EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000009553 (Gene tree)
Gene ID: 103389854
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 19164 bases
Position: chr14:16557178-16576341
Accession: 103389854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000015069	ResIII	PF04851.15	4.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000015249	-	4713	-	ENSCSEP00000015069	1570 (aa)	-	-
ENSCSET00000015179	-	7926	-	ENSCSEP00000014998	1770 (aa)	-	-
ENSCSET00000015141	-	8696	XM_008325452	ENSCSEP00000014962	1818 (aa)	XP_024918221	UPI000D629F7D
ENSCSET00000015269	-	5793	-	ENSCSEP00000015089	1734 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000009553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000009553's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000009553	chd1	92	54.267	ENSCSEG00000003646	chd2	79	55.757

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000009553	chd1	92	77.435	ENSG00000153922	CHD1	96	79.817	Homo_sapiens
ENSCSEG00000009553	chd1	72	91.873	ENSAPOG00000005764	chd1	96	91.873	Acanthochromis_polyacanthus
ENSCSEG00000009553	chd1	97	86.762	ENSAOCG00000023105	chd1	96	86.623	Amphiprion_ocellaris
ENSCSEG00000009553	chd1	97	87.873	ENSAPEG00000013544	chd1	96	87.735	Amphiprion_percula
ENSCSEG00000009553	chd1	95	88.141	ENSATEG00000010676	chd1	90	87.808	Anabas_testudineus
ENSCSEG00000009553	chd1	79	84.016	ENSAMXG00000010843	chd1	94	83.775	Astyanax_mexicanus
ENSCSEG00000009553	chd1	95	76.362	ENSCATG00000032035	CHD1	89	75.637	Cercocebus_atys
ENSCSEG00000009553	chd1	95	76.362	ENSCSAG00000015339	CHD1	88	75.587	Chlorocebus_sabaeus
ENSCSEG00000009553	chd1	56	78.400	ENSCPBG00000015831	CHD1	86	78.400	Chrysemys_picta_bellii
ENSCSEG00000009553	chd1	92	75.285	ENSCANG00000036916	CHD1	89	73.368	Colobus_angolensis_palliatus
ENSCSEG00000009553	chd1	92	76.861	ENSCGRG00001023943	Chd1	91	74.169	Cricetulus_griseus_chok1gshd
ENSCSEG00000009553	chd1	92	76.861	ENSCGRG00000008652	Chd1	90	74.169	Cricetulus_griseus_crigri
ENSCSEG00000009553	chd1	95	73.281	ENSEASG00005016110	CHD1	96	73.941	Equus_asinus_asinus
ENSCSEG00000009553	chd1	95	81.878	ENSELUG00000017677	chd1	93	81.747	Esox_lucius
ENSCSEG00000009553	chd1	78	88.662	ENSFHEG00000021164	chd1	90	88.662	Fundulus_heteroclitus
ENSCSEG00000009553	chd1	95	87.298	ENSGMOG00000001537	chd1	90	75.611	Gadus_morhua
ENSCSEG00000009553	chd1	98	73.026	ENSGALG00000031327	-	91	75.465	Gallus_gallus
ENSCSEG00000009553	chd1	81	89.214	ENSGAFG00000019880	chd1	84	89.077	Gambusia_affinis
ENSCSEG00000009553	chd1	92	74.547	ENSGGOG00000011463	CHD1	89	72.715	Gorilla_gorilla
ENSCSEG00000009553	chd1	97	85.152	ENSHCOG00000014222	chd1	95	85.336	Hippocampus_comes
ENSCSEG00000009553	chd1	93	83.176	ENSIPUG00000001369	chd1	96	80.989	Ictalurus_punctatus
ENSCSEG00000009553	chd1	56	81.448	ENSLAFG00000023183	CHD1	80	83.043	Loxodonta_africana
ENSCSEG00000009553	chd1	95	76.362	ENSMFAG00000031226	CHD1	89	75.637	Macaca_fascicularis
ENSCSEG00000009553	chd1	77	80.344	ENSMMUG00000014090	CHD1	85	80.344	Macaca_mulatta
ENSCSEG00000009553	chd1	95	76.362	ENSMNEG00000045073	CHD1	89	75.637	Macaca_nemestrina
ENSCSEG00000009553	chd1	95	71.832	ENSMLEG00000041096	CHD1	89	71.932	Mandrillus_leucophaeus
ENSCSEG00000009553	chd1	79	89.075	ENSMZEG00005010957	chd1	94	89.155	Maylandia_zebra
ENSCSEG00000009553	chd1	92	74.832	ENSMOCG00000019121	Chd1	88	73.688	Microtus_ochrogaster
ENSCSEG00000009553	chd1	77	90.531	ENSMALG00000013317	chd1	86	90.531	Monopterus_albus
ENSCSEG00000009553	chd1	96	74.856	MGP_CAROLIEiJ_G0021099	Chd1	84	81.093	Mus_caroli
ENSCSEG00000009553	chd1	92	77.011	ENSMUSG00000023852	Chd1	85	81.046	Mus_musculus
ENSCSEG00000009553	chd1	92	76.455	MGP_PahariEiJ_G0023414	Chd1	85	80.849	Mus_pahari
ENSCSEG00000009553	chd1	97	85.049	ENSNBRG00000006860	chd1	96	84.660	Neolamprologus_brichardi
ENSCSEG00000009553	chd1	92	75.367	ENSNLEG00000014493	CHD1	89	73.589	Nomascus_leucogenys
ENSCSEG00000009553	chd1	95	76.747	ENSOANG00000004891	CHD1	100	76.596	Ornithorhynchus_anatinus
ENSCSEG00000009553	chd1	56	88.801	ENSORLG00015016725	chd1	83	88.801	Oryzias_latipes_hsok
ENSCSEG00000009553	chd1	92	76.404	ENSPPAG00000043367	CHD1	90	74.464	Pan_paniscus
ENSCSEG00000009553	chd1	92	77.300	ENSPTRG00000017103	CHD1	89	75.376	Pan_troglodytes
ENSCSEG00000009553	chd1	95	76.362	ENSPANG00000006387	CHD1	89	75.637	Papio_anubis
ENSCSEG00000009553	chd1	95	73.806	ENSPKIG00000024719	chd1	92	74.402	Paramormyrops_kingsleyae
ENSCSEG00000009553	chd1	77	88.898	ENSPMGG00000005785	chd1	91	88.898	Periophthalmus_magnuspinnatus
ENSCSEG00000009553	chd1	92	76.490	ENSPEMG00000015939	Chd1	88	75.293	Peromyscus_maniculatus_bairdii
ENSCSEG00000009553	chd1	95	85.269	ENSPREG00000004209	chd1	90	84.937	Poecilia_reticulata
ENSCSEG00000009553	chd1	75	80.956	ENSRNOG00000014434	Chd1	88	78.167	Rattus_norvegicus
ENSCSEG00000009553	chd1	92	75.739	ENSRBIG00000044325	CHD1	89	74.052	Rhinopithecus_bieti
ENSCSEG00000009553	chd1	92	77.569	ENSRROG00000001726	CHD1	89	75.718	Rhinopithecus_roxellana
ENSCSEG00000009553	chd1	80	81.725	ENSSFOG00015007161	chd1	94	82.219	Scleropages_formosus
ENSCSEG00000009553	chd1	77	92.314	ENSSDUG00000018314	chd1	86	92.314	Seriola_dumerili
ENSCSEG00000009553	chd1	58	90.987	ENSSLDG00000017244	chd1	93	90.987	Seriola_lalandi_dorsalis
ENSCSEG00000009553	chd1	77	92.144	ENSSPAG00000007024	chd1	86	92.144	Stegastes_partitus
ENSCSEG00000009553	chd1	81	81.187	ENSSSCG00000014177	CHD1	89	79.756	Sus_scrofa
ENSCSEG00000009553	chd1	95	83.223	ENSTRUG00000010282	chd1	89	83.355	Takifugu_rubripes
ENSCSEG00000009553	chd1	70	89.061	ENSTNIG00000007101	chd1	85	89.061	Tetraodon_nigroviridis
ENSCSEG00000009553	chd1	99	79.275	ENSXCOG00000017184	chd1	91	81.667	Xiphophorus_couchianus
ENSCSEG00000009553	chd1	76	88.201	ENSXMAG00000014538	chd1	87	88.201	Xiphophorus_maculatus