rbfox1	100	69.095	ENSCHIG00000023549	RBFOX1	95	69.095	Capra_hircus
ENSCSEG00000008840	rbfox1	100	76.486	ENSTSYG00000005334	RBFOX1	97	76.486	Carlito_syrichta
ENSCSEG00000008840	rbfox1	100	71.537	ENSCAPG00000017669	RBFOX1	97	71.537	Cavia_aperea
ENSCSEG00000008840	rbfox1	100	71.537	ENSCPOG00000011314	RBFOX1	96	71.537	Cavia_porcellus
ENSCSEG00000008840	rbfox1	100	76.757	ENSCCAG00000023031	RBFOX1	93	76.757	Cebus_capucinus
ENSCSEG00000008840	rbfox1	100	76.216	ENSCATG00000033816	RBFOX1	93	76.216	Cercocebus_atys
ENSCSEG00000008840	rbfox1	100	71.285	ENSCLAG00000012761	RBFOX1	95	71.285	Chinchilla_lanigera
ENSCSEG00000008840	rbfox1	84	67.552	ENSCSAG00000008739	RBFOX1	85	67.552	Chlorocebus_sabaeus
ENSCSEG00000008840	rbfox1	83	69.903	ENSCHOG00000012843	RBFOX1	69	69.903	Choloepus_hoffmanni
ENSCSEG00000008840	rbfox1	100	77.027	ENSCPBG00000026626	RBFOX1	95	69.598	Chrysemys_picta_bellii
ENSCSEG00000008840	rbfox1	100	76.216	ENSCANG00000033125	RBFOX1	93	76.216	Colobus_angolensis_palliatus
ENSCSEG00000008840	rbfox1	100	71.285	ENSCGRG00001013729	Rbfox1	95	71.285	Cricetulus_griseus_chok1gshd
ENSCSEG00000008840	rbfox1	100	71.285	ENSCGRG00000003272	Rbfox1	95	71.285	Cricetulus_griseus_crigri
ENSCSEG00000008840	rbfox1	100	77.568	ENSDARG00000014746	rbfox1	85	89.899	Danio_rerio
ENSCSEG00000008840	rbfox1	100	71.537	ENSDNOG00000043612	RBFOX1	91	71.537	Dasypus_novemcinctus
ENSCSEG00000008840	rbfox1	100	71.285	ENSDORG00000010024	Rbfox1	94	72.040	Dipodomys_ordii
ENSCSEG00000008840	rbfox1	100	60.050	ENSETEG00000003771	RBFOX1	90	60.050	Echinops_telfairi
ENSCSEG00000008840	rbfox1	100	71.537	ENSEASG00005011599	RBFOX1	95	69.598	Equus_asinus_asinus
ENSCSEG00000008840	rbfox1	100	70.789	ENSECAG00000012667	RBFOX1	88	69.091	Equus_caballus
ENSCSEG00000008840	rbfox1	58	70.233	ENSELUG00000013096	rbfox1	66	70.698	Esox_lucius
ENSCSEG00000008840	rbfox1	100	76.757	ENSFCAG00000025322	RBFOX1	86	76.757	Felis_catus
ENSCSEG00000008840	rbfox1	82	68.580	ENSFALG00000004027	RBFOX1	93	68.580	Ficedula_albicollis
ENSCSEG00000008840	rbfox1	100	71.537	ENSFDAG00000007388	RBFOX1	95	71.537	Fukomys_damarensis
ENSCSEG00000008840	rbfox1	100	68.844	ENSGALG00000034325	RBFOX1	90	68.844	Gallus_gallus
ENSCSEG00000008840	rbfox1	100	74.663	ENSGAGG00000023681	RBFOX1	100	71.285	Gopherus_agassizii
ENSCSEG00000008840	rbfox1	100	76.216	ENSGGOG00000016871	-	93	76.216	Gorilla_gorilla
ENSCSEG00000008840	rbfox1	100	71.537	ENSHGLG00000016944	RBFOX1	95	71.537	Heterocephalus_glaber_female
ENSCSEG00000008840	rbfox1	100	71.537	ENSHGLG00100003272	RBFOX1	95	71.537	Heterocephalus_glaber_male
ENSCSEG00000008840	rbfox1	89	76.577	ENSHCOG00000016419	rbfox1	91	76.418	Hippocampus_comes
ENSCSEG00000008840	rbfox1	100	75.676	ENSIPUG00000015215	rbfox1	100	76.486	Ictalurus_punctatus
ENSCSEG00000008840	rbfox1	100	71.285	ENSSTOG00000000322	RBFOX1	96	71.285	Ictidomys_tridecemlineatus
ENSCSEG00000008840	rbfox1	100	70.781	ENSJJAG00000002575	Rbfox1	95	70.781	Jaculus_jaculus
ENSCSEG00000008840	rbfox1	97	83.520	ENSLBEG00000014659	rbfox1	94	83.799	Labrus_bergylta
ENSCSEG00000008840	rbfox1	100	72.000	ENSLOCG00000006675	rbfox1	95	72.000	Lepisosteus_oculatus
ENSCSEG00000008840	rbfox1	76	76.849	ENSLAFG00000011480	RBFOX1	100	76.849	Loxodonta_africana
ENSCSEG00000008840	rbfox1	100	76.216	ENSMFAG00000036447	RBFOX1	93	76.216	Macaca_fascicularis
ENSCSEG00000008840	rbfox1	100	76.216	ENSMMUG00000003458	RBFOX1	93	76.216	Macaca_mulatta
ENSCSEG00000008840	rbfox1	100	69.095	ENSMNEG00000032034	RBFOX1	90	69.095	Macaca_nemestrina
ENSCSEG00000008840	rbfox1	100	76.216	ENSMLEG00000015382	RBFOX1	93	76.216	Mandrillus_leucophaeus
ENSCSEG00000008840	rbfox1	100	80.270	ENSMAMG00000003142	rbfox1	100	82.162	Mastacembelus_armatus
ENSCSEG00000008840	rbfox1	71	66.782	ENSMGAG00000008606	RBFOX1	91	66.197	Meleagris_gallopavo
ENSCSEG00000008840	rbfox1	100	41.927	ENSMAUG00000020570	Rbfox1	94	41.667	Mesocricetus_auratus
ENSCSEG00000008840	rbfox1	100	75.946	ENSMICG00000034286	RBFOX1	93	75.946	Microcebus_murinus
ENSCSEG00000008840	rbfox1	100	71.285	ENSMOCG00000020932	Rbfox1	98	71.285	Microtus_ochrogaster
ENSCSEG00000008840	rbfox1	89	75.455	ENSMMOG00000009716	rbfox1	86	74.545	Mola_mola
ENSCSEG00000008840	rbfox1	84	67.847	ENSMODG00000005826	RBFOX1	90	67.847	Monodelphis_domestica
ENSCSEG00000008840	rbfox1	100	80.000	ENSMALG00000003337	rbfox1	94	80.270	Monopterus_albus
ENSCSEG00000008840	rbfox1	100	71.285	MGP_CAROLIEiJ_G0020427	Rbfox1	95	71.285	Mus_caroli
ENSCSEG00000008840	rbfox1	100	72.823	ENSMUSG00000008658	Rbfox1	99	80.303	Mus_musculus
ENSCSEG00000008840	rbfox1	100	71.285	MGP_PahariEiJ_G0016135	Rbfox1	95	71.285	Mus_pahari
ENSCSEG00000008840	rbfox1	100	71.033	MGP_SPRETEiJ_G0021321	Rbfox1	95	71.033	Mus_spretus
ENSCSEG00000008840	rbfox1	84	67.257	ENSMPUG00000014822	RBFOX1	81	67.257	Mustela_putorius_furo
ENSCSEG00000008840	rbfox1	76	77.097	ENSMLUG00000015896	RBFOX1	100	77.097	Myotis_lucifugus
ENSCSEG00000008840	rbfox1	100	71.033	ENSNGAG00000023276	Rbfox1	97	71.033	Nannospalax_galili
ENSCSEG00000008840	rbfox1	100	66.244	ENSNBRG00000011084	rbfox1	91	66.751	Neolamprologus_brichardi
ENSCSEG00000008840	rbfox1	100	76.486	ENSNLEG00000010017	-	93	76.486	Nomascus_leucogenys
ENSCSEG00000008840	rbfox1	88	71.429	ENSMEUG00000012525	RBFOX1	73	71.429	Notamacropus_eugenii
ENSCSEG00000008840	rbfox1	88	70.536	ENSOPRG00000006199	-	73	70.536	Ochotona_princeps
ENSCSEG00000008840	rbfox1	100	71.537	ENSODEG00000013166	RBFOX1	95	71.537	Octodon_degus
ENSCSEG00000008840	rbfox1	84	67.552	ENSOANG00000002379	RBFOX1	85	67.552	Ornithorhynchus_anatinus
ENSCSEG00000008840	rbfox1	61	71.429	ENSOCUG00000001205	-	91	71.429	Oryctolagus_cuniculus
ENSCSEG00000008840	rbfox1	100	71.033	ENSOGAG00000025535	RBFOX1	95	71.033	Otolemur_garnettii
ENSCSEG00000008840	rbfox1	61	60.268	ENSOARG00000005135	RBFOX1	79	60.268	Ovis_aries
ENSCSEG00000008840	rbfox1	100	76.216	ENSPPAG00000036238	-	97	76.216	Pan_paniscus
ENSCSEG00000008840	rbfox1	100	76.757	ENSPPRG00000006546	RBFOX1	93	76.757	Panthera_pardus
ENSCSEG00000008840	rbfox1	100	64.721	ENSPTIG00000021154	RBFOX1	96	64.267	Panthera_tigris_altaica
ENSCSEG00000008840	rbfox1	100	76.216	ENSPTRG00000007744	RBFOX1	93	76.216	Pan_troglodytes
ENSCSEG00000008840	rbfox1	100	76.216	ENSPANG00000026500	RBFOX1	93	76.216	Papio_anubis
ENSCSEG00000008840	rbfox1	74	74.632	ENSPKIG00000019353	rbfox1	82	74.632	Paramormyrops_kingsleyae
ENSCSEG00000008840	rbfox1	100	75.946	ENSPKIG00000009667	-	95	76.323	Paramormyrops_kingsleyae
ENSCSEG00000008840	rbfox1	100	71.537	ENSPSIG00000006523	RBFOX1	94	71.537	Pelodiscus_sinensis
ENSCSEG00000008840	rbfox1	100	71.285	ENSPEMG00000017607	Rbfox1	95	71.285	Peromyscus_maniculatus_bairdii
ENSCSEG00000008840	rbfox1	71	74.227	ENSPCIG00000026887	RBFOX1	100	73.540	Phascolarctos_cinereus
ENSCSEG00000008840	rbfox1	84	67.552	ENSPPYG00000007079	-	81	67.552	Pongo_abelii
ENSCSEG00000008840	rbfox1	89	63.408	ENSPCAG00000002630	RBFOX1	89	63.408	Procavia_capensis
ENSCSEG00000008840	rbfox1	100	76.216	ENSPCOG00000025687	RBFOX1	93	76.216	Propithecus_coquereli
ENSCSEG00000008840	rbfox1	100	66.080	ENSPVAG00000013467	RBFOX1	90	66.080	Pteropus_vampyrus
ENSCSEG00000008840	rbfox1	100	73.522	ENSPNAG00000023109	rbfox1	100	74.293	Pygocentrus_nattereri
ENSCSEG00000008840	rbfox1	100	71.033	ENSRNOG00000002827	Rbfox1	90	71.033	Rattus_norvegicus
ENSCSEG00000008840	rbfox1	100	76.216	ENSRBIG00000044478	RBFOX1	97	76.216	Rhinopithecus_bieti
ENSCSEG00000008840	rbfox1	100	76.216	ENSRROG00000044411	RBFOX1	93	76.216	Rhinopithecus_roxellana
ENSCSEG00000008840	rbfox1	100	76.757	ENSSBOG00000033726	RBFOX1	93	76.757	Saimiri_boliviensis_boliviensis
ENSCSEG00000008840	rbfox1	100	71.788	ENSSHAG00000009257	RBFOX1	95	71.788	Sarcophilus_harrisii
ENSCSEG00000008840	rbfox1	89	65.487	ENSSFOG00015009955	-	80	66.372	Scleropages_formosus
ENSCSEG00000008840	rbfox1	100	64.324	ENSSFOG00015023675	rbfox1	94	64.054	Scleropages_formosus
ENSCSEG00000008840	rbfox1	100	85.946	ENSSMAG00000015505	rbfox1	91	86.970	Scophthalmus_maximus
ENSCSEG00000008840	rbfox1	100	80.000	ENSSDUG00000016413	rbfox1	94	80.270	Seriola_dumerili
ENSCSEG00000008840	rbfox1	89	78.182	ENSSLDG00000009353	rbfox1	91	84.536	Seriola_lalandi_dorsalis
ENSCSEG00000008840	rbfox1	89	69.369	ENSSPUG00000009732	RBFOX1	87	71.171	Sphenodon_punctatus
ENSCSEG00000008840	rbfox1	100	84.054	ENSSPAG00000009723	rbfox1	97	84.324	Stegastes_partitus
ENSCSEG00000008840	rbfox1	96	70.312	ENSSSCG00000007917	RBFOX1	88	70.312	Sus_scrofa
ENSCSEG00000008840	rbfox1	100	71.537	ENSTGUG00000004562	RBFOX1	97	71.537	Taeniopygia_guttata
ENSCSEG00000008840	rbfox1	100	82.162	ENSTRUG00000020940	rbfox1	96	83.243	Takifugu_rubripes
ENSCSEG00000008840	rbfox1	66	61.246	ENSTNIG00000002567	rbfox1	100	63.668	Tetraodon_nigroviridis
ENSCSEG00000008840	rbfox1	64	83.942	ENSTBEG00000009169	-	56	83.942	Tupaia_belangeri
ENSCSEG00000008840	rbfox1	100	69.095	ENSTTRG00000005700	RBFOX1	90	69.095	Tursiops_truncatus
ENSCSEG00000008840	rbfox1	100	66.755	ENSUAMG00000024633	RBFOX1	100	67.546	Ursus_americanus
ENSCSEG00000008840	rbfox1	100	64.595	ENSUMAG00000003579	RBFOX1	95	63.784	Ursus_maritimus
ENSCSEG00000008840	rbfox1	76	74.277	ENSVPAG00000001284	RBFOX1	74	74.277	Vicugna_pacos
ENSCSEG00000008840	rbfox1	100	77.027	ENSVVUG00000017311	RBFOX1	86	77.027	Vulpes_vulpes