EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000008944 (Gene tree)
Gene ID: 103389685
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 42909 bases
Position: chr14:12936469-12979377
Accession: 103389685
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000013978	R3H	PF01424.22	6.2e-13	1	1
ENSCSEP00000013927	R3H	PF01424.22	6.6e-13	1	1
ENSCSEP00000014104	R3H	PF01424.22	6.8e-13	1	1
ENSCSEP00000014022	R3H	PF01424.22	6.9e-13	1	1
ENSCSEP00000014071	R3H	PF01424.22	6.9e-13	1	1
ENSCSEP00000013904	R3H	PF01424.22	7.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000014268	-	3898	-	ENSCSEP00000014104	1010 (aa)	-	-
ENSCSET00000014142	-	7314	XM_008325207	ENSCSEP00000013978	1021 (aa)	XP_008323429	UPI000497AD96
ENSCSET00000014089	-	7332	XM_008325206	ENSCSEP00000013927	1027 (aa)	XP_008323428	UPI00049629C0
ENSCSET00000014066	-	7434	XM_008325205	ENSCSEP00000013904	1061 (aa)	XP_008323427	UPI00049859C0
ENSCSET00000014186	-	7299	XM_008325208	ENSCSEP00000014022	1016 (aa)	XP_008323430	UPI000495BA46
ENSCSET00000014235	-	7237	-	ENSCSEP00000014071	1016 (aa)	-	UPI000495BA46

Gene Model

Click here to download ENSCSEG00000008944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000008944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000008944	r3hdm1	79	59.532	ENSCSEG00000010925	r3hdm2	81	55.685

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000008944	r3hdm1	82	65.246	ENSG00000048991	R3HDM1	87	65.789	Homo_sapiens
ENSCSEG00000008944	r3hdm1	100	73.265	ENSAPOG00000020850	r3hdm1	96	71.944	Acanthochromis_polyacanthus
ENSCSEG00000008944	r3hdm1	99	43.511	ENSAMEG00000014886	R3HDM1	89	43.384	Ailuropoda_melanoleuca
ENSCSEG00000008944	r3hdm1	100	73.056	ENSAOCG00000005192	r3hdm1	100	71.733	Amphiprion_ocellaris
ENSCSEG00000008944	r3hdm1	100	72.719	ENSAPEG00000016108	r3hdm1	100	71.442	Amphiprion_percula
ENSCSEG00000008944	r3hdm1	100	71.635	ENSATEG00000000232	r3hdm1	100	70.645	Anabas_testudineus
ENSCSEG00000008944	r3hdm1	99	44.875	ENSAPLG00000015231	R3HDM1	89	43.985	Anas_platyrhynchos
ENSCSEG00000008944	r3hdm1	99	44.374	ENSACAG00000001676	R3HDM1	89	43.773	Anolis_carolinensis
ENSCSEG00000008944	r3hdm1	82	65.246	ENSANAG00000035334	R3HDM1	81	65.246	Aotus_nancymaae
ENSCSEG00000008944	r3hdm1	100	69.043	ENSACLG00000027282	r3hdm1	100	68.133	Astatotilapia_calliptera
ENSCSEG00000008944	r3hdm1	91	60.238	ENSAMXG00000012861	R3HDM1	78	70.820	Astyanax_mexicanus
ENSCSEG00000008944	r3hdm1	87	69.350	ENSAMXG00000003536	r3hdm1	82	68.079	Astyanax_mexicanus
ENSCSEG00000008944	r3hdm1	93	51.875	ENSBTAG00000013302	R3HDM1	89	42.974	Bos_taurus
ENSCSEG00000008944	r3hdm1	82	65.246	ENSCJAG00000011718	R3HDM1	81	65.246	Callithrix_jacchus
ENSCSEG00000008944	r3hdm1	93	53.558	ENSCAFG00000005075	R3HDM1	89	43.384	Canis_familiaris
ENSCSEG00000008944	r3hdm1	92	53.558	ENSCAFG00020016119	R3HDM1	89	43.384	Canis_lupus_dingo
ENSCSEG00000008944	r3hdm1	89	55.902	ENSCHIG00000020851	R3HDM1	89	43.251	Capra_hircus
ENSCSEG00000008944	r3hdm1	99	42.543	ENSCPOG00000012784	R3HDM1	100	55.516	Cavia_porcellus
ENSCSEG00000008944	r3hdm1	82	65.472	ENSCCAG00000027199	R3HDM1	81	65.472	Cebus_capucinus
ENSCSEG00000008944	r3hdm1	96	54.494	ENSCATG00000023642	R3HDM1	81	65.909	Cercocebus_atys
ENSCSEG00000008944	r3hdm1	95	43.613	ENSCLAG00000007962	R3HDM1	81	66.809	Chinchilla_lanigera
ENSCSEG00000008944	r3hdm1	99	42.636	ENSCSAG00000016356	R3HDM1	89	41.835	Chlorocebus_sabaeus
ENSCSEG00000008944	r3hdm1	77	57.258	ENSCHOG00000013638	R3HDM1	63	57.258	Choloepus_hoffmanni
ENSCSEG00000008944	r3hdm1	82	70.397	ENSCPBG00000009645	R3HDM1	86	70.397	Chrysemys_picta_bellii
ENSCSEG00000008944	r3hdm1	82	65.246	ENSCANG00000034748	R3HDM1	81	65.246	Colobus_angolensis_palliatus
ENSCSEG00000008944	r3hdm1	99	42.752	ENSCGRG00001012357	R3hdm1	86	41.607	Cricetulus_griseus_chok1gshd
ENSCSEG00000008944	r3hdm1	99	43.243	ENSCGRG00000012080	R3hdm1	100	59.184	Cricetulus_griseus_crigri
ENSCSEG00000008944	r3hdm1	100	68.186	ENSCVAG00000007582	r3hdm1	100	67.087	Cyprinodon_variegatus
ENSCSEG00000008944	r3hdm1	83	59.288	ENSDNOG00000000771	R3HDM1	89	41.286	Dasypus_novemcinctus
ENSCSEG00000008944	r3hdm1	72	56.818	ENSETEG00000013606	R3HDM1	89	39.139	Echinops_telfairi
ENSCSEG00000008944	r3hdm1	85	64.918	ENSEASG00005007392	R3HDM1	88	56.835	Equus_asinus_asinus
ENSCSEG00000008944	r3hdm1	85	64.918	ENSECAG00000019114	R3HDM1	88	56.835	Equus_caballus
ENSCSEG00000008944	r3hdm1	97	46.673	ENSELUG00000004909	R3HDM1	86	42.843	Esox_lucius
ENSCSEG00000008944	r3hdm1	85	64.918	ENSFCAG00000027113	R3HDM1	88	56.938	Felis_catus
ENSCSEG00000008944	r3hdm1	84	45.690	ENSFALG00000013731	R3HDM1	71	44.627	Ficedula_albicollis
ENSCSEG00000008944	r3hdm1	99	42.110	ENSFDAG00000016478	R3HDM1	100	58.562	Fukomys_damarensis
ENSCSEG00000008944	r3hdm1	100	69.388	ENSFHEG00000018713	r3hdm1	100	68.372	Fundulus_heteroclitus
ENSCSEG00000008944	r3hdm1	91	59.309	ENSGALG00000012246	R3HDM1	85	64.765	Gallus_gallus
ENSCSEG00000008944	r3hdm1	100	65.524	ENSGAFG00000006203	r3hdm1	100	64.608	Gambusia_affinis
ENSCSEG00000008944	r3hdm1	95	69.285	ENSGACG00000014925	r3hdm1	95	68.000	Gasterosteus_aculeatus
ENSCSEG00000008944	r3hdm1	88	63.174	ENSGAGG00000007840	R3HDM1	81	61.214	Gopherus_agassizii
ENSCSEG00000008944	r3hdm1	82	65.246	ENSGGOG00000008156	R3HDM1	81	65.246	Gorilla_gorilla
ENSCSEG00000008944	r3hdm1	55	71.678	ENSHBUG00000015737	R3HDM1	96	72.842	Haplochromis_burtoni
ENSCSEG00000008944	r3hdm1	99	42.248	ENSHGLG00000015718	R3HDM1	99	51.159	Heterocephalus_glaber_female
ENSCSEG00000008944	r3hdm1	89	45.175	ENSHGLG00100015374	-	90	34.510	Heterocephalus_glaber_male
ENSCSEG00000008944	r3hdm1	99	42.742	ENSHGLG00100003184	-	100	59.589	Heterocephalus_glaber_male
ENSCSEG00000008944	r3hdm1	100	60.481	ENSHCOG00000013366	r3hdm1	100	59.209	Hippocampus_comes
ENSCSEG00000008944	r3hdm1	87	67.477	ENSIPUG00000001676	R3HDM1	94	64.957	Ictalurus_punctatus
ENSCSEG00000008944	r3hdm1	86	66.667	ENSIPUG00000013629	r3hdm1	83	65.714	Ictalurus_punctatus
ENSCSEG00000008944	r3hdm1	92	55.814	ENSSTOG00000007572	R3HDM1	100	58.219	Ictidomys_tridecemlineatus
ENSCSEG00000008944	r3hdm1	85	67.742	ENSLACG00000005334	R3HDM1	88	45.678	Latimeria_chalumnae
ENSCSEG00000008944	r3hdm1	99	45.599	ENSLOCG00000001641	r3hdm1	90	44.950	Lepisosteus_oculatus
ENSCSEG00000008944	r3hdm1	90	59.322	ENSLAFG00000009065	R3HDM1	86	62.216	Loxodonta_africana
ENSCSEG00000008944	r3hdm1	91	57.831	ENSMFAG00000030331	R3HDM1	81	65.246	Macaca_fascicularis
ENSCSEG00000008944	r3hdm1	82	65.246	ENSMMUG00000009844	R3HDM1	81	65.246	Macaca_mulatta
ENSCSEG00000008944	r3hdm1	91	57.831	ENSMNEG00000027793	R3HDM1	81	65.246	Macaca_nemestrina
ENSCSEG00000008944	r3hdm1	93	54.253	ENSMLEG00000043189	R3HDM1	81	65.246	Mandrillus_leucophaeus
ENSCSEG00000008944	r3hdm1	100	71.548	ENSMAMG00000004532	r3hdm1	100	70.315	Mastacembelus_armatus
ENSCSEG00000008944	r3hdm1	100	71.707	ENSMZEG00005003157	r3hdm1	100	70.818	Maylandia_zebra
ENSCSEG00000008944	r3hdm1	99	45.548	ENSMGAG00000012461	R3HDM1	88	43.868	Meleagris_gallopavo
ENSCSEG00000008944	r3hdm1	99	43.132	ENSMAUG00000010315	R3hdm1	100	59.184	Mesocricetus_auratus
ENSCSEG00000008944	r3hdm1	81	57.297	ENSMICG00000042655	-	85	64.918	Microcebus_murinus
ENSCSEG00000008944	r3hdm1	82	65.246	ENSMICG00000005900	-	81	65.246	Microcebus_murinus
ENSCSEG00000008944	r3hdm1	50	53.803	ENSMOCG00000019833	-	100	58.844	Microtus_ochrogaster
ENSCSEG00000008944	r3hdm1	94	43.762	ENSMODG00000000923	R3HDM1	90	43.264	Monodelphis_domestica
ENSCSEG00000008944	r3hdm1	100	71.359	ENSMALG00000009000	r3hdm1	90	70.157	Monopterus_albus
ENSCSEG00000008944	r3hdm1	99	42.896	MGP_CAROLIEiJ_G0014543	R3hdm1	100	58.923	Mus_caroli
ENSCSEG00000008944	r3hdm1	99	42.896	ENSMUSG00000056211	R3hdm1	100	58.923	Mus_musculus
ENSCSEG00000008944	r3hdm1	99	42.654	MGP_PahariEiJ_G0027779	R3hdm1	100	58.367	Mus_pahari
ENSCSEG00000008944	r3hdm1	99	42.896	MGP_SPRETEiJ_G0015350	R3hdm1	100	58.923	Mus_spretus
ENSCSEG00000008944	r3hdm1	93	53.558	ENSMPUG00000002412	R3HDM1	89	43.195	Mustela_putorius_furo
ENSCSEG00000008944	r3hdm1	99	43.474	ENSMLUG00000013824	R3HDM1	89	42.416	Myotis_lucifugus
ENSCSEG00000008944	r3hdm1	82	65.246	ENSNLEG00000008622	R3HDM1	81	65.246	Nomascus_leucogenys
ENSCSEG00000008944	r3hdm1	95	38.710	ENSMEUG00000011784	R3HDM1	90	39.641	Notamacropus_eugenii
ENSCSEG00000008944	r3hdm1	99	42.019	ENSODEG00000008607	R3HDM1	100	58.305	Octodon_degus
ENSCSEG00000008944	r3hdm1	95	70.926	ENSONIG00000012017	r3hdm1	89	69.889	Oreochromis_niloticus
ENSCSEG00000008944	r3hdm1	99	42.777	ENSOANG00000007987	R3HDM1	89	42.547	Ornithorhynchus_anatinus
ENSCSEG00000008944	r3hdm1	86	58.612	ENSOCUG00000017366	R3HDM1	97	42.521	Oryctolagus_cuniculus
ENSCSEG00000008944	r3hdm1	100	62.908	ENSORLG00000004297	r3hdm1	100	62.535	Oryzias_latipes
ENSCSEG00000008944	r3hdm1	100	63.557	ENSORLG00015017355	r3hdm1	100	62.974	Oryzias_latipes_hsok
ENSCSEG00000008944	r3hdm1	54	66.607	ENSOMEG00000003882	-	99	66.427	Oryzias_melastigma
ENSCSEG00000008944	r3hdm1	99	43.944	ENSOGAG00000003136	R3HDM1	89	42.789	Otolemur_garnettii
ENSCSEG00000008944	r3hdm1	89	55.902	ENSOARG00000010788	R3HDM1	89	43.251	Ovis_aries
ENSCSEG00000008944	r3hdm1	82	65.246	ENSPPAG00000027858	R3HDM1	81	65.246	Pan_paniscus
ENSCSEG00000008944	r3hdm1	82	64.590	ENSPPRG00000002626	R3HDM1	89	43.089	Panthera_pardus
ENSCSEG00000008944	r3hdm1	82	64.918	ENSPTIG00000016581	R3HDM1	89	43.184	Panthera_tigris_altaica
ENSCSEG00000008944	r3hdm1	82	65.246	ENSPTRG00000012494	R3HDM1	81	65.246	Pan_troglodytes
ENSCSEG00000008944	r3hdm1	93	54.253	ENSPANG00000026448	R3HDM1	81	65.246	Papio_anubis
ENSCSEG00000008944	r3hdm1	88	66.172	ENSPKIG00000004328	r3hdm1	78	68.750	Paramormyrops_kingsleyae
ENSCSEG00000008944	r3hdm1	99	44.131	ENSPSIG00000012915	R3HDM1	88	44.560	Pelodiscus_sinensis
ENSCSEG00000008944	r3hdm1	99	42.831	ENSPEMG00000015187	R3hdm1	100	59.184	Peromyscus_maniculatus_bairdii
ENSCSEG00000008944	r3hdm1	96	36.965	ENSPMAG00000003369	-	95	38.282	Petromyzon_marinus
ENSCSEG00000008944	r3hdm1	85	65.246	ENSPCIG00000002491	R3HDM1	82	63.037	Phascolarctos_cinereus
ENSCSEG00000008944	r3hdm1	100	68.085	ENSPFOG00000015036	r3hdm1	100	66.852	Poecilia_formosa
ENSCSEG00000008944	r3hdm1	100	65.689	ENSPLAG00000018042	r3hdm1	100	64.579	Poecilia_latipinna
ENSCSEG00000008944	r3hdm1	100	65.332	ENSPMEG00000023947	r3hdm1	100	64.321	Poecilia_mexicana
ENSCSEG00000008944	r3hdm1	100	68.367	ENSPREG00000007902	r3hdm1	100	67.317	Poecilia_reticulata
ENSCSEG00000008944	r3hdm1	99	43.674	ENSPPYG00000012815	R3HDM1	89	42.816	Pongo_abelii
ENSCSEG00000008944	r3hdm1	74	65.022	ENSPCAG00000006208	R3HDM1	68	55.060	Procavia_capensis
ENSCSEG00000008944	r3hdm1	79	67.972	ENSPCOG00000012698	R3HDM1	79	67.972	Propithecus_coquereli
ENSCSEG00000008944	r3hdm1	93	40.357	ENSPVAG00000006098	R3HDM1	89	37.127	Pteropus_vampyrus
ENSCSEG00000008944	r3hdm1	82	69.408	ENSPNAG00000005436	R3HDM1	87	68.421	Pygocentrus_nattereri
ENSCSEG00000008944	r3hdm1	53	37.705	ENSPNAG00000004162	arpp21	55	51.163	Pygocentrus_nattereri
ENSCSEG00000008944	r3hdm1	83	70.288	ENSPNAG00000013952	r3hdm1	84	64.021	Pygocentrus_nattereri
ENSCSEG00000008944	r3hdm1	99	42.661	ENSRNOG00000004099	R3hdm1	89	41.637	Rattus_norvegicus
ENSCSEG00000008944	r3hdm1	79	68.592	ENSRBIG00000033317	R3HDM1	86	68.592	Rhinopithecus_bieti
ENSCSEG00000008944	r3hdm1	82	65.246	ENSRROG00000034534	R3HDM1	81	65.246	Rhinopithecus_roxellana
ENSCSEG00000008944	r3hdm1	88	57.701	ENSSBOG00000020389	R3HDM1	81	65.246	Saimiri_boliviensis_boliviensis
ENSCSEG00000008944	r3hdm1	93	53.402	ENSSHAG00000016999	R3HDM1	83	44.580	Sarcophilus_harrisii
ENSCSEG00000008944	r3hdm1	100	44.495	ENSSFOG00015019851	-	90	52.941	Scleropages_formosus
ENSCSEG00000008944	r3hdm1	84	72.575	ENSSFOG00015014134	r3hdm1	82	67.826	Scleropages_formosus
ENSCSEG00000008944	r3hdm1	100	70.549	ENSSMAG00000001669	r3hdm1	90	69.750	Scophthalmus_maximus
ENSCSEG00000008944	r3hdm1	100	73.442	ENSSDUG00000010749	r3hdm1	100	72.613	Seriola_dumerili
ENSCSEG00000008944	r3hdm1	100	74.035	ENSSLDG00000004499	r3hdm1	90	73.140	Seriola_lalandi_dorsalis
ENSCSEG00000008944	r3hdm1	99	45.463	ENSSPUG00000004167	R3HDM1	88	44.612	Sphenodon_punctatus
ENSCSEG00000008944	r3hdm1	100	73.730	ENSSPAG00000004648	r3hdm1	100	72.553	Stegastes_partitus
ENSCSEG00000008944	r3hdm1	93	53.830	ENSSSCG00000015692	R3HDM1	81	61.921	Sus_scrofa
ENSCSEG00000008944	r3hdm1	96	44.046	ENSTGUG00000011750	R3HDM1	89	42.910	Taeniopygia_guttata
ENSCSEG00000008944	r3hdm1	100	65.655	ENSTRUG00000011654	r3hdm1	99	65.403	Takifugu_rubripes
ENSCSEG00000008944	r3hdm1	97	62.414	ENSTNIG00000010362	r3hdm1	99	61.690	Tetraodon_nigroviridis
ENSCSEG00000008944	r3hdm1	86	58.852	ENSTTRG00000003935	R3HDM1	66	44.832	Tursiops_truncatus
ENSCSEG00000008944	r3hdm1	72	54.658	ENSUAMG00000024806	R3HDM1	99	51.163	Ursus_americanus
ENSCSEG00000008944	r3hdm1	82	64.918	ENSUMAG00000005552	R3HDM1	88	40.772	Ursus_maritimus
ENSCSEG00000008944	r3hdm1	80	59.184	ENSVPAG00000007333	R3HDM1	74	43.017	Vicugna_pacos
ENSCSEG00000008944	r3hdm1	91	57.568	ENSVVUG00000006457	R3HDM1	81	64.918	Vulpes_vulpes
ENSCSEG00000008944	r3hdm1	94	41.341	ENSXETG00000019330	r3hdm1	91	42.111	Xenopus_tropicalis
ENSCSEG00000008944	r3hdm1	79	59.903	ENSXCOG00000017448	r3hdm1	91	64.371	Xiphophorus_couchianus
ENSCSEG00000008944	r3hdm1	100	67.224	ENSXMAG00000007885	r3hdm1	100	66.822	Xiphophorus_maculatus